Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Torulaspora_20delbrueckii_20[genbank_20GCA_5F001029055.1_202015-06- 17] 8 sequences; 11,524,969 total letters Query= NC_016072.1 Length=1259197 Score E Sequences producing significant alignments: (Bits) Value seq3 230 2e-54 seq6 208 6e-48 seq1 109 4e-18 >seq3 Length=1635806 Score = 230 bits (254), Expect = 2e-54 Identities = 398/571 (70%), Gaps = 8/571 (1%) Strand=Plus/Minus Query 552023 ATTTGAAGATATTTGTTCTGATCTCTTTAGAAAAACAATTGAACCAGTAGAACAAGTTTT 552082 ||||||||| | ||| | || | |||||| || | || || || ||| | || || Sbjct 315156 ATTTGAAGAGTTATGTGCAGACCAGTTTAGATCTACTTTGGACCCTGTTGAAAAGGTCTT 315097 Query 552083 AAGAGATTCAAAGATTGATAAATCCAAAGTACATGAAATTGTGCTTGTTGGTGGATCTAC 552142 ||||| || || | || ||||| || | |||| ||||| ||||||||||| ||||| Sbjct 315096 GAGAGACTCCAAATTGGACAAATCGCAAATCGATGAGATTGTCCTTGTTGGTGGTTCTAC 315037 Query 552143 AAGAATTCCTAAAATTCGCGAAATGTTAAGTTCTTATTTCAATGGTAAAAAATTAAATGA 552202 |||||||| || |||| || || | | || ||||| |||||| || ||| | Sbjct 315036 GAGAATTCCAAAGATTCAAAAATTGGTCTCTGATTTCTTCAACGGTAAAGAACCAAACAA 314977 Query 552203 AAGTGTTAATCCAGATGAGGCTGTTGCCTATGGTGCCGCAATTCAAGCAGCTATTCTTTC 552262 | |||| |||||||| ||||| || || ||||| || |||| || ||||| || | Sbjct 314976 GTCTATTAACCCAGATGAAGCTGTGGCTTACGGTGCTGCTGTTCAGGCTGCTATCCTAAC 314917 Query 552263 TGG--ACAAACTGATGAAAAACT-ACAAAATATTGTACTTGTAGATGTTACTCCTCTATC 552319 || || || | | ||||||| | | |||||| ||| |||||| ||||||| || Sbjct 314916 CGGTGACCAA-TCTTCAAAAACTCAGGATCTATTGTTATTG--GATGTTGCTCCTCTGTC 314860 Query 552320 TCTTGGTTTAGAAACAGTTGGAGGTATTATGACTAATCTTATCGATAGAAATACTACTAT 552379 || ||| | || || | || ||||| ||||| || | || ||||| | || || Sbjct 314859 CCTAGGTATTGAGACCGCAGGTGGTATCATGACCAAATTGATTCCAAGAAACTCGACGAT 314800 Query 552380 TCCTTGTAAAAAATCTCGTGTATTT-TCTACGTATTCAGATAATCAAACTGCTGTTACAA 552438 ||| || |||||| | | ||| || || || | ||||| ||| ||| ||| | Sbjct 314799 TCCAACCAAGAAATCT-GAGACTTTCTCCACTTACGCTGATAACCAACCTGGTGTCTTGA 314741 Query 552439 TTCAAATTTTTGAAGGAGAAAGAAAATTCACTAAAGATAATAATCAACTTGGTACTTTTA 552498 ||||| | || ||||| ||||||| | || || ||||| |||| | |||| || Sbjct 314740 TTCAAGTGTTCGAAGGTGAAAGAACAAAAACCAAGGATAACAATCTGTTGGGTAAATTCG 314681 Query 552499 ATTTAGAAGGTATTCCTCCTGCTCCTCGTGGAGTACCGCAAATTGAAGTTACTTTCGATA 552558 | | | ||||||||||||||||| | || || || ||||||||||| |||||||||| Sbjct 