Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Torulaspora_20delbrueckii_20[genbank_20GCA_5F001029055.1_202015-06-
17] 8 sequences; 11,524,969 total letters
Query= NC_016072.1
Length=1259197
Score E
Sequences producing significant alignments: (Bits) Value
seq3 230 2e-54
seq6 208 6e-48
seq1 109 4e-18
>seq3
Length=1635806
Score = 230 bits (254), Expect = 2e-54
Identities = 398/571 (70%), Gaps = 8/571 (1%)
Strand=Plus/Minus
Query 552023 ATTTGAAGATATTTGTTCTGATCTCTTTAGAAAAACAATTGAACCAGTAGAACAAGTTTT 552082
||||||||| | ||| | || | |||||| || | || || || ||| | || ||
Sbjct 315156 ATTTGAAGAGTTATGTGCAGACCAGTTTAGATCTACTTTGGACCCTGTTGAAAAGGTCTT 315097
Query 552083 AAGAGATTCAAAGATTGATAAATCCAAAGTACATGAAATTGTGCTTGTTGGTGGATCTAC 552142
||||| || || | || ||||| || | |||| ||||| ||||||||||| |||||
Sbjct 315096 GAGAGACTCCAAATTGGACAAATCGCAAATCGATGAGATTGTCCTTGTTGGTGGTTCTAC 315037
Query 552143 AAGAATTCCTAAAATTCGCGAAATGTTAAGTTCTTATTTCAATGGTAAAAAATTAAATGA 552202
|||||||| || |||| || || | | || ||||| |||||| || ||| |
Sbjct 315036 GAGAATTCCAAAGATTCAAAAATTGGTCTCTGATTTCTTCAACGGTAAAGAACCAAACAA 314977
Query 552203 AAGTGTTAATCCAGATGAGGCTGTTGCCTATGGTGCCGCAATTCAAGCAGCTATTCTTTC 552262
| |||| |||||||| ||||| || || ||||| || |||| || ||||| || |
Sbjct 314976 GTCTATTAACCCAGATGAAGCTGTGGCTTACGGTGCTGCTGTTCAGGCTGCTATCCTAAC 314917
Query 552263 TGG--ACAAACTGATGAAAAACT-ACAAAATATTGTACTTGTAGATGTTACTCCTCTATC 552319
|| || || | | ||||||| | | |||||| ||| |||||| ||||||| ||
Sbjct 314916 CGGTGACCAA-TCTTCAAAAACTCAGGATCTATTGTTATTG--GATGTTGCTCCTCTGTC 314860
Query 552320 TCTTGGTTTAGAAACAGTTGGAGGTATTATGACTAATCTTATCGATAGAAATACTACTAT 552379
|| ||| | || || | || ||||| ||||| || | || ||||| | || ||
Sbjct 314859 CCTAGGTATTGAGACCGCAGGTGGTATCATGACCAAATTGATTCCAAGAAACTCGACGAT 314800
Query 552380 TCCTTGTAAAAAATCTCGTGTATTT-TCTACGTATTCAGATAATCAAACTGCTGTTACAA 552438
||| || |||||| | | ||| || || || | ||||| ||| ||| ||| |
Sbjct 314799 TCCAACCAAGAAATCT-GAGACTTTCTCCACTTACGCTGATAACCAACCTGGTGTCTTGA 314741
Query 552439 TTCAAATTTTTGAAGGAGAAAGAAAATTCACTAAAGATAATAATCAACTTGGTACTTTTA 552498
||||| | || ||||| ||||||| | || || ||||| |||| | |||| ||
Sbjct 314740 TTCAAGTGTTCGAAGGTGAAAGAACAAAAACCAAGGATAACAATCTGTTGGGTAAATTCG 314681
Query 552499 ATTTAGAAGGTATTCCTCCTGCTCCTCGTGGAGTACCGCAAATTGAAGTTACTTTCGATA 552558
| | | ||||||||||||||||| | || || || ||||||||||| ||||||||||
