Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Torulaspora_20delbrueckii_20[genbank_20GCA_5F002214845.1_202017-07- 05] 56 sequences; 9,683,383 total letters Query= NC_021247.1 Length=228750 Score E Sequences producing significant alignments: (Bits) Value seq4 217 2e-51 seq8 129 9e-25 seq6 114 2e-20 seq2 107 3e-18 >seq4 Length=1065440 Score = 217 bits (240), Expect = 2e-51 Identities = 554/834 (66%), Gaps = 24/834 (3%) Strand=Plus/Plus Query 17860 AGCTTTTTTGTATTCTCCGACTTTTTTCTCGAAGAAATTTGTCTTTCCTTCCAATGATAT 17919 ||| || | ||| || |||| | || ||||| ||||| ||||| || ||| || || Sbjct 810916 AGCCTTCTGGTAGTCAGAGACTCTCTTTTCGAAAAAATTGGTCTTACCAGCCAGCGAGAT 810975 Query 17920 TAAATTCATAAAATCAAATGGATTAGTGGTTTTATAATATTTTTCTTGTATT--AATTCG 17977 | ||| ||||||||||| ||||| || || |||| ||||| || || Sbjct 810976 GTTCTCCATGAAATCAAATGGGTTAGTCACGTTGAAAAATTT--CTTGTTCCCGAAAGCG 811033 Query 17978 TATAATAATCTATCTGCTACAAATTCGACATATTGTGACATCAAATCGCAATTCATACCT 18037 | || |||||| || || || || || || || ||||| ||| |||||||| Sbjct 811034 ACCAGTAGTCTATCAGCGACGAACTCAACGTACTGGTTCATCAGGTCGGCGTTCATACCC 811093 Query 18038 AGTAGTCTGAAA--GGTAGAGCATCAAT-AATAAATTCTTTCTCTATCTCAACAGACTCT 18094 | || |||| ||||||||||| || || | ||||| || ||||| || | || Sbjct 811094 AATAAA--GAAACGGGTAGAGCATCGATGAAGTACCTCTTT-TCGATCTCGACGGCTTCA 811150 Query 18095 TTTATTATGTTT---ATTACCCTAGATTTTGGCAATTTATTAATTATGTGATTATAATAT 18151 | || || ||| || | || | |||| ||||| | | ||| | | | Sbjct 811151 GTAATAATCTTTTCGATAATGGAAGGATCTGGC---TTATTCTTCAAATGAGCAAA---T 811204 Query 18152 AATAAACACGCAAAATCAGTGTGTAAACCTTCATCTCTGGATATTAATTCGTTACTAAAC 18211 | || ||| |||||||| || |||||||||||||||||| | || ||||||||| |||| Sbjct 811205 AGTAGACATGCAAAATCGGTATGTAAACCTTCATCTCTGCAGATCAATTCGTTAGAAAAC 811264 Query 18212 GTTAACCCGGGCATTATACCTCttttttttAGCCAAAATATCGATGCGAAACTACTAGAA 18271 |||| || ||||||| |||| | || || | ||| || || | || || || ||| Sbjct 811265 GTTAGACCTGGCATTAGACCTTTCTTCTTCAACCAGAAGATAGCAGCAAAGGAACCTGAA 811324 Query 18272 AAGAATATACCCTCAACGCACGCGAACGCTATTAATCTTTCAGCAAAACTGTATTTATTG 18331 ||||| ||||| |||| | ||||| || | ||||| || || || | ||| | || Sbjct 811325 AAGAAAATACCTTCAATGGCAGCGAAAGCAACCAATCTCTCTGCGAAGATAGATTCACTG 811384 Query 18332 CTCAGTATCCATTTTTGTGCCCATTCTCCTTNNNNNNNNATACACGGTATACTCTCTATA 18391 | | |||||| | |||||||| | | || || || | || || Sbjct 811385 TCCTGAATCCATCTGATAGCCCATTCGGCCTTCTCTTTAATCTGAGGAATGTTTTCAATC 811444 Query 18392 GCATTAAACAAATCATCTTTTTCTTTGGAATCTTTTATATAAGTGTCGATTAACAAAGAA 18451 ||||| || || ||| |||| || | ||| || |||||||| || ||||||| ||| Sbjct 811445 GCATTGAATAAGAAATCGCTTTCCTTTGGATCCTTGATATAAGTATCAATTAACAGGGAA 811504 Query 18452 TACATTTCAGAATGTATGCTTTCCATAGCTATCTGAAAACTATAAAACGATCTAGCCTCG 18511 || | || || || ||| ||||||| || || |||| ||| || || |||| || Sbjct 811505 