Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Torulaspora_20delbrueckii_20[genbank_20GCA_5F002214845.1_202017-07- 05] 56 sequences; 9,683,383 total letters Query= NC_005309.1 Length=359853 Score E Sequences producing significant alignments: (Bits) Value seq4 214 4e-50 seq6 150 4e-31 seq8 120 7e-22 seq2 120 7e-22 >seq4 Length=1065440 Score = 214 bits (236), Expect = 4e-50 Identities = 384/550 (70%), Gaps = 12/550 (2%) Strand=Plus/Minus Query 268760 GCTTCTTTTTGGACTGTAGAAGAAGTAGATCTGTCTTATGAC-TTAATAGATTGGAAAAA 268818 ||||| || ||||| | ||||| | |||||||| | || || || |||||||| || Sbjct 811740 GCTTCGTTCTGGACGGCCGAAGAGATTGATCTGTCGAAGGATATTCAT-GATTGGAATAA 811682 Query 268819 TTTAA--AACCAGAA-GAAAGAAGATTTATATCTTATATTCTTGCGTTTTTTGCAGTTAG 268875 | || |||| |||||| || || || | | | || || ||||| | Sbjct 811681 CCGTATGAATGAGAACGAAAGATTTTTCATCTCCCGTGTCTTGGCCTTCTTTGCTGCCTC 811622 Query 268876 TGATGGTATCGTTAACGAAAATCTAGTAGAGAAGTTCTGTCAAGAGGTACAGATTCCTGA 268935 ||||||||| || || || ||| |||| ||||| ||| || ||| || || ||||| || Sbjct 811621 TGATGGTATAGTAAATGAGAATTTAGTTGAGAATTTCAGTGCAGAAGTGCAAATTCCAGA 811562 Query 268936 AGCCAGATGTTTTTACGGATTCCAGATAGCTATAGAAAATATTCATTCAGAGATGTACAG 268995 ||| | |||||| || || ||||| || || ||||| ||||| ||||||| || Sbjct 811561 AGCTAAATGTTTCTATGGTTTCCAAATCATGATGGAAAACATTCACTCAGAGACCTATTC 811502 Query 268996 TCTATTAATAGATACTTATATAGATGATAACAACGAAAAGAAAAGACT-ATTTTCTTCTA 269054 || ||||| ||||||||||| | ||| ||| | |||| | || ||| | | | Sbjct 811501 CCTGTTAATTGATACTTATATCAAGGATC-CAAAGGAAAGCGATTTCTTATTCAATGCGA 811443 Query 269055 T-GAGAACTATGGACTGTGTGAGaaaaaaaTCTGAATGGGCTCTGAAATGGATAAACGAT 269113 | || ||| | | | | | | | || | ||||||||| | | |||||| | || Sbjct 811442 TTGAAAACATTCCTCAGATTAA-AGAGAAGGCCGAATGGGCTATCAGATGGATTCAGGAC 811384 Query 269114 AGCGCGCCT---TACGGAGAAAGGTTAGTTGCTTTTGCCGCTGTAGAAGGTATATTCTTT 269170 || | || | || ||| || || |||||||| || || | |||||||| |||||| Sbjct 811383 AGTGAATCTATCTTCGCAGAGAGATTGGTTGCTTTCGCTGCCATTGAAGGTATTTTCTTT 811324 Query 269171 TCGGGGTCTTTTGCCGCTATCTTTTGGTTGAAGAAAAGAGGCCTTATGCCAGGATTAACT 269230 || || || ||||| |||||||| ||||||||||| | ||| || |||||||| |||| Sbjct 811323 TCAGGTTCCTTTGCTGCTATCTTCTGGTTGAAGAAGAAAGGTCTAATGCCAGGTCTAACG 811264 Query 269231 TTCTCTAACGAATTGATAAGCAGGGACGAAGGTTTACACTGCGACTTCGCTTGTTTATTA 269290 || |||||||||||||| |||| || ||||||||||| ||| || || ||| || || Sbjct 811263 TTTTCTAACGAATTGATCTGCAGAGATGAAGGTTTACATACCGATTTTGCATGTCTACTA 811204 Query 269291 TTTACTAATT 269300 ||| || ||| Sbjct 811203 TTTGCTCATT 811194 >seq6 Length=935435 Score = 150 bits (166), Expect = 4e-31 Identities = 161/210 (77%), Gaps = 2/210 (1%) Strand=Plus/Plus Query 104351 ACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCT 104410 |||||||| || |||||||| ||||| || || || || ||||||||||| || |||||| Sbjct 586970 ACTAGATGCAAAGTAGATTCCTTCTGGATGTTGTAATCGGATAGAGTTCTTCCATCTTCT 587029 Query 104411 AGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGA 104470 ||||| || || || || || | || ||||| ||||| || || ||||||||||| ||| Sbjct 587030 AGTTGCTTACCTGCGAAGATCAATCTTTGTTGGTCAGGTGGAATACCTTCTTTATCTTGA 587089 Query 104471 ATCTTTGCT-TTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTT 104529 ||| ||||| || ||||| || | ||||| | || ||||| || || || || || Sbjct 587090 ATC-TTGCTCTTGACATTGTCAATAGTATCAGAGGACTCAACCTCCAGGGTGATGGTTTT 587148 Query 104530 ACCAGTAAGTGTTTTTACAAATATCTGCAT 104559 |||||| | || || ||||| |||||||| Sbjct 587149 ACCAGTTAAAGTCTTGACAAAAATCTGCAT 587178 Score = 147 bits (162), Expect = 5e-30 Identities = 160/210 (76%), Gaps = 2/210 (1%) Strand=Plus/Plus Query 104351 ACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCT 104410 |||||||| || |||||||| ||||| || || || || ||||||||||| || |||||| Sbjct 586058 ACTAGATGCAAAGTAGATTCCTTCTGGATGTTGTAATCGGATAGAGTTCTTCCATCTTCT 586117 Query 104411 AGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGA 104470 ||||| || || || || || | || ||||| ||||| || || ||||||||||| ||| Sbjct 586118 AGTTGCTTACCTGCGAAGATCAATCTTTGTTGGTCAGGTGGAATACCTTCTTTATCTTGA 586177 Query 104471 ATCTTTGCT-TTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTT 104529 ||| ||||| || ||||| || | ||||| | || ||||| || || || || || Sbjct 586178 ATC-TTGCTCTTGACATTGTCAATAGTATCAGAGGACTCAACCTCCAGGGTGATGGTTTT 586236 Query 104530 ACCAGTAAGTGTTTTTACAAATATCTGCAT 104559 |||||| | || || || || |||||||| Sbjct 586237 ACCAGTTAAAGTCTTGACGAAGATCTGCAT 586266 Score = 147 bits (162), Expect = 5e-30 Identities = 160/210 (76%), Gaps = 2/210 (1%) Strand=Plus/Plus Query 104351 ACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCT 104410 |||||||| || |||||||| ||||| || || || || ||||||||||| || |||||| Sbjct 586286 ACTAGATGCAAAGTAGATTCCTTCTGGATGTTGTAATCGGATAGAGTTCTTCCATCTTCT 586345 Query 104411 AGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGA 104470 ||||| || || || || || | || ||||| ||||| || || ||||||||||| ||| Sbjct 586346 AGTTGCTTACCTGCGAAGATCAATCTTTGTTGGTCAGGTGGAATACCTTCTTTATCTTGA 586405 Query 104471 ATCTTTGCT-TTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTT 104529 ||| ||||| || ||||| || | ||||| | || ||||| || || || || || Sbjct 586406 ATC-TTGCTCTTGACATTGTCAATAGTATCAGAGGACTCAACCTCCAGGGTGATGGTTTT 586464 Query 104530 ACCAGTAAGTGTTTTTACAAATATCTGCAT 104559 |||||| | || || || || |||||||| Sbjct 586465 ACCAGTTAAAGTCTTGACGAAGATCTGCAT 586494 Score = 147 bits (162), Expect = 5e-30 Identities = 160/210 (76%), Gaps = 2/210 (1%) Strand=Plus/Plus Query 104351 ACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCT 104410 |||||||| || |||||||| ||||| || || || || ||||||||||| || |||||| Sbjct 586514 ACTAGATGCAAAGTAGATTCCTTCTGGATGTTGTAATCGGATAGAGTTCTTCCATCTTCT 586573 Query 104411 AGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGA 104470 ||||| || || || || || | || ||||| ||||| || || ||||||||||| ||| Sbjct 586574 AGTTGCTTACCTGCGAAGATCAATCTTTGTTGGTCAGGTGGAATACCTTCTTTATCTTGA 586633 Query 104471 ATCTTTGCT-TTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTT 104529 ||| ||||| || ||||| || | ||||| | || ||||| || || || || || Sbjct 586634 ATC-TTGCTCTTGACATTGTCAATAGTATCAGAGGACTCAACCTCCAGGGTGATGGTTTT 586692 Query 104530 ACCAGTAAGTGTTTTTACAAATATCTGCAT 104559 |||||| | || || || || |||||||| Sbjct 586693 ACCAGTTAAAGTCTTGACGAAGATCTGCAT 586722 Score = 147 bits (162), Expect = 5e-30 Identities = 160/210 (76%), Gaps = 2/210 (1%) Strand=Plus/Plus Query 104351 ACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCT 104410 |||||||| || |||||||| ||||| || || || || ||||||||||| || |||||| Sbjct 586742 ACTAGATGCAAAGTAGATTCCTTCTGGATGTTGTAATCGGATAGAGTTCTTCCATCTTCT 586801 Query 104411 AGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGA 104470 ||||| || || || || || | || ||||| ||||| || || ||||||||||| ||| Sbjct 586802 AGTTGCTTACCTGCGAAGATCAATCTTTGTTGGTCAGGTGGAATACCTTCTTTATCTTGA 586861 Query 104471 ATCTTTGCT-TTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTT 104529 ||| ||||| || ||||| || | ||||| | || ||||| || || || || || Sbjct 586862 ATC-TTGCTCTTGACATTGTCAATAGTATCAGAGGACTCAACCTCCAGGGTGATGGTTTT 586920 Query 104530 ACCAGTAAGTGTTTTTACAAATATCTGCAT 104559 |||||| | || || || || |||||||| Sbjct 586921 ACCAGTTAAAGTCTTGACGAAGATCTGCAT 586950 Score = 141 bits (156), Expect = 2e-28 Identities = 159/210 (76%), Gaps = 2/210 (1%) Strand=Plus/Plus Query 104351 ACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCT 104410 || ||||| || |||||||| ||||| || || || || ||||||||||| || |||||| Sbjct 585602 ACCAGATGCAAAGTAGATTCCTTCTGGATGTTGTAATCGGATAGAGTTCTTCCATCTTCT 585661 Query 104411 AGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGA 104470 ||||| || || || || || | || ||||| ||||| || || ||||||||||| ||| Sbjct 585662 AGTTGCTTACCTGCGAAGATCAATCTTTGTTGGTCAGGTGGAATACCTTCTTTATCTTGA 585721 Query 104471 ATCTTTGCT-TTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTT 104529 ||| ||||| || ||||| || | ||||| | || ||||| || || || || || Sbjct 585722 ATC-TTGCTCTTGACATTGTCAATAGTATCAGAGGACTCAACCTCCAGGGTGATGGTTTT 585780 Query 104530 ACCAGTAAGTGTTTTTACAAATATCTGCAT 104559 |||||| | || || || || |||||||| Sbjct 585781 ACCAGTTAAAGTCTTGACGAAGATCTGCAT 585810 Score = 141 bits (156), Expect = 2e-28 Identities = 159/210 (76%), Gaps = 2/210 (1%) Strand=Plus/Plus Query 104351 ACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCT 104410 || ||||| || |||||||| ||||| || || || || ||||||||||| || |||||| Sbjct 585830 ACCAGATGCAAAGTAGATTCCTTCTGGATGTTGTAATCGGATAGAGTTCTTCCATCTTCT 585889 Query 104411 AGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGA 104470 ||||| || || || || || | || ||||| ||||| || || ||||||||||| ||| Sbjct 585890 AGTTGCTTACCTGCGAAGATCAATCTTTGTTGGTCAGGTGGAATACCTTCTTTATCTTGA 585949 Query 104471 ATCTTTGCT-TTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTT 104529 ||| ||||| || ||||| || | ||||| | || ||||| || || || || || Sbjct 585950 ATC-TTGCTCTTGACATTGTCAATAGTATCAGAGGACTCAACCTCCAGGGTGATGGTTTT 586008 Query 104530 ACCAGTAAGTGTTTTTACAAATATCTGCAT 104559 |||||| | || || || || |||||||| Sbjct 586009 ACCAGTTAAAGTCTTGACGAAGATCTGCAT 586038 >seq8 Length=676247 Score = 120 bits (132), Expect = 7e-22 Identities = 165/231 (71%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 104333 CCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGAT 104392 || ||||| | || || || | || || || ||||| || || || || |||||||| Sbjct 115819 CCACCTCTCAATCTTAGGACCAAGTGCAAAGTGGATTCCTTTTGGATGTTGTAGTCAGAC 115878 Query 104393 AGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGT 104452 | ||||||||| ||||| | ||| || |||||||| || | || ||||| ||||| || Sbjct 115879 AAAGTTCTACCATCTTCCAATTGCTTACCAGCAAAGATCAATCTTTGTTGGTCAGGTGGG 115938 Query 104453 ATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACC 104512 || || || || || || ||||| | || ||||| || | || || || ||| || Sbjct 115939 ATACCCTCCTTGTCTTGGATCTTAGACTTGACATTGTCAATAGTGTCAGAAGATTCGACT 115998 Query 104513 TCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCATTTTG 104563 || | |||||||||||||| || | || || || || || ||||| ||| Sbjct 115999 TCCAAGGTAATAGTCTTACCGGTCAAAGTCTTGACGAAAATTTGCATCTTG 116049 >seq2 Length=1385486 Score = 120 bits (132), Expect = 7e-22 Identities = 150/206 (73%), Gaps = 0/206 (0%) Strand=Plus/Plus Query 104330 ATTCCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCA 104389 || || ||||| | || || || | |||| || ||||| || || || || ||||| Sbjct 975406 ATACCACCTCTCAATCTTAGAACCAAGTGTAGAGTGGATTCCTTTTGGATGTTGTAGTCG 975465 Query 104390 GATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGA 104449 || | ||||||||||||||| | ||| || |||||||| || | || ||||| ||||| Sbjct 975466 GACAAAGTTCTACCGTCTTCCAATTGCTTACCAGCAAAGATCAATCTTTGTTGGTCAGGT 975525 Query 104450 GGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCT 104509 || || ||||| || || |||||||||| || ||||| || | || || || ||| Sbjct 975526 GGGATACCTTCCTTGTCTTGAATCTTTGACTTGACATTGTCAATAGTGTCAGAAGATTCA 975585 Query 104510 ACCTCTAGTGTAATAGTCTTACCAGT 104535 || || | || || ||||||||||| Sbjct 975586 ACTTCCAAAGTGATGGTCTTACCAGT 975611 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1151397573871648