Sbjct 314680 AGCTGGCTGGTATTCCTCCTGCTCCAAGAGGTGTTCCACAAATTGAAGTCACTTTCGATA 314621
Query 552559 TCGATGCCAATGGAATTTTGAATGTGACTGC 552589
||||||| ||||| || ||||| || ||||
Sbjct 314620 TCGATGCAAATGGTATCTTGAACGTTTCTGC 314590
Score = 172 bits (190), Expect = 4e-37
Identities = 382/561 (68%), Gaps = 14/561 (2%)
Strand=Plus/Minus
Query 551781 GCTACTAGTGGAGATTCTCATCTTGGTGGCGAAGATTTTGATAATAGACTGGT-ATCATG 551839
||||| ||| ||| |||| | ||||| |||||||| ||||| ||| | || | |
Sbjct 315815 GCTACCGCTGGTGATACTCACTTGGGTGGTGAAGATTTCGATAACAGATTAGTCAACCAC 315756
Query 551840 GTGTGTTGAAGATTTTAAACGAAAAAACAAAGTTGATCTATCTACATCTGC-CAAAGCTC 551898
|| | | | || || || |||| ||||| ||| ||| ||||| ||||| ||
Sbjct 315755 TTG-GCTAACGAGTTCAAGAGAAAGAACAAGAAGGAT--ATC-ACATCGAATCAAAGATC 315700
Query 551899 TTCGTC--GTCTAAGAACTGCTTGCGAAAGAGCCAAACGAGCTCTTTCATCTGGTACTCA 551956
|| | | | || ||||| |||||||| || ||||| | || ||| ||||
Sbjct 315699 TTTGAGAAGATTGAGGACTGCCGCTGAAAGAGCAAAGAGAGCTTTATCCTCTTCGTCTCA 315640
Query 551957 AACCACTATTGAAGTAGATTCATTATTTGAGGGAATTGATTATAATACGCCTATTTCGAG 552016
||| | |||||| | ||||| || ||||| || || |||| | || || | ||||
Sbjct 315639 AACTTCCATTGAAATCGATTCTTTGTTTGAAGGTATCGATTTCTACACTTCTCTAACGAG 315580
Query 552017 GGCCAAATTTGAAGATATTTGTTCTGATCTCTTTAGAAAAACAATTGAACCAGTAGAACA 552076
|||| ||||||||| | ||| | || | |||||| || | || ||||| ||| |
Sbjct 315579 AGCCAGATTTGAAGAGTTGTGTGCGGACCAGTTTAGATCTACTTTAGACCCAGTTGAAAA 315520
Query 552077 AGTTTTAAGAGATTCAAAGATTGATAAATCCAAAGTACATGAAATTGTGCTTGTTGGTGG 552136
|| || ||||| || || | || ||||| || | |||| ||||| |||||||||||
Sbjct 315519 GGTCTTGAGAGACTCCAAATTGGACAAATCGCAAATCGATGAGATTGTCCTTGTTGGTGG 315460
Query 552137 ATCTACAAGAATTCCTAAAATTCGCGAAATGTTAAGTTCTTATTTCAATGGTAAAAAATT 552196
||||| |||||||| || |||| || || | | || ||||| |||||| ||
Sbjct 315459 TTCTACGAGAATTCCAAAGATTCAAAAATTGGTCTCTGATTTCTTCAACGGTAAAGAACC 315400
Query 552197 AAATGAAAGTGTTAATCCAGATGAGGCTGTTGCCTATGGTGCCGCAATTCAAGCAGCTAT 552256
||| | | |||| |||||||| ||||| || |||||||| || ||||||| |||||
Sbjct 315399 AAACAAGTCTATTAACCCAGATGAAGCTGTGGCTTATGGTGCTGCTGTTCAAGCTGCTAT 315340
Query 552257 TCTTTCTG--GACAAACTGATGAAAAACT-ACAAAATATTGTACTTGTAGATGTTACTCC 552313
|| | | ||| || | | ||| ||| | | |||||| | |||||||| ||||
Sbjct 315339 CCTAACCGGTGACCAA-TCTTCAAAGACTCAGGACCTATTGT--TATTAGATGTTGCTCC 315283
Query 552314 TCTATCTCTTGGTTTAGAAAC 552334
||| || || ||| | || ||