TAGGTCTCTGAGTGAATGTTTTCCATCATGATTTGGAAACCATAGAAACATTTAGCTTCT 811564 Query 18512 GGATATTGAATCTC-GCTATAAAATCTTTCTACCAAATTCTCATTAACTATACCGTCAGC 18570 ||| ||| | || || | |||| | || || ||||||||||| |||||||| |||| Sbjct 811565 GGAATTTGCACTTCTGCACTGAAAT-TCTCAACTAAATTCTCATTTACTATACCATCAGA 811623 Query 18571 AGATGCGAAAAATGCCAAAACATATTTAATGAAATGTTTTTCATTATCCTTGA---GATT 18627 | || || || ||||| ||| |||||| | |||| || || || | | || Sbjct 811624 GGCAGCAAAGAAGGCCAAGACACGGGAGATGAAAAATCTTTCGTTCTCATTCATACGGTT 811683 Query 18628 GTTCCATTCATCTATATCTTTTGATAGATCAACTTCTTCCGATGTCCAAAAAGA 18681 ||||| |||| ||||| || || ||||||| ||||| | ||||| || || Sbjct 811684 ATTCCAATCATGAATATCCTTCGACAGATCAATCTCTTCGGCCGTCCAGAACGA 811737 >seq8 Length=676247 Score = 129 bits (142), Expect = 9e-25 Identities = 170/234 (73%), Gaps = 4/234 (2%) Strand=Plus/Minus Query 155820 AAAATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGAT 155879 || |||||||| || | || || ||||| || || |||||||| || ||||||||| | Sbjct 116048 AAGATGCAAATTTTCGTCAAGACTTTGACCGGTAAGACTATTACCTTGGAAGTCGAATCT 115989 Query 155880 TCTGATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAA 155939 ||||| | |||| || || || ||| || ||||| || || || || || || || Sbjct 115988 TCTGACACTATTGACAATGTCAAGTCTAAGATCCAAGACAAGGAGGGTATCCCACCTGAC 115929 Query 155940 CAACAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTAT 155999 |||||||||||||| | ||| |||||||| | |||||| |||||||| || || || Sbjct 115928 CAACAAAGATTGATCTTTGCTGGTAAGCAATTGGAAGATGGTAGAACTTTGTCTGACTAC 115869 Query 156000 AATATATCCAAA--GAGGCGACGCTTCATTTAGTGTTAAGATTAAGAGGCGGTG 156051 | | ||||||| || | || | || || || ||||||| ||||| |||| Sbjct 115868 A--ACATCCAAAAGGAATCCACTTTGCACTTGGTCCTAAGATTGAGAGGTGGTG 115817 >seq6 Length=935435 Score = 114 bits (126), Expect = 2e-20 Identities = 156/218 (72%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 ||||| || ||| | || || || ||||| ||||| || || | || || || ||| Sbjct 587178 ATGCAGATTTTTGTCAAGACTTTAACTGGTAAAACCATCACCCTGGAGGTTGAGTCCTCT 587119 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 |||| |||| || || || | || || |||||||||||||| || || || || ||| Sbjct 587118 GATACTATTGACAATGTCAAGAGCAAGATTCAAGATAAAGAAGGTATTCCACCTGACCAA 587059 Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAAT 156002 ||||||||||| | || |||||||| || |||||| |||||| |||| ||||| || Sbjct 587058 CAAAGATTGATCTTCGCAGGTAAGCAACTAGAAGATGGAAGAACTCTATCCGATTACAAC 586999 Query 156003 ATATCCAAAGAGGCGACGCTTCATTTAGTGTTAAGATT 156040 || || || | || | ||| |||| || ||||| Sbjct 586998 ATCCAGAAGGAATCTACTTTGCATCTAGTTTTGAGATT 586961 Score = 109 bits (120), Expect = 8e-19 Identities = 155/218 (71%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 ||||| || || | || || || ||||| ||||| || || | || || || ||| Sbjct 586266 ATGCAGATCTTCGTCAAGACTTTAACTGGTAAAACCATCACCCTGGAGGTTGAGTCCTCT 