Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Torulaspora_20delbrueckii_20[genbank_20GCA_5F001029055.1_202015-06- 17] 8 sequences; 11,524,969 total letters Query= NC_021312.1 Length=459984 Score E Sequences producing significant alignments: (Bits) Value seq8 125 2e-23 seq1 123 7e-23 seq3 93.3 1e-13 seq5 87.8 5e-12 >seq8 Length=940994 Score = 125 bits (138), Expect = 2e-23 Identities = 243/355 (68%), Gaps = 4/355 (1%) Strand=Plus/Plus Query 156147 ATATGCGAACCAGATGAGCGAACATTATGAATATGTAGTCCAATACCACCTGACCATTTA 156206 |||| ||||||| || |||| || ||||| |||| ||||||||||| | ||| Sbjct 325622 ATATATGAACCAGTAGAACGAATGTTGTGAATGTGTAAACCAATACCACCAGCGGTCTTA 325681 Query 156207 GAAATTTGAGCGCATTCCTTTACAGTATTGAAAATACCTTCAATAGAATCATCTTCCATT 156266 ||||| ||| |||||||| | ||||| | ||||||| || || || ||||| | ||| Sbjct 325682 GAAATCATAGCACATTCCTTCAAAGTATCGTAAATACCCTCGATGGAGTCATCCTTCATG 325741 Query 156267 GATAGTAGATAGCACGAACTTAATTGAGGTCGTGGTGTTCCAGCGTTGAATAGTGTAGGT 156326 | | ||| | || ||| | ||||| ||||| || ||||| ||||| || || || Sbjct 325742 GCGATTAGGAAACATGAAGACATCTGAGGGCGTGGAGTACCAGCATTGAAAAGAGTTGGA 325801 Query 156327 GTTGCATGAATAAAATACTTATTAGACATATAATCGTATGTCTCCTTAATCTTCTCAAGA 156386 | |||||||| || || | ||||| || || ||||| || ||| || Sbjct 325802 GAAGCATGAATGAAGTATCTCAAGGACATCAGATTATAAGTCTCAATAGCAGACTC--GA 325859 Query 156387 T-TAGAC-CCGTGAATACAGATAGAGACCCTCATCCACATATGCTGAGGACGCTCTACAA 156444 | | | | || ||||||| | || || ||||| |||||| |||||||| || | | Sbjct 325860 TGTCGTCACCATGAATACCAACAGCAACTCTCATAATCATATGTTGAGGACGTTCAGCGA 325919 Query 156445 TCACTCCATCAATTCGCAGAAGGTATGCGCGTTCCAGAGTTTTAAACCCGAAATA 156499 | |||| || | ||| || || | || ||||||||||| ||||| ||||| Sbjct 325920 CTTCACCATTTATCCTCAGCAGATAAGAACGCTCCAGAGTTTTGAACCCAAAATA 325974 Score = 100 bits (110), Expect = 8e-16 Identities = 155/221 (70%), Gaps = 3/221 (1%) Strand=Plus/Plus Query 155979 CCGTGATTCTTCCGTAGCTCTAAGAATTCCTCAATATCAGGATGGTGTGGCTCCAGATAC 156038 ||||| |||||||| | |||| ||| || || || | || ||| |||| ||| Sbjct 324914 CCGTGGTTCTTCCGGATATCTATGAAATCAAAGATGTCTGCGTGCCATGGTTCCAAGTAC 324973 Query 156039 ATAGCAAAACTACCATTCCTCTTG---CCACCCTGATCTACATACCGAGCAGTCTTATTG 156095 | ||| ||| ||| ||| ||| ||||| ||||| ||||| |||||||| || ||| Sbjct 324974 AAAGCGAAAGCACCTGGCCTTTTGTTACCACCTTGATCCACATAACGAGCAGTGTTGTTG 325033 Query 156096 AAGACACCTAGCATAGGAATAATACCATTGGAAGTGCCATTGGTTCCGCGAATATGCGAA 156155 ||||||| || ||| || || | || || ||||| || || || || ||||| ||| Sbjct 325034 AAGACACGTACCATGGGGATCAACCCGTTCGAAGTACCGTTAGTACCTGCAATATATGAA 325093 Query 156156 CCAGATGAGCGAACATTATGAATATGTAGTCCAATACCACC 156196 || | || |||| || || || || | ||||||||||| Sbjct 325094 CCCGTAGAACGAATGTTGTGTATGTGCAAACCAATACCACC 325134 Score = 95.1 bits (104), Expect = 4e-14 Identities = 267/409 (65%), Gaps = 6/409 (1%) Strand=Plus/Minus Query 288938 TAAATCCATCCATACTTGTTAAAATTTGATTAAGTGTTTGTTCCCTTTCATCATTTGAAC 288997 |||| |||||||| ||| | |||||| | || |||||||||||| || |||| Sbjct 494618 TAAAACCATCCATTTCAACTAACAATTGATTCAAAGTGGCTTCCCTTTCATCGTTAGAAC 494559 Query 288998 CTC---TTGAATCACCCGAATCGCTCCtttttttACCAACAGCATCAATTTCGTCAATGA 289054 | | | | | |||| | | || || ||||| | ||||||||||| |||| || Sbjct 494558 CACCCATGGCACCACCTTTACCTCT---TTCCTTACCGATTGCATCAATTTCATCAACGA 494502 Query 289055 AAATCACACACGGAGAATTTTGTCTCGCAATTGCAAATAATTCTCTTACACGGGATGCTC 289114 | || | | || | ||| ||| | | | || | || | || | || || | Sbjct 494501 AGATGATTGAAGGTGCCATTTTTCTACCTTGTTCGAAAAGATCACGAACTCTAGACGCAC 494442 Query 289115 CAAGACCAACATACATTTCTACAAATTCAGAAGCGGATACTTGAATGAATGTTACATTTG 289174 | | ||| ||| |||||||||||||||||||| | || || | |||| |||| || Sbjct 494441 CCACACCGACAAACATTTCTACAAATTCAGAACCAGAGACAGACAAAAATGGTACACCTG 494382 Query 289175 CTTCGCCTGCTACTGCCCTCGCCAGAAGTGTCTTACCTGTTCCAGGTGGTCCCTCTAATA 289234 |||| || || |||| | |||| | ||||||||||| |||||||| ||| ||| | Sbjct 494381 CTTCACCAGCAGTTGCCTTTGCCAATAAAGTCTTACCTGTACCAGGTGGACCCGATAAGA 494322 Query 289235 GAACTCCCTTTGGTACTTTTGCCCCAGCAGACTTATATTTCTCAGGGCTCTTTAAAAATT 289294 | || || | || ||||| | | ||||| |||||| |||| || || | Sbjct 494321 TGGCACCACGAGGAATCTTGGCCCCGAGTGCTGTGTATTTGTCAGGGTTCTTCAAGAAAT 494262 Query 289295 CTACAATTTCCTCAAGTTCATATTTTGCCTCATCACATCCTGCTACATC 289343 |||| |||| || || | || || || | ||| ||||| || || Sbjct 494261 GAACAAATTCCATAATCTCCTGCTTCGCTTCGTTACAACCTGCAACGTC 494213 >seq1 Length=1865156 Score = 123 bits (136), Expect = 7e-23 Identities = 343/513 (67%), Gaps = 20/513 (4%) Strand=Plus/Plus Query 251485 GCACCGTGTGAAATCATACAATCACGCTCCATTTCACCGAAACGAAGACCACCATCGCGA 251544 ||||| |||| |||||||||||||| |||||||||||||| | ||||||||||| | | Sbjct 832628 GCACCATGTGCGATCATACAATCACGTTCCATTTCACCGAATCTGAGACCACCATCTCTA 832687 Query 251545 GCCCTACCCTCGGCAGGCTGACGAGTGAGATTAACCATAGGACCGATGGAGCGGCTATGT 251604 | |||||||| | ||||| | || | | ||||||||| |||| || Sbjct 832688 GATCTACCCTCAACTGGCTGCCTTGTCAAAACTTGCATAGGACCAC--GAGCT-CTCGCG 832744 Query 251605 TG---CTTATCATTTACCATATGCTTGAGACGCTGGTAGAATGCGGGACCGATGAAGATG 251661 || ||| |||| ||||| || | ||||| |||||| | | ||||||| |||||| Sbjct 832745 TGAATCTTGTCATCCACCATGTGTCTTAGACGTTGGTAGTACGTAGGACCGAAGAAGAT- 832803 Query 251662 CTCGAAGGCATTTGCTCT---CCAGTTAGAGCGTTATACATAACTTCGTTTCCATTAGAT 251718 | || | ||| || | ||||| | | || ||||| |||||| ||| |||| Sbjct 832804 -TTGA-GCCATCAACTTTTTACCAGTATGTCCATTGTACATGACTTCGAAACCACGAGAT 832861 Query 251719 TCATAACCAAGTTTCTGTAGCTCTGAAGCAATATCACCAATCTTGAATTTGCTAAAACTG 251778 | ||||||| | | |||| || |||| | | | | | | | | || || Sbjct 832862 TGATAACCATGCTCACGTAGAAGCTTAGAAATACCTTCCACAGTAATGTCGGTGAA--TG 832919 Query 251779 GTGC--CGTCTCCGTAAAGACCCATTTGAATCAAC-ACTTTGCCTAAAAGTGTCTCTTTC 251835 | | |||| || | ||| | | | | | ||||| | | || || | Sbjct 832920 GAGATGCGTCACCTTCGTTACC-AGATAATGCTGCCACTTTACTAAGTAGACATTCGATT 832978 Query 251836 AGTTGGGCGATAGTCATACGACTGGGAATAGCATGGGGATTGATGATGATGTCGGGTTTC 