Sbjct 315282 TCTGTCCCTAGGTATTGAGAC 315262
Score = 132 bits (146), Expect = 4e-25
Identities = 178/248 (72%), Gaps = 6/248 (2%)
Strand=Plus/Minus
Query 549969 AAGATATAATGTCAAACAAAGTAGCTATAGGTATAGATTTAGGAACCACATATAGTTGTG 550028
|||| | ||||||||| |||| | ||||| ||||| || || ||||| ||||
Sbjct 316656 AAGACAAAATGTCAAA------AGCTGTTGGTATCGATTTGGGTACTACATACTCATGTG 316603
Query 550029 TTGGTGTTTGGCAAAATGGTAAAGTTGAAATTATTGCCAATGATCAAGGTAACAGAACTA 550088
| | || ||||| | ||||||||||| || || |||||||||||||||||||
Sbjct 316602 TGGCCCATTTTTCAAATGATCGTGTTGAAATTATCGCTAACGATCAAGGTAACAGAACTA 316543
Query 550089 CTCCATCTTATGTTTCTTTCACGGAAACTGAACATTTAGTTGGTGATGCAGCAAAATATC 550148
| ||||| ||||| ||||||| || |||||| || |||||||||| ||||| | |
Sbjct 316542 CCCCATCGTATGTGGCTTTCACTGATACTGAAAGGTTGATTGGTGATGCTGCAAAGAACC 316483
Query 550149 AAGCCACTGGTAATCCTACCAATACTATTTTTGATGCTAAACGTTTAATTGGAAGAAGTT 550208
| || || ||| ||| || ||| |||| || ||||| |||||||| || | | |
Sbjct 316482 AGGCTGCTATTAACCCTCAAAACACTGTTTTCGACGCTAAGCGTTTAATCGGTCGTAAAT 316423
Query 550209 TTAATGAT 550216
|| |||||
Sbjct 316422 TTGATGAT 316415
Score = 129 bits (142), Expect = 5e-24
Identities = 160/214 (75%), Gaps = 4/214 (2%)
Strand=Plus/Minus
Query 550316 TTTTCACCAGAACAAATTTCATCTATGGTTTTAATGAAAATGAAACAAACAGCCAGTGCT 550375
||| |||| || ||||||| || |||||||| | || |||||| | || || ||
Sbjct 316136 TTTACACCCGAGGAAATTTCCTCGATGGTTTTGGTTAAGATGAAAGAGACCGC-AGAAGG 316078
Query 550376 TTTGTTGGTCAAGAA-GTTACGGATGCAGTAATAACTGTACCAGCATATTTTAATGACTC 550434
|| |||| | | || | |||||| || | ||||| ||||| ||||| || || ||
Sbjct 316077 GTTCTTGGGTACTACTGTCAAGGATGCTGTTGTTACTGTTCCAGCTTATTTCAACGATTC 316018
Query 550435 ACAACGTCAAGCTACTAAAGATGCTGG-ACGTATTGCTGGACTTAATGTTCTTCGTATTA 550493
||| | |||||||||||||||||||| ||| |||||||| | ||||| | ||||| |
Sbjct 316017 TCAAAGACAAGCTACTAAAGATGCTGGTACG-ATTGCTGGTTTGAATGTGTTGCGTATCA 315959
Query 550494 TCAATGAACCTACTGCTGCTGCACTTGCATATGG 550527
| |||||||||||||||||||| | ||||| ||
Sbjct 315958 TTAATGAACCTACTGCTGCTGCTATCGCATACGG 315925
>seq6
Length=1369539
Score = 208 bits (230), Expect = 6e-48
Identities = 338/482 (70%), Gaps = 12/482 (2%)
Strand=Plus/Plus
Query 550052 GTTGAAATTATTGCCAATGATCAAGGTAACAGAACTACTCCATCTTATGTTTCTTTCACG 550111
||||||||||||||||| ||||||||||||||||| ||||| |||| ||| | |||||
Sbjct 373592 GTTGAAATTATTGCCAACGATCAAGGTAACAGAACCACTCCTTCTTTCGTTGCATTCACC 373651
Query 550112 GAAACTGAACATTTAGTTGGTGATGCAGCAAAATATCAAGCCACTGGTAATCCTACCAAT 550171
|| |||||| || |||||||||| || || | ||||| || || || | |||
Sbjct 373652 GACACTGAAAGATTGATTGGTGATGCTGCTAAGAACCAAGCTGCTATGAACCCAAGCAAC 373711
Query 550172 ACTATTTTTGATGCTAAACGTTTAATTGGAAGAAGTTTTAATGATTCGACTGTTCAGGCA 550231
|| |||| |||||||| ||||| || || |||| || | || | || || |
Sbjct 373712 ACCGTTTTCGATGCTAAGCGTTTGATCGGTAGAAACTTCAGCGACCCAGAGGTGCAAGGT 373771
Query 550232 GATATGAAGCATTGGCCTTTCCAAATTGTTAATGTTTCTGGAAAACCTTATATTGAAGCT 550291
||||||||||| | || ||| | || || ||||| || || || | ||| ||| |
Sbjct 373772 GATATGAAGCACTTCCCATTCAAGATCGTCGATGTTGAAGGTAAGCCACAAATTCAAGTT 373831
Query 550292 ACTCATGAAGGATCTGTTAAAC-----AATTTTCACCAGAACAAATTTCATCTATGGTTT 550346
| |||| || |||| | ||| | ||||||||||| || |||||||| |
Sbjct 373832 GAATA-CAAGG----GTGAAACCAAGAAGTTTACTCCAGAACAAATCTCTTCTATGGTCT 373886
Query 550347 TAATGAAAATGAAACAAACAGC-CAGTGCTTTTGTTGGTCAAGAAGTTACGGATGCAGTA 550405
| || ||||| |||| || || | || | ||| | | |||| |||||| ||
Sbjct 373887 TGGGTAAGATGAAGGAAACTGCTGAGAG-TTACTTGGGTGACAACGTTAAGGATGCTGTT 373945
Query 550406 ATAACTGTACCAGCATATTTTAATGACTCACAACGTCAAGCTACTAAAGATGCTGGACGT 550465
| ||||| ||||| ||||| || || || ||| | |||||||| |||||||||||
Sbjct 373946 GTTACTGTTCCAGCTTATTTCAACGATTCTCAAAGACAAGCTACCAAAGATGCTGGTACC 374005
Query 550466 ATTGCTGGACTTAATGTTCTTCGTATTATCAATGAACCTACTGCTGCTGCACTTGCATAT 550525
|||||||| | || || | ||||| || || |||||||| |||||||| |||| ||
Sbjct 374006 ATTGCTGGTTTGAACGTCTTGCGTATCATTAACGAACCTACCGCTGCTGCCATTGCCTAC 374065
Query 550526 GG 550527
||
Sbjct 374066 GG 374067
Score = 170 bits (188), Expect = 2e-36
Identities = 365/534 (68%), Gaps = 26/534 (5%)
Strand=Plus/Plus
Query 552063 GAACCAGTAGAACAAGTTTTAAGAGATTCAAAGATTGATAAATCCAAAGTACATGAAATT 552122
|| || || ||| | || || ||||| || ||| | || ||||| |||| || |||||
Sbjct 374639 GACCCTGTTGAAAAGGTCTTGAGAGACTCTAAGTTGGACAAATCTCAAGTTCACGAAATC 374698
Query 552123 GTGCTTGTTGGTGGATCTACAAGAATTCCTAAAATTCGCGAAATGTTAAGTTCTTATTTC 552182
|| | |||||||| || || |||||||| || ||| ||| ||| | | |||||
Sbjct 374699 GTCTTGGTTGGTGGTTCCACCAGAATTCCAAAGGTTC---AAAAGTTGGTTACCGATTTC 374755
Query 552183 ---AATGGTAAAAAATTAAATGAAAGTGTTAATCCAGATGAGGCTGTTGCCTATGGTGCC 552239
|| ||||| || ||| | | || |||||||| |||||||| || ||||||
Sbjct 374756 TTCAACGGTAAGGAACCAAACAGATCCATCAACCCAGATGAAGCTGTTGCTTACGGTGCC 374815
