Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Torulaspora_20microellipsoides_20[genbank_20GCA_5F900186055.1_202017 -06-15] 46 sequences; 10,414,811 total letters Query= NC_001611.1 Length=185578 Score E Sequences producing significant alignments: (Bits) Value seq27 473 1e-128 seq41 228 1e-54 seq29 91.5 2e-13 >seq27 Length=921605 Score = 473 bits (524), Expect = 1e-128 Identities = 1499/2304 (65%), Gaps = 67/2304 (3%) Strand=Plus/Plus Query 52798 CTTGTCCAATGTGAATTGAATGGGAGCGGATGCGGGTTTCGTACGTAGATAGTACATTCC 52857 ||| || | |||||||||||| | || || || | || || | || || ||||| || Sbjct 394099 CTTATCAATTGTGAATTGAATAGCTGCAGAAGCTGCTTGTGTTCTCAGGTAATACATACC 394158 Query 52858 CGTTTTTAGACCGAGACTCCATCCGTAAAAATGCATACTTGTTAGTTTGGAATAACTCGG 52917 ||||| | || | |||| |||||||| |||||||| || | || | ||| Sbjct 394159 TGTTTTCAATCCCATCTTCCAACCGTAAAAGTGCATACTGGTCAACTT---ACCCATCGT 394215 Query 52918 ATCTGCT---ATATGGATATTCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGC 52974 ||| ||||| ||||||| || ||| ||||||||| || || | | ||| || Sbjct 394216 TGGTGCACGGATATGAATATTCAAGGAGTGAGATTGATCGATAAAAGCAGCACGGTCAGC 394275 Query 52975 AGCCATTTTTATGATCGTCTTTTGTGGAATTTCCCAAATAGTTTTATAAA-CTCGCTTAA 53033 ||||||| ||||| ||||||| |||||||| | ||| || || | ||| | || Sbjct 394276 TGCCATTTCAATGATATGTTTTTGTGAGATTTCCCACACAGTCTTGTATAGCTCTTTCAA 394335 Query 53034 TATCTTCTGGAAGGTTTGT---ATTCTGAATAGATCCACCATCTACCATAATCCTATTCT 53090 | || | |||| ||| | ||| |||||||| ||| ||| || || | | Sbjct 394336 T-TCCTGAGGAATGTTAGGTAGATTTTGAATAGAACCATTGTCTGTGATGATGTGTTGTT 394394 Query 53091 TGATCTCATCATTCCATAATTTTCTC---TCGGTTAAAACTCTAAGGAGATGCGGATTAA 53147 | || ||||| ||||| | | | || ||| | | | | || |||||||| Sbjct 394395 TCATACTATCATCCCATA---TCCCCAAATCAACCAAATCACGTAACAAATACGGATTAA 394451 Query 53148 CTACTTGAAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCCA 53207 | | ||||||||| |||||||| || | || | || || || ||| | || || | Sbjct 394452 CGATTTGAAATTCACCAGACAAAACACGACGGGAATACATGTTCGAGGTGAATGGCTCGA 394511 Query 53208 CAGACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATA 53267 | | ||||||| ||| |||||||||| ||||||||||| ||||| ||||||| | || Sbjct 394512 AACATTCATTATATCCTAAAATTTGAGATGTTGATGCAGTTGGCATTGGTGCCAAGAGTA 394571 Query 53268 AACTATTTCTAAGACCGTATGTTC--TGATTTTATCTTTTAGAGGTTCCCAATTCCAAAG 53325 | ||| || | ||| |||||| | ||||| | ||| | || ||||||| ||| || Sbjct 394572 GAGAATTCCTGATACC--ATGTTCCTTAATTTTCTGTTTCAAAGTGTCCCAATCCCAGAG 394629 Query 53326 ATCCGACGGTACAACNNNNNNNNNNNNNNNTTGTAGAATACCGTTA----CTGGCGTACG 53381 || | || ||| | || ||| | | |||| | || Sbjct 394630 