586207 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 |||| |||| || || || | || || |||||||||||||| || || || || ||| Sbjct 586206 GATACTATTGACAATGTCAAGAGCAAGATTCAAGATAAAGAAGGTATTCCACCTGACCAA 586147 Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAAT 156002 ||||||||||| | || |||||||| || |||||| |||||| |||| ||||| || Sbjct 586146 CAAAGATTGATCTTCGCAGGTAAGCAACTAGAAGATGGAAGAACTCTATCCGATTACAAC 586087 Query 156003 ATATCCAAAGAGGCGACGCTTCATTTAGTGTTAAGATT 156040 || || || | || | ||| |||| || ||||| Sbjct 586086 ATCCAGAAGGAATCTACTTTGCATCTAGTTTTGAGATT 586049 Score = 109 bits (120), Expect = 8e-19 Identities = 155/218 (71%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 ||||| || || | || || || ||||| ||||| || || | || || || ||| Sbjct 586494 ATGCAGATCTTCGTCAAGACTTTAACTGGTAAAACCATCACCCTGGAGGTTGAGTCCTCT 586435 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 |||| |||| || || || | || || |||||||||||||| || || || || ||| Sbjct 586434 GATACTATTGACAATGTCAAGAGCAAGATTCAAGATAAAGAAGGTATTCCACCTGACCAA 586375 Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAAT 156002 ||||||||||| | || |||||||| || |||||| |||||| |||| ||||| || Sbjct 586374 CAAAGATTGATCTTCGCAGGTAAGCAACTAGAAGATGGAAGAACTCTATCCGATTACAAC 586315 Query 156003 ATATCCAAAGAGGCGACGCTTCATTTAGTGTTAAGATT 156040 || || || | || | ||| |||| || ||||| Sbjct 586314 ATCCAGAAGGAATCTACTTTGCATCTAGTTTTGAGATT 586277 Score = 109 bits (120), Expect = 8e-19 Identities = 155/218 (71%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 ||||| || || | || || || ||||| ||||| || || | || || || ||| Sbjct 586722 ATGCAGATCTTCGTCAAGACTTTAACTGGTAAAACCATCACCCTGGAGGTTGAGTCCTCT 586663 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 |||| |||| || || || | || || |||||||||||||| || || || || ||| Sbjct 586662 GATACTATTGACAATGTCAAGAGCAAGATTCAAGATAAAGAAGGTATTCCACCTGACCAA 586603 Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAAT 156002 ||||||||||| | || |||||||| || |||||| |||||| |||| ||||| || Sbjct 586602 CAAAGATTGATCTTCGCAGGTAAGCAACTAGAAGATGGAAGAACTCTATCCGATTACAAC 586543 Query 156003 ATATCCAAAGAGGCGACGCTTCATTTAGTGTTAAGATT 156040 || || || | || | ||| |||| || ||||| Sbjct 586542 ATCCAGAAGGAATCTACTTTGCATCTAGTTTTGAGATT 586505 Score = 109 bits (120), Expect = 8e-19 Identities = 155/218 (71%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 ||||| || || | || || || ||||| ||||| || || | || || || ||| Sbjct 586950 ATGCAGATCTTCGTCAAGACTTTAACTGGTAAAACCATCACCCTGGAGGTTGAGTCCTCT 586891 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 |||| |||| || || || | || || |||||||||||||| || || || || ||| Sbjct 586890 GATACTATTGACAATGTCAAGAGCAAGATTCAAGATAAAGAAGGTATTCCACCTGACCAA 586831 Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAAT 156002 ||||||||||| | || |||||||| || |||||| |||||| |||| ||||| || Sbjct 