314680 AGCTGGCTGGTATTCCTCCTGCTCCAAGAGGTGTTCCACAAATTGAAGTCACTTTCGATA 314621 Query 552559 TCGATGCCAATGGAATTTTGAATGTGACTGC 552589 ||||||| ||||| || ||||| || |||| Sbjct 314620 TCGATGCAAATGGTATCTTGAACGTTTCTGC 314590 Score = 172 bits (190), Expect = 4e-37 Identities = 382/561 (68%), Gaps = 14/561 (2%) Strand=Plus/Minus Query 551781 GCTACTAGTGGAGATTCTCATCTTGGTGGCGAAGATTTTGATAATAGACTGGT-ATCATG 551839 ||||| ||| ||| |||| | ||||| |||||||| ||||| ||| | || | | Sbjct 315815 GCTACCGCTGGTGATACTCACTTGGGTGGTGAAGATTTCGATAACAGATTAGTCAACCAC 315756 Query 551840 GTGTGTTGAAGATTTTAAACGAAAAAACAAAGTTGATCTATCTACATCTGC-CAAAGCTC 551898 || | | | || || || |||| ||||| ||| ||| ||||| ||||| || Sbjct 315755 TTG-GCTAACGAGTTCAAGAGAAAGAACAAGAAGGAT--ATC-ACATCGAATCAAAGATC 315700 Query 551899 TTCGTC--GTCTAAGAACTGCTTGCGAAAGAGCCAAACGAGCTCTTTCATCTGGTACTCA 551956 || | | | || ||||| |||||||| || ||||| | || ||| |||| Sbjct 315699 TTTGAGAAGATTGAGGACTGCCGCTGAAAGAGCAAAGAGAGCTTTATCCTCTTCGTCTCA 315640 Query 551957 AACCACTATTGAAGTAGATTCATTATTTGAGGGAATTGATTATAATACGCCTATTTCGAG 552016 ||| | |||||| | ||||| || ||||| || || |||| | || || | |||| Sbjct 315639 AACTTCCATTGAAATCGATTCTTTGTTTGAAGGTATCGATTTCTACACTTCTCTAACGAG 315580 Query 552017 GGCCAAATTTGAAGATATTTGTTCTGATCTCTTTAGAAAAACAATTGAACCAGTAGAACA 552076 |||| ||||||||| | ||| | || | |||||| || | || ||||| ||| | Sbjct 315579 AGCCAGATTTGAAGAGTTGTGTGCGGACCAGTTTAGATCTACTTTAGACCCAGTTGAAAA 315520 Query 552077 AGTTTTAAGAGATTCAAAGATTGATAAATCCAAAGTACATGAAATTGTGCTTGTTGGTGG 552136 || || ||||| || || | || ||||| || | |||| ||||| ||||||||||| Sbjct 315519 GGTCTTGAGAGACTCCAAATTGGACAAATCGCAAATCGATGAGATTGTCCTTGTTGGTGG 315460 Query 552137 ATCTACAAGAATTCCTAAAATTCGCGAAATGTTAAGTTCTTATTTCAATGGTAAAAAATT 552196 ||||| |||||||| || |||| || || | | || ||||| |||||| || Sbjct 315459 TTCTACGAGAATTCCAAAGATTCAAAAATTGGTCTCTGATTTCTTCAACGGTAAAGAACC 315400 Query 552197 AAATGAAAGTGTTAATCCAGATGAGGCTGTTGCCTATGGTGCCGCAATTCAAGCAGCTAT 552256 ||| | | |||| |||||||| ||||| || |||||||| || ||||||| ||||| Sbjct 315399 AAACAAGTCTATTAACCCAGATGAAGCTGTGGCTTATGGTGCTGCTGTTCAAGCTGCTAT 315340 Query 552257 TCTTTCTG--GACAAACTGATGAAAAACT-ACAAAATATTGTACTTGTAGATGTTACTCC 552313 || | | ||| || | | ||| ||| | | |||||| | |||||||| |||| Sbjct 315339 CCTAACCGGTGACCAA-TCTTCAAAGACTCAGGACCTATTGT--TATTAGATGTTGCTCC 315283 Query 552314 TCTATCTCTTGGTTTAGAAAC 552334 ||| || || ||| | || || Sbjct 315282 TCTGTCCCTAGGTATTGAGAC 315262 Score = 132 bits (146), Expect = 4e-25 Identities = 178/248 (72%), Gaps = 6/248 (2%) Strand=Plus/Minus Query 549969 AAGATATAATGTCAAACAAAGTAGCTATAGGTATAGATTTAGGAACCACATATAGTTGTG 550028 |||| | ||||||||| |||| | ||||| ||||| || || ||||| |||| Sbjct 316656 AAGACAAAATGTCAAA------AGCTGTTGGTATCGATTTGGGTACTACATACTCATGTG 316603 Query 550029 TTGGTGTTTGGCAAAATGGTAAAGTTGAAATTATTGCCAATGATCAAGGTAACAGAACTA 550088 | | || ||||| | ||||||||||| || || ||||||||||||||||||| Sbjct 316602 TGGCCCATTTTTCAAATGATCGTGTTGAAATTATCGCTAACGATCAAGGTAACAGAACTA 316543 Query 550089 CTCCATCTTATGTTTCTTTCACGGAAACTGAACATTTAGTTGGTGATGCAGCAAAATATC 550148 | ||||| ||||| ||||||| || |||||| || |||||||||| ||||| | | Sbjct 316542 CCCCATCGTATGTGGCTTTCACTGATACTGAAAGGTTGATTGGTGATGCTGCAAAGAACC 316483 Query 550149 AAGCCACTGGTAATCCTACCAATACTATTTTTGATGCTAAACGTTTAATTGGAAGAAGTT 550208 | || || ||| ||| || ||| |||| || ||||| |||||||| || | | | Sbjct 316482 AGGCTGCTATTAACCCTCAAAACACTGTTTTCGACGCTAAGCGTTTAATCGGTCGTAAAT 316423 Query 550209 TTAATGAT 550216 || ||||| Sbjct 316422 TTGATGAT 316415 Score = 129 bits (142), Expect = 5e-24 Identities = 160/214 (75%), Gaps = 4/214 (2%) Strand=Plus/Minus Query 550316 TTTTCACCAGAACAAATTTCATCTATGGTTTTAATGAAAATGAAACAAACAGCCAGTGCT 550375 ||| |||| || ||||||| || |||||||| | || |||||| | || || || Sbjct 316136 TTTACACCCGAGGAAATTTCCTCGATGGTTTTGGTTAAGATGAAAGAGACCGC-AGAAGG 316078 Query 550376 TTTGTTGGTCAAGAA-GTTACGGATGCAGTAATAACTGTACCAGCATATTTTAATGACTC 550434 || |||| | | || | |||||| || | ||||| ||||| ||||| || || || Sbjct 316077 GTTCTTGGGTACTACTGTCAAGGATGCTGTTGTTACTGTTCCAGCTTATTTCAACGATTC 316018 Query 550435 ACAACGTCAAGCTACTAAAGATGCTGG-ACGTATTGCTGGACTTAATGTTCTTCGTATTA 550493 ||| | |||||||||||||||||||| ||| |||||||| | ||||| | ||||| | Sbjct 316017 TCAAAGACAAGCTACTAAAGATGCTGGTACG-ATTGCTGGTTTGAATGTGTTGCGTATCA 315959 Query 550494 TCAATGAACCTACTGCTGCTGCACTTGCATATGG 550527 | |||||||||||||||||||| | ||||| || Sbjct 315958 TTAATGAACCTACTGCTGCTGCTATCGCATACGG 315925 >seq6 Length=1369539 Score = 208 bits (230), Expect = 6e-48 Identities = 338/482 (70%), Gaps = 12/482 (2%) Strand=Plus/Plus Query 550052 GTTGAAATTATTGCCAATGATCAAGGTAACAGAACTACTCCATCTTATGTTTCTTTCACG 550111 ||||||||||||||||| ||||||||||||||||| ||||| |||| ||| | ||||| Sbjct 373592 GTTGAAATTATTGCCAACGATCAAGGTAACAGAACCACTCCTTCTTTCGTTGCATTCACC 373651 Query 550112 GAAACTGAACATTTAGTTGGTGATGCAGCAAAATATCAAGCCACTGGTAATCCTACCAAT 550171 || |||||| || |||||||||| || || | ||||| || || || | ||| Sbjct 373652 GACACTGAAAGATTGATTGGTGATGCTGCTAAGAACCAAGCTGCTATGAACCCAAGCAAC 373711 Query 550172 ACTATTTTTGATGCTAAACGTTTAATTGGAAGAAGTTTTAATGATTCGACTGTTCAGGCA 550231 || |||| |||||||| ||||| || || |||| || | || | || || | Sbjct 373712 ACCGTTTTCGATGCTAAGCGTTTGATCGGTAGAAACTTCAGCGACCCAGAGGTGCAAGGT 373771 Query 550232 GATATGAAGCATTGGCCTTTCCAAATTGTTAATGTTTCTGGAAAACCTTATATTGAAGCT 550291 ||||||||||| | || ||| | || || ||||| || || || | ||| ||| | Sbjct 373772 GATATGAAGCACTTCCCATTCAAGATCGTCGATGTTGAAGGTAAGCCACAAATTCAAGTT 373831 Query 550292 ACTCATGAAGGATCTGTTAAAC-----AATTTTCACCAGAACAAATTTCATCTATGGTTT 550346 | |||| || |||| | ||| | ||||||||||| || |||||||| | Sbjct 373832 GAATA-CAAGG----GTGAAACCAAGAAGTTTACTCCAGAACAAATCTCTTCTATGGTCT 373886 Query 550347 TAATGAAAATGAAACAAACAGC-CAGTGCTTTTGTTGGTCAAGAAGTTACGGATGCAGTA 550405 | || ||||| |||| || || | || | ||| | | |||| |||||| || Sbjct 373887 TGGGTAAGATGAAGGAAACTGCTGAGAG-TTACTTGGGTGACAACGTTAAGGATGCTGTT 373945 Query 550406 ATAACTGTACCAGCATATTTTAATGACTCACAACGTCAAGCTACTAAAGATGCTGGACGT 550465 | ||||| ||||| ||||| || || || ||| | |||||||| ||||||||||| Sbjct 373946 GTTACTGTTCCAGCTTATTTCAACGATTCTCAAAGACAAGCTACCAAAGATGCTGGTACC 374005 Query 550466 ATTGCTGGACTTAATGTTCTTCGTATTATCAATGAACCTACTGCTGCTGCACTTGCATAT 550525 |||||||| | || || | ||||| || || |||||||| |||||||| |||| || Sbjct 374006 ATTGCTGGTTTGAACGTCTTGCGTATCATTAACGAACCTACCGCTGCTGCCATTGCCTAC 374065 Query 550526 GG 550527 || Sbjct 374066 GG 374067 Score = 170 bits (188), Expect = 2e-36 Identities = 365/534 (68%), Gaps = 26/534 (5%) Strand=Plus/Plus Query 552063 GAACCAGTAGAACAAGTTTTAAGAGATTCAAAGATTGATAAATCCAAAGTACATGAAATT 552122 || || || ||| | || || ||||| || ||| | || ||||| |||| || ||||| Sbjct 374639 GACCCTGTTGAAAAGGTCTTGAGAGACTCTAAGTTGGACAAATCTCAAGTTCACGAAATC 374698 Query 552123 GTGCTTGTTGGTGGATCTACAAGAATTCCTAAAATTCGCGAAATGTTAAGTTCTTATTTC 552182 || | |||||||| || || |||||||| || ||| ||| ||| | | ||||| Sbjct 374699 GTCTTGGTTGGTGGTTCCACCAGAATTCCAAAGGTTC---AAAAGTTGGTTACCGATTTC 374755 Query 552183 ---AATGGTAAAAAATTAAATGAAAGTGTTAATCCAGATGAGGCTGTTGCCTATGGTGCC 552239 || ||||| || ||| | | || |||||||| |||||||| || |||||| Sbjct 374756 TTCAACGGTAAGGAACCAAACAGATCCATCAACCCAGATGAAGCTGTTGCTTACGGTGCC 374815 Query 552240 GCAATTCAAGCAGCTATTCTTTCTGG--ACAAACTGATGAAAAACTACAAAAT--ATTGT 552295 || | ||||| ||||| | |||| || || | | || ||| ||| || ||||| Sbjct 374816 GCTGTCCAAGCTGCTATCTTGACTGGTGACCAA-TCTTCCAAGACT-CAAGATCTATTGT 374873 Query 552296 ACTTGTAGATGTTACTCCTCTATCTCTTGGTTTAGAAACAGTTGGAGGTATTATGACTAA 552355 ||| |||||| ||||||||||||| ||| | ||||| | ||| ||| | ||||| || Sbjct 374874 TGTTG--GATGTTGCTCCTCTATCTCTAGGTATTGAAACCGCTGGTGGTGTCATGACCAA 374931 Query 552356 TCTTATCGATAGAAATACTACTATTCCTTGTAAAAAATCTCGTGTATTT-TCTACGTATT 552414 | || ||||| |||||||||| || || || || | ||| || || || Sbjct 374932 GTTGATTCCAAGAAACTCTACTATTCCAACCAAGAAGTC-CGAGACTTTCTCCACTTACG 374990 Query 552415 CAGATAATCAAACTGCTGTTACAATTCAAATTTTTGAAGGAGAAAGAAAATTCACTAAAG 552474 | || || ||| | | ||| |||||| | |||||||| |||||| || || | Sbjct 374991 CTGACAACCAACCAGGTGTCTTGATTCAAGTCTTTGAAGGTGAAAGAGCTAGAACAAAGG 375050 Query 552475 ATAATAATCAACTTGGT-----ACTTTTAATTTAGAAGGTATTCCTCCTGCTCCTCGTGG 552529 | || ||||||| | | || |||| || |||||||| || ||||| | || Sbjct 375051 ACAA----CAACTTGTTGGGTAAGTTCGAATTGAG-TGGTATTCCACCAGCTCCAAGAGG 375105 Query 552530 AGTACCGCAAATTGAAGTTACTTTCGATATCGATGCCAATGGAATTTTGAATGT 552583 || || ||||| |||||||| |||||| ||||| | || || || |||||||| Sbjct 375106 TGTCCCACAAATCGAAGTTACCTTCGATGTCGATTCTAACGGTATCTTGAATGT 375159 >seq1 Length=1865156 Score = 109 bits (120), Expect = 4e-18 Identities = 318/482 (66%), Gaps = 12/482 (2%) Strand=Plus/Plus Query 550052 GTTGAAATTATTGCCAATGATCAAGGTAACAGAACTACTCCATCTTATGTTTCTTTCACG 550111 ||||| ||||| ||||| || |||||||||||| ||||||||||| ||| ||||||| Sbjct 190017 GTTGAGATTATCGCCAACGAGCAAGGTAACAGAGTTACTCCATCTTTCGTTGCTTTCACT 190076 Query 550112 GAAACTGA-ACATTTAGTTGGTGATGCAGCAAAATATCAAGCCACTGGTAATCCTACCAA 550170 | || | ||| | | ||||| || || || | || || || || || || Sbjct 190077 CCAGAAGAGAGATTGA-TCGGTGAAGCTGCCAAGAACCAGGCTGCTTTGAACCCAGAGAA 190135 Query 550171 TACTATTTTTGATGCTAAACGTTTAATTGGAAGAAGTTTTAATGATTCGACTGTTCAGGC 550230 |||| | || || ||||| ||||| || || ||| ||| | |||| ||||||| Sbjct 190136 TACTGTCTTCGACGCTAAGCGTTTGATCGGTAGACGTTATGATGAAGAATCTGTTCAAAA 190195 Query 550231 AGATATGAAGCATTGGCCTTTCCAAATTGTTAATGTTTCTGGAAAACCTTATATTGAAG- 550289 ||||||||| ||||||||| | | | |||| || || || |||| Sbjct 190196 CGATATGAAGACCTGGCCTTTCAAGGTCATCGATGTCGAGGGTTCTCCAGTCATCGAAGT 190255 Query 550290 -CTACTCATGAAGGATCTGTTA--AACAATTT-TCACCAGAACAAATTTCATCTATGGTT 550345 | | | || || || | || | ||| || ||| || |||| || |||||||| Sbjct 190256 CCAATACTTG--GG---TGAAACCAAGACTTTCTCCCCACAAGAAATCTCTGCTATGGTT 190310 Query 550346 TTAATGAAAATGAAACAAACAGCCAGTGCTTTTGTTGGTCAAGAAGTTACGGATGCAGTA 550405 || | || ||||| | | || ||| ||| |||| | ||| | || || Sbjct 190311 TTGACCAAGATGAAGGAGATTGCTGAGGCTAAGATTGCTCAAAAGGTTGAAAAGGCTGTT 190370 Query 550406 ATAACTGTACCAGCATATTTTAATGACTCACAACGTCAAGCTACTAAAGATGCTGGACGT 550465 || || || ||||| ||||| || || | ||| | |||||||| || |||||||| Sbjct 190371 ATCACCGTTCCAGCTTATTTCAACGATGCTCAAAGACAAGCTACCAAGGATGCTGGTTCC 190430 Query 550466 ATTGCTGGACTTAATGTTCTTCGTATTATCAATGAACCTACTGCTGCTGCACTTGCATAT 550525 || ||||| | || || | ||||||||||| ||||| || || ||||| |||| || Sbjct 190431 ATCGCTGGTTTGAACGTCTTGCGTATTATCAACGAACCAACCGCCGCTGCCATTGCTTAC 190490 Query 550526 GG 550527 || Sbjct 190491 GG 190492 Score = 86.0 bits (94), Expect = 5e-11 Identities = 223/336 (66%), Gaps = 8/336 (2%) Strand=Plus/Plus Query 551925 AGAGCCAAACGAGCTCTTTCATCTGGTACTCAAACCACTATTGAAGTAGATTCATTATTT 551984 ||||| || || || | || |||| |||||||||||| | ||||| || || || || Sbjct 191037 AGAGCTAAGAGAACTTTGTCCTCTGTCACTCAAACCACTGTCGAAGTTGACTCTTTGTTC 191096 Query 551985 GAGGGAATTGATTATAATACGCCTATTTCGAGGGCCAAATTTGAAGATATTTGTTCTGAT 552044 || || |||| | || |||| | || || | ||| |||| | ||| || Sbjct 191097 GACGGTGAAGATTTCGAAACTTCTATCACCAGAGCTAGATTCGAAG--ACTTGAACTCTG 191154 Query 552045 CTCTTTAGAAAAACAATT--GAACCAGTAGAACAAGTTTTAAGAGATTCAAAGATTGATA 552102 |||||| ||| || || |||||||| |||||||| || | || | ||||| | Sbjct 191155 CTCTTTTCAAATCCACTTTGGAACCAGTTGAACAAGTCTTGAAGGACGCTAAGATCTCCA 191214 Query 552103 AATCCAAAGTACATGAAATTGTGCTTGTTGGTGGATCTACAAGAATTCCTAAAATTCGCG 552162 | || || | | ||| |||| | |||||||| || || |||||||| || | | Sbjct 191215 AGTCTCAAATCGACGAAGTTGTCTTGGTTGGTGGTTCCACTAGAATTCCAAAGGTCCAAA 191274 Query 552163 AAATGTTAAGTTC--TTATTTCAATGGTAAAAAATTAAATGAAAGTGTTAATCCAGATGA 552220 || |||| || | | ||| | ||||| |||| | || | |||| |||||||| Sbjct 191275 AATTGTT--GTCCGACTTCTTCGAAGGTAAGCAATTGGAGAAATCTATTAACCCAGATGA 191332 Query 552221 GGCTGTTGCCTATGGTGCCGCAATTCAAGCAGCTAT 552256 || || || || ||||| || |||||| ||||| Sbjct 191333 AGCCGTCGCTTACGGTGCTGCTGTTCAAGGTGCTAT 191368 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 4029295576923920