GTCGGTTGGCTTTGTATTCCACATATCATATTGCAAAACACCTTGAGAAACTGGAGAAC- 394688 Query 53382 ATCCTACATATGTATCGTATGGTCCTTCCTTCTCAGCTAGTTCACAACTCGCCTCTAATG 53441 || |||| || || ||||| || || || | ||| | |||||| | || |||| Sbjct 394689 ---CTTCATAGGTTTCATATGGACCATCTTTTTGAGCCAATTCACAGGATGATTCCAATG 394745 Query 53442 CACCGTAATAAATGGTTTCGAAGATCTTCTTATTTA-GATCTTGTGCTTCCAGGCTATCA 53500 | ||| |||||||||||| ||||| | |||| | | ||||| || || | || Sbjct 394746 CGGCGTGATAAATGGTTTCAAAGATTTGAATATTCAAGTTCTTG-GCCTCTTGAGACTCG 394804 Query 53501 AATGGATAATTTAAGAGAATAAACGCGTCTGCTAATCCTTGAACACCAATACCGATAGGT 53560 |||||| | ||| | || || | || || || || | |||||| | | |||||||| Sbjct 394805 AATGGAACACGTAACATCATGAATGTATCAGCCAAACCATTAACACCTAGAGCGATAGGT 394864 Query 53561 CTATGTCTCTTATTAGAGATTTCAGCTTCTGGAATAGGATAATAATTAATATCTATAATT 53620 || || ||| | |||||| ||| |||||| || |||||||| ||| || || | | Sbjct 394865 CTGTGCCTCATGTTAGAGTTTTTAGCTTCAATAACTGGATAATAGTTACGGTCAATGACT 394924 Query 53621 TTATTGAGGTTTCTGACAATTACTTTGACCACATCCTTCAGTTTGAGAAAATCAAA---T 53677 || || | || | ||| || || | | || | || | ||| | | | | Sbjct 394925 TTGTTTAAATTACGAGTAATAACCTTAGCAATTTCGTGTAGCCTAGCAAAGTTATACCAT 394984 Query 53678 TGT------CCATCTA-------TTACAAACATGTT--CAATGCAATAGATGCCAGATTA 53722 || |||||| || | ||| | | ||| ||||| || || |||||| Sbjct 394985 TGGGTCTTACCATCTTCCGCTGTTTGAATACAGGATGGCAACGCAATGGAAGCTAGATTA 395044 Query 53723 CAAACGGCTACCTCATTAGCATCCGCATATTGTATTATCTCAGTGCAAAGATTACTACAC 53782 ||||| || ||||| | | | | |||| || || ||| || | ||| | | Sbjct 395045 CAAACAGCAGTCTCATCTGGAGCAGAGTATTCTACAATTTCACAACATAAGTTAGAAGAT 395104 Query 53783 TTGATGGTTCCTAAATTTTGTTGATTACTCTTTTTGTTACACGCATCCTTATAAAGAATG 53842 ||||| || |||||||| | || |||||||| ||||||| ||||||||||| || ||| Sbjct 395105 TTGATAGTACCTAAATTCTTCTGGTTACTCTTCGTGTTACAAGCATCCTTATATAGCATG 395164 Query 53843 AATGGCGTACCAGTTTCAATCTGGGATTCTATAATCGCTTTCCAGACGACACGAGCCTTT 53902 ||||| |||||||||||| | || | || | || || | ||| | | || || Sbjct 395165 AATGGGGTACCAGTTTCAGTTTGAGCCTCCAAGATGGCGTACCACAATTTCTGGGCTTTA 395224 Query 53903 ATTATAGATTTGTATCTCTTTTCTCTTT--CGTATAGT--GTATACAATCGTTCAAACTC 53958 || | ||| || | | |||| |||| || ||||| | || ||| ||||| Sbjct 395225 ATGGTT--TTTCTACCGCGACCCTCTGCAACGTAACGTTCGTATA-ACTC-TTCGAACTC 395280 Query 53959 GTCTCCCCAAACATTGTCCAATCCAGGACATTCATCCGGACACATCAACGACCACTCTCC 54018 || | |||||| | || || || |||| ||| | | ||| | |||||| || Sbjct 395281 TTCGGCATAAACATCAGCTAAACCTGGCGCTTCACTTGGAGAAAACAAGGTCCACTCACC 395340 Query 54019 GTCATCCTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCT 54078 || || | || |||||||| || | ||||||||||||||| ||| ||||| |||||| Sbjct 395341 