586830 CAAAGATTGATCTTCGCAGGTAAGCAACTAGAAGATGGAAGAACTCTATCCGATTACAAC 586771 Query 156003 ATATCCAAAGAGGCGACGCTTCATTTAGTGTTAAGATT 156040 || || || | || | ||| |||| || ||||| Sbjct 586770 ATCCAGAAGGAATCTACTTTGCATCTAGTTTTGAGATT 586733 Score = 107 bits (118), Expect = 3e-18 Identities = 133/182 (73%), Gaps = 0/182 (0%) Strand=Plus/Minus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 ||||| || || | || || || ||||| ||||| || || | || || || ||| Sbjct 585810 ATGCAGATCTTCGTCAAGACTTTAACTGGTAAAACCATCACCCTGGAGGTTGAGTCCTCT 585751 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 |||| |||| || || || | || || |||||||||||||| || || || || ||| Sbjct 585750 GATACTATTGACAATGTCAAGAGCAAGATTCAAGATAAAGAAGGTATTCCACCTGACCAA 585691 Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAAT 156002 ||||||||||| | || |||||||| || |||||| |||||| |||| ||||| || Sbjct 585690 CAAAGATTGATCTTCGCAGGTAAGCAACTAGAAGATGGAAGAACTCTATCCGATTACAAC 585631 Query 156003 AT 156004 || Sbjct 585630 AT 585629 Score = 107 bits (118), Expect = 3e-18 Identities = 133/182 (73%), Gaps = 0/182 (0%) Strand=Plus/Minus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 ||||| || || | || || || ||||| ||||| || || | || || || ||| Sbjct 586038 ATGCAGATCTTCGTCAAGACTTTAACTGGTAAAACCATCACCCTGGAGGTTGAGTCCTCT 585979 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 |||| |||| || || || | || || |||||||||||||| || || || || ||| Sbjct 585978 GATACTATTGACAATGTCAAGAGCAAGATTCAAGATAAAGAAGGTATTCCACCTGACCAA 585919 Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAAT 156002 ||||||||||| | || |||||||| || |||||| |||||| |||| ||||| || Sbjct 585918 CAAAGATTGATCTTCGCAGGTAAGCAACTAGAAGATGGAAGAACTCTATCCGATTACAAC 585859 Query 156003 AT 156004 || Sbjct 585858 AT 585857 >seq2 Length=1385486 Score = 107 bits (118), Expect = 3e-18 Identities = 154/215 (72%), Gaps = 4/215 (2%) Strand=Plus/Minus Query 155838 AAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCTGATAATATTTTAAAC 155897 || || |||||||| || || || || || ||||| ||| |||||| | |||| || Sbjct 975620 AAGACTTTGACTGGTAAGACCATCACTTTGGAAGTTGAATCTTCTGACACTATTGACAAT 975561 Query 155898 GTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAACAAAGATTGATTTAT 155957 || || || || ||||| || ||||| || || || || |||||||||||||| | | Sbjct 975560 GTCAAGTCAAAGATTCAAGACAAGGAAGGTATCCCACCTGACCAACAAAGATTGATCTTT 975501 Query 155958 GCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAATATATCCAAA--GAGG 156015 || |||||||| | ||||| |||||||| || || || | | ||||||| || Sbjct 975500 GCTGGTAAGCAATTGGAAGACGGTAGAACTTTGTCCGACTACA--ACATCCAAAAGGAAT 975443 Query 156016 CGACGCTTCATTTAGTGTTAAGATTAAGAGGCGGT 156050 | || || || || || ||||||| ||||| ||| Sbjct 975442 CCACTCTACACTTGGTTCTAAGATTGAGAGGTGGT 975408 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 731871487689600