251895 | || |||| ||||||||| ||||| || |||||||||||||| | || ||| Sbjct 832979 AAATGCGCGACCGTCATACGAGATGGAATGGCGTGGGGATTGATGATTAGATCTGGTACA 833038 Query 251896 AGTCCATCAGCAGTGAAGGGCATATCCTTTTCCTCAATAA-TGTTTCCAATAGTTCCCTT 251954 | || ||||||||||| ||||||||| | || | ||| || | |||||||| || || Sbjct 833039 ATACCTTCAGCAGTGAATGGCATATCC-TCTCTACCGTAAGTGATACCAATAGTACCTTT 833097 Query 251955 TTGTCCGTGACGAGAACTGAACTTATCACCAAT 251987 ||| ||||||||||| |||||| |||||||| Sbjct 833098 TTGACCGTGACGAGAGGCGAACTTGTCACCAAT 833130 Score = 84.2 bits (92), Expect = 6e-11 Identities = 179/262 (68%), Gaps = 9/262 (3%) Strand=Plus/Plus Query 156011 AATATCAGGATGGTGTGGCTCCAGATACATAGCAAAA--CTACCATTCC--TCTTGCCAC 156066 |||||| | ||| |||||| ||||| || |||| | || | || | ||||||| Sbjct 1272162 AATATCCGCATGCCATGGCTCGAGATAAAT-GCAATAAGCTCCGGGTCTCTTGTTGCCAC 1272220 Query 156067 CCTGATCTACATACCGAGCAGTCTTATTGAAGACACCTAGCATAGGAATAATACCATTGG 156126 ||||||||||||| | ||||| |||||||| || | ||||| |||| | || ||| Sbjct 1272221 CCTGATCTACATATCTTGCAGTGTTATTGAAAACGCGAAGCATTGGAACCAAGCCGCTGG 1272280 Query 156127 AAGTGCCATTGGTTCCGCGAATATGCGAACCAGATGAGCGAACATTATGAATATGTAGTC 156186 | |||||| | || ||| ||| ||| ||| | || || || ||| || | Sbjct 1272281 ACACACCATTGCTACCTGATATAAGCGCCCCATTTGATCTAATGTTGGAAACATGAAGGC 1272340 Query 156187 CAATACCACCTGACCATTTAGAAATTTGAGCGCATTCCTTT--ACAGTATTGAAAATACC 156244 ||||||||||||| ||| |||| | | || || | | | || ||||||||||| Sbjct 1272341 CAATACCACCTGAAGCTTTGGAAA--TCATGGCTGTCTTGTGAAGTGTCTTGAAAATACC 1272398 Query 156245 TTCAATAGAATCATCTTCCATT 156266 || ||||| || ||| |||| Sbjct 1272399 ATCTATAGAGTCCTCTATCATT 1272420 >seq3 Length=1635806 Score = 93.3 bits (102), Expect = 1e-13 Identities = 98/129 (76%), Gaps = 0/129 (0%) Strand=Plus/Plus Query 302552 TATCATAACCAATCATAATGTCTTCCATACTCTTGATTAAACGACGCTGAATATAACCAG 302611 |||| ||| || ||| || ||||||| | ||| | | |||||||||||||||||||| Sbjct 495084 TATCGTAATGAACCATGATATCTTCCAGAGCCTTAACAAGACGACGCTGAATATAACCAG 495143 Query 302612 TTGTAGATGTTTTTACAGCTGTATCAATTAGACCAACACGACCACCCATAGCATGGAAGA 302671 | | ||| || ||||| ||||| || | ||| ||||||||||||| || ||||||| Sbjct 495144 TCTCGGCTGTCTTGACAGCGGTATCGATCAAACCTTCACGACCACCCATTGCGTGGAAGA 495203 Query 302672 ATAGCTCTT 302680 | | |||| Sbjct 495204 AGAATTCTT 495212 >seq5 Length=1457367 Score = 87.8 bits (96), Expect = 5e-12 Identities = 90/117 (77%), Gaps = 3/117 (3%) Strand=Plus/Minus Query 301815 AATTTCTTCAATACGGGGAACACCACGGGTTACGTTAGACTTGGACGCAACACCAGCAAA 301874 |||||| | ||||| |||||||| | || ||||| | | || |||||||||||||| Sbjct 479502 AATTTCCTTGATACGAGGAACACCCAGTGTAACGTT---CATCGAAGCAACACCAGCAAA 479446 Query 301875 GTGGAAAGTATTCAGAGTTAATTGAGTAGTTGGCTCACCAATACTTTGTGCCGCAAT 301931 ||| ||||| |||| ||| | ||||||| |||||||||||| ||| || |||| Sbjct 479445 GTGAAAAGTTTTCAAAGTCATTTGAGTACCAGGCTCACCAATAGATTGAGCACCAAT 479389 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1471817449138696