GTTTTCTTGGACACGTTTCATGAATAAATCAGGAATCCAAAGTGCTGGAAATAAATCTCT 395400 Query 54079 GGTTCTATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGA 54138 || | | ||| || || || ||| ||| ||| ||| | ||| | | ||| || | Sbjct 395401 GGCACGAATTTCTTCCTTACCGTGATTTTTTCTAATATCAATGAAATCGAAAATGTCTGC 395460 Query 54139 ATGCCACGGTTCCAAGTATATGGTCATAACTCCAGGCCGTTTGTTTCCTCCCTGATCTAT 54198 |||||| ||||| | ||||| | | | | || || | |||||| || || || || | Sbjct 395461 ATGCCATGGTTCAAGGTATAAAGCAAAAGCGCCTGGTCTTTTGTTACCACCTTGGTCGAC 395520 Query 54199 GTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCATTGGATGCACCATT 54258 || | ||| || || ||| | |||| | ||| || || | ||| || || | |||||| Sbjct 395521 ATAACGAGCAGTATTGTTAAAGACTCGAATCATGGGGATTAAACCGTTAGAGGTACCATT 395580 Query 54259 GGTCCCGGAGATATAGCTTCCACTGGCACGAATATTACTAATTGATAGACCTATCCCCCC 54318 || || | || ||| || | | |||||| ||| || ||| || || || || Sbjct 395581 AGTACCTGCAATGTAGGAACCGGTAGAACGAATGTTATGGATATGTAGCCCAATACCACC 395640 Query 54319 TGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGATGCCCTCTATACTATC 54378 || |||| || || | || ||| || || |||||||| || || || ||| ||| Sbjct 395641 AGCAGTTTTGGAAATCATAGCACATTCCTTCAAGGTATCATAAATTCCTTCAATAGAATC 395700 Query 54379 ATCCATCATGTTAAGTAGAAAACAGCTAGACATTTGGTGACGACTAGTTCCCGCATTAAA 54438 ||| |||| | || ||||| ||||||||| | || ||| || || || || Sbjct 395701 GTCCTTCATAGCTACTAAGAAACATGAAGACATTTGTGGGTGAGGAGTACCAGCGTTGAA 395760 Query 54439 TAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAGATTGTACGTCTCGATAGC 54498 ||| || ||||| || || | || | || ||| | | ||||| || || ||| | Sbjct 395761 TAAAGTTGGAGATGCATGGATGAAATACCTTAGAGACATCAAGTTGTAAGTTTCTATAAC 395820 Query 54499 TGAGTCTATATCCCATTGATGAATTCCTACTGCGACACGCATTAACATGTGCTGAGGTCT 54558 || | ||||| ||| || || |||| || | ||| | | || ||||| | Sbjct 395821 GGACTTGATATCTGTACCATGGATACCAACTGATACTCTCATGATTAAATGTTGAGGACG 395880 Query 54559 TTCAACGATCTTGTTGTTTATTTTCAGCAAGTAGGATTTTTCCAAAGTTTTAAAACCAAA 54618 |||| | | || || | |||||| || || |||||| || ||||| ||||| Sbjct 395881 TTCAGCAACCTCACCATTCGTCCTCAGCAGATAAGAACGTTCCAATGTCTTAAATCCAAA 395940 Query 54619 ATAGTTGTATGAAAAGTCTCGTTCGTAAATAATAACTGAGTTGAGTTTATCCTTATATTT 54678 |||||| || ||| || | || || | ||| | ||||| | || ||||| | || Sbjct 395941 GTAGTTGAATTGAAAATCCCTATCATAGACTATAGCAGAGTTTAATTCGTCCTTGTTTTC 396000 Query 54679 GTTAACTACATCCATGGTAATACTT--GAAATAATCGGAGAATGTTTCCCATTTTTAGGA 54736 |||| | ||| | | | ||| ||||| || ||||| ||| ||||||||| ||| Sbjct 396001 CATAACGATATCGTAG--ACTTCTTGAGAAATCATAGGAGAGTGTACCCCATTTTTTGGA 396058 Query 54737 TTGACATAGTTAAATAAATCCTTCATCACTTCACTAAATAGtttttttGTTTCTTTGTGT 54796 || |||||| | ||||||| | || |||| |||||||| |||||| ||| ||| Sbjct 396059 TTCACATAGGAATATAAATCAGTAATAACTTGCGAGAATAGTTTCGTTGTTTGTTTATGT 396118 Query 54797 AGATTTGATACGGCTATTCTAGCGGCTAGAATGGCATAATCCGGATGTTGTGTAGTACAA 54856 ||||| || | ||| |||||||| |||||| |||||||||| ||||| || || || Sbjct 396119 AGATTCGAAATGGCAATTCTAGCAGCTAGAGTGGCATAATCAGGATGCACCGTTGT-CAT 396177 Query 54857 GT-GGCTGCTATTTCGGCTGTCAGAGTGTCCAATTCTACCGTTGTTACTCCATTATATAT 54915 || ||| | |||| || | | | |||| ||||| || || || || || | ||| | Sbjct 396178 GTAGGCACATGTTTCAGCAGCTAAATTGTCTAATTCAACAGTAGTGACACCTTCATAGAC 396237 Query 54916 TCCTTGGAT--AACCTTCATAGCTATTTTAATAGGATCTATATGATCAGTGTTTAAGCCA 54973 ||| || || || || ||| || | || ||| |||||| | | || || ||| Sbjct 396238 ACCTGAAATTATACGTT--GAGTTATCTTGACAGCATCAATATGAGCTGGGTCCAACCCA 396295 Query 54974 TAACATAATTTTCTAATACGAGATGTGATTTTATCAAACATGACATTTTCCTTGTATCCA 55033 |||||||| | ||||| | ||||||||| ||||| | || ||| || | || Sbjct 396296 TAACATAAACGTGAGATACGGGCTGTGATTTTGTCAAATCTAACGGGTTCTTTATGACCG 396355 Query 55034 TTTCGTTTAATGACAAACATTTTT 55057 || |||| ||| ||||| ||| Sbjct 396356 CCTCTTTTATAGACGAACATATTT 396379 >seq41 Length=1599359 Score = 228 bits (252), Expect = 1e-54 Identities = 582/870 (67%), Gaps = 22/870 (3%) Strand=Plus/Plus Query 23865 TTTTCGAAAAAATTAGTTTTACCTTCTAATGATATATTTTCCATGAAATCGGATGGATTG 23924 || ||||| || ||||| ||||| | ||||| || |||||||||||||| ||||||| Sbjct 1218690 TTCTCGAAGAAGTTAGTCTTACCAGCCAATGAAATGTTTTCCATGAAATCAAATGGATTT 1218749 Query 23925 GTAACATTATAGATTCTTTTAAATCCCAATTCAGA--AATCAATCTATCTGCGACAAACT 23982 ||||| || | || ||||| | || | || ||| | |||||| |||||||| | Sbjct 1218750 GTAACGTTGAA-ATACTTTTTGTTACCTAAAGCGACTAAT-AGTCTATCAGCGACAAATT 1218807 Query 23983 CCATATATGTTTTCATCATTTCACAATTCATTCCTA-TAAGTTTAACTGGAAGAGCCACA 24041 | | ||| ||||| | || |||||| || | ||| || |||| | ||| | Sbjct 1218808 CAACGTATTGGTTCATTAGATCGGCATTCATACCCAATAACGATA-CTGGCAAAGCATCC 1218866 Query 24042 GTAAGAAATTCTTGTTCAATAGAGACCGCGTCTGTTATAATAGATCTTACTGTTTCTTCA 24101 | | | || || |||||| || || || || ||||| | || | || | Sbjct 1218867 ATGAAATATCTTTTTTCAATTTCAACAGCTTCGGTGATAATCTTTTCTA-TAATTGATGG 1218925 Query 24102 CTC-GGTGGATACAATAAATGTTTAAACATCAAACATGCGAAATCGCAGTGTAGACCCTC 24160 || ||| || ||||| || | |||||| || ||||| |||| ||| || Sbjct 1218926 TTCTGGTTTATTTTTCAAATGAGCGAATAACAAACAAGCAAAATCTGTATGTAAACCTTC 1218985 Query 24161 GTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAG 24220 ||||| | ||| || || || ||||| || | || ||||||| || ||| || | Sbjct 1218986 ATCTCTGCAAATCAACTCATTTGAAAAGGTCAAACCAGGCATTAAACCCTTCTTCTTTAA 1219045 Query 24221 CCAAAATATGGACGCