Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Torulaspora_20delbrueckii_20[genbank_20GCA_5F001029055.1_202015-06- 17] 8 sequences; 11,524,969 total letters Query= NC_027778.1 Length=124244 Score E Sequences producing significant alignments: (Bits) Value seq5 199 3e-46 seq2 96.9 3e-15 >seq5 Length=1457367 Score = 199 bits (220), Expect = 3e-46 Identities = 405/593 (68%), Gaps = 10/593 (2%) Strand=Plus/Minus Query 43696 TAGGTTTGTCGTGTTTCCAATTCAATATCATGACATATGGCAAATGTACAAAAAAGCACA 43755 ||| ||||| | || ||||| |||| ||||| || |||||| ||| || | |||| | Sbjct 1119688 TAGATTTGTTCTATTCCCAATCAAATACCATGAGATTTGGCAAGCGTATAAGAGAGCAGA 1119629 Query 43756 GGCGTCATTTTGGACAGCAGAAGAAGTTGATTTGACTAAAGACTTAGCACATTGGATTG- 43814 ||| || || ||||| || ||||| ||||| | | || || | |||||| | Sbjct 1119628 GGCTTCGTTCTGGACGGCCGAAGAGATTGATCTATCGAAGGATATTCATGATTGGAATAA 1119569 Query 43815 -CATTAAAACCACAA-GAAAAACATTTTATATCTTTGGTTTTGGCGTTTTTTGCTGCGAG 43872 | | || | || |||| | ||| || || || ||||| || |||||||| Sbjct 1119568 CCGTATGAATGAGAACGAAAGATTTTTCATCTCCCGTGTCTTGGCCTTCTTTGCTGCCTC 1119509 Query 43873 CGACGGGATAGTCAATGAAAATTTGGTT-AGTCGGTTTGCGCAAGAAGTTCAATTACCAG 43931 || || ||||| ||||| ||||| ||| || | | ||| ||||| ||| | |||| Sbjct 1119508 TGATGGTATAGTAAATGAGAATTTAGTTGAGAATTTCAGTGCA-GAAGTGCAAATTCCAG 1119450 Query 43932 AAGCACGATGTTTTTATGGGTTTCAAATTGCCATAGAAAATATTCATTCGGAAATGTACA 43991 |||| |||||||||||| || ||||| || ||||| ||||| || || | || Sbjct 1119449 AAGCTAAATGTTTTTATGGTTTCCAAATCATGATGGAAAACATTCACTCAGAGACCTATT 1119390 Query 43992 GTCTTCTGATAGATACGTACATCAAAGATGGGCACGAGAAGC-ATCGATTGTTTAATGCG 44050 || | || ||||| || ||||| ||| | || |||| || ||||| |||||| Sbjct 1119389 CCCTGTTAATTGATACTTATATCAAGGATCCAAAGGA-AAGCGATTTCTTGTTCAATGCG 1119331 Query 44051 ATAGAAACAGTACCTGCGATTAAACATAAAGCAGACTGGGCCCTTAAATGGATAAATTCA 44110 || |||| | ||| ||||||| | || || || ||||| | | |||||| | Sbjct 1119330 ATCGAAAACATTCCTCAGATTAAAGAGAAGGCCGAATGGGCTATCAGATGGATTCAGGAC 1119271 Query 44111 AATGATTCT---TTTGGAGAACGACTTGTCGCGTTTGCAGTTGTGGAAGGCATTTTCTTT 44167 | ||| ||| || | ||| || | || || ||||| | | ||||| ||||||||| Sbjct 1119270 AGTGAATCTATCTTCGCAGAGAGATTGGTTGCTTTTGCTGCCATTGAAGGTATTTTCTTT 1119211 Query 44168 TCAGGATCGTTTGCGGCCATATTTTGGTTAAAGAAACGAGGTTTGATGCCTGGGTTGACG 44227 ||||| || ||||| || || || ||||| ||||| |||| | ||||| || | ||| Sbjct 1119210 TCAGGTTCCTTTGCTGCTATCTTCTGGTTGAAGAAGAAAGGTCTAATGCCAGGTCTAACG 1119151 Query 44228 TTTTCAAATGAGTTAATAAGTCGTGATGAAGGCTTACATTGCGATTTTGCTTG 44280 ||||| || || || || | | |||||||| |||||| ||||||||| || Sbjct 1119150 TTTTCTAACGAATTGATCTGCAGAGATGAAGGTTTACATACCGATTTTGCATG 1119098 >seq2 Length=1777742 Score = 96.9 bits (106), Expect = 3e-15 Identities = 294/448 (66%), Gaps = 31/448 (7%) Strand=Plus/Plus Query 40845 GGATTACAAGATAGGGATGAAGGTGATCTTGGTCCTGTTTATGGATTTCAGTCGCGACAT 40904 ||||| || || || ||| || ||| | || || |||||||||||||| | | | ||| Sbjct 558736 GGATTGCACGAGAGACGTGAGGGAGATTTGGGGCCGGTTTATGGATTTCAATGGAGGCAT 558795 Query 40905 TTTGGAGCAAAATAT--GACA--CTATGTACTCTGATTATACCAATAAAGGAATGGATCA 40960 ||||| || ||||| |||| | ||| || || || || ||||| | ||||| Sbjct 558796 TTTGGTGCTAAATACAAGACATGCGATG-AC---GACTACACTGGCCAAGGATTTGATCA 558851 Query 40961 ATTACAGTGCGTTATAGAT----ACGATTAAATCCGATCCCGATAGCCGACGTATAATAT 41016 ||| | || | | ||| | | | || | |||| | | || | || || Sbjct 558852 ATT---GGCCGATTT-GATCTCAAAGCTAAAGAACAATCCATACGACAGAAGAATCATCA 558907 Query 41017 TGTGCGCGTGGAACCCAACGGACGTACATTTGATGGCATTGCCACCTTGTCATTTGTTAT 41076 || | || ||||| ||| | || | | | |||||| ||||| || |||||| | || | Sbjct 558908 TGAGTGCATGGAATCCACCAGATTTCCCATCGATGGCTTTGCCGCCATGTCATGTCTTTT 558967 Query 41077 GTCAGTTTTACGT-----TTGC----AATGGTGA------ACTGTCATGTCAATTGTATC 41121 |||||| || || || | ||||| | ||| || |||| | |||||| Sbjct 558968 CTCAGTTCTATGTCAGTTTTCCTGAGAATGGAAAGCCAAGACTTTCTTGTCTACTGTATC 559027 Query 41122 AAAGATCAGGTGACATGGGACTAGGGGTCCCGTTTAACATAGCGAGTTATGCTCTGCTCA 41181 ||||||| |||| ||||||||||| || || || ||||| || ||||| || || | Sbjct 559028 AAAGATCCTGTGATATGGGACTAGGAGTGCCCTTCAACATTGCATCGTATGCGCTTCTGA 559087 Query 41182 CGTATATGATTGCACACGTTACCAATTTAAAACCTGGTGAATTTGTTCACACGTTAGGAG 41241 | | ||| |||| || || | || | |||| ||||| ||| |||| || | || | Sbjct 559088 CCAAGATGGTTGCCCATGTCTGCGATATGGAACCGGGTGAGTTTATTCATACCATGGGCG 559147 Query 41242 ATGGACATATTTACATTAATCACATAGA 41269 ||| || |||||| ||||||| || Sbjct 559148 ATGCTCACGTTTACAAAGATCACATCGA 559175 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397455961248040