Query 552240 GCAATTCAAGCAGCTATTCTTTCTGG--ACAAACTGATGAAAAACTACAAAAT--ATTGT 552295
|| | ||||| ||||| | |||| || || | | || ||| ||| || |||||
Sbjct 374816 GCTGTCCAAGCTGCTATCTTGACTGGTGACCAA-TCTTCCAAGACT-CAAGATCTATTGT 374873
Query 552296 ACTTGTAGATGTTACTCCTCTATCTCTTGGTTTAGAAACAGTTGGAGGTATTATGACTAA 552355
||| |||||| ||||||||||||| ||| | ||||| | ||| ||| | ||||| ||
Sbjct 374874 TGTTG--GATGTTGCTCCTCTATCTCTAGGTATTGAAACCGCTGGTGGTGTCATGACCAA 374931
Query 552356 TCTTATCGATAGAAATACTACTATTCCTTGTAAAAAATCTCGTGTATTT-TCTACGTATT 552414
| || ||||| |||||||||| || || || || | ||| || || ||
Sbjct 374932 GTTGATTCCAAGAAACTCTACTATTCCAACCAAGAAGTC-CGAGACTTTCTCCACTTACG 374990
Query 552415 CAGATAATCAAACTGCTGTTACAATTCAAATTTTTGAAGGAGAAAGAAAATTCACTAAAG 552474
| || || ||| | | ||| |||||| | |||||||| |||||| || || |
Sbjct 374991 CTGACAACCAACCAGGTGTCTTGATTCAAGTCTTTGAAGGTGAAAGAGCTAGAACAAAGG 375050
Query 552475 ATAATAATCAACTTGGT-----ACTTTTAATTTAGAAGGTATTCCTCCTGCTCCTCGTGG 552529
| || ||||||| | | || |||| || |||||||| || ||||| | ||
Sbjct 375051 ACAA----CAACTTGTTGGGTAAGTTCGAATTGAG-TGGTATTCCACCAGCTCCAAGAGG 375105
Query 552530 AGTACCGCAAATTGAAGTTACTTTCGATATCGATGCCAATGGAATTTTGAATGT 552583
|| || ||||| |||||||| |||||| ||||| | || || || ||||||||
Sbjct 375106 TGTCCCACAAATCGAAGTTACCTTCGATGTCGATTCTAACGGTATCTTGAATGT 375159
>seq1
Length=1865156
Score = 109 bits (120), Expect = 4e-18
Identities = 318/482 (66%), Gaps = 12/482 (2%)
Strand=Plus/Plus
Query 550052 GTTGAAATTATTGCCAATGATCAAGGTAACAGAACTACTCCATCTTATGTTTCTTTCACG 550111
||||| ||||| ||||| || |||||||||||| ||||||||||| ||| |||||||
Sbjct 190017 GTTGAGATTATCGCCAACGAGCAAGGTAACAGAGTTACTCCATCTTTCGTTGCTTTCACT 190076
Query 550112 GAAACTGA-ACATTTAGTTGGTGATGCAGCAAAATATCAAGCCACTGGTAATCCTACCAA 550170
| || | ||| | | ||||| || || || | || || || || || ||
Sbjct 190077 CCAGAAGAGAGATTGA-TCGGTGAAGCTGCCAAGAACCAGGCTGCTTTGAACCCAGAGAA 190135
Query 550171 TACTATTTTTGATGCTAAACGTTTAATTGGAAGAAGTTTTAATGATTCGACTGTTCAGGC 550230
|||| | || || ||||| ||||| || || ||| ||| | |||| |||||||
Sbjct 190136 TACTGTCTTCGACGCTAAGCGTTTGATCGGTAGACGTTATGATGAAGAATCTGTTCAAAA 190195
Query 550231 AGATATGAAGCATTGGCCTTTCCAAATTGTTAATGTTTCTGGAAAACCTTATATTGAAG- 550289
||||||||| ||||||||| | | | |||| || || || ||||
Sbjct 190196 CGATATGAAGACCTGGCCTTTCAAGGTCATCGATGTCGAGGGTTCTCCAGTCATCGAAGT 190255
Query 550290 -CTACTCATGAAGGATCTGTTA--AACAATTT-TCACCAGAACAAATTTCATCTATGGTT 550345
| | | || || || | || | ||| || ||| || |||| || ||||||||
Sbjct 190256 CCAATACTTG--GG---TGAAACCAAGACTTTCTCCCCACAAGAAATCTCTGCTATGGTT 190310
Query 550346 TTAATGAAAATGAAACAAACAGCCAGTGCTTTTGTTGGTCAAGAAGTTACGGATGCAGTA 550405
|| | || ||||| | | || ||| ||| |||| | ||| | || ||
Sbjct 190311 TTGACCAAGATGAAGGAGATTGCTGAGGCTAAGATTGCTCAAAAGGTTGAAAAGGCTGTT 190370
Query 550406 ATAACTGTACCAGCATATTTTAATGACTCACAACGTCAAGCTACTAAAGATGCTGGACGT 550465
|| || || ||||| ||||| || || | ||| | |||||||| || ||||||||
Sbjct 190371 ATCACCGTTCCAGCTTATTTCAACGATGCTCAAAGACAAGCTACCAAGGATGCTGGTTCC 190430
Query 550466 ATTGCTGGACTTAATGTTCTTCGTATTATCAATGAACCTACTGCTGCTGCACTTGCATAT 550525
|| ||||| | || || | ||||||||||| ||||| || || ||||| |||| ||
Sbjct 190431 ATCGCTGGTTTGAACGTCTTGCGTATTATCAACGAACCAACCGCCGCTGCCATTGCTTAC 190490
Query 550526 GG 550527
||
Sbjct 190491 GG 190492
Score = 86.0 bits (94), Expect = 5e-11
Identities = 223/336 (66%), Gaps = 8/336 (2%)
Strand=Plus/Plus
Query 551925 AGAGCCAAACGAGCTCTTTCATCTGGTACTCAAACCACTATTGAAGTAGATTCATTATTT 551984
||||| || || || | || |||| |||||||||||| | ||||| || || || ||
Sbjct 191037 AGAGCTAAGAGAACTTTGTCCTCTGTCACTCAAACCACTGTCGAAGTTGACTCTTTGTTC 191096
Query 551985 GAGGGAATTGATTATAATACGCCTATTTCGAGGGCCAAATTTGAAGATATTTGTTCTGAT 552044
|| || |||| | || |||| | || || | ||| |||| | ||| ||
Sbjct 191097 GACGGTGAAGATTTCGAAACTTCTATCACCAGAGCTAGATTCGAAG--ACTTGAACTCTG 191154
Query 552045 CTCTTTAGAAAAACAATT--GAACCAGTAGAACAAGTTTTAAGAGATTCAAAGATTGATA 552102
|||||| ||| || || |||||||| |||||||| || | || | ||||| |
Sbjct 191155 CTCTTTTCAAATCCACTTTGGAACCAGTTGAACAAGTCTTGAAGGACGCTAAGATCTCCA 191214
Query 552103 AATCCAAAGTACATGAAATTGTGCTTGTTGGTGGATCTACAAGAATTCCTAAAATTCGCG 552162
| || || | | ||| |||| | |||||||| || || |||||||| || | |
Sbjct 191215 AGTCTCAAATCGACGAAGTTGTCTTGGTTGGTGGTTCCACTAGAATTCCAAAGGTCCAAA 191274
Query 552163 AAATGTTAAGTTC--TTATTTCAATGGTAAAAAATTAAATGAAAGTGTTAATCCAGATGA 552220
|| |||| || | | ||| | ||||| |||| | || | |||| ||||||||
Sbjct 191275 AATTGTT--GTCCGACTTCTTCGAAGGTAAGCAATTGGAGAAATCTATTAACCCAGATGA 191332
Query 552221 GGCTGTTGCCTATGGTGCCGCAATTCAAGCAGCTAT 552256
|| || || || ||||| || |||||| |||||
Sbjct 191333 AGCCGTCGCTTACGGTGCTGCTGTTCAAGGTGCTAT 191368
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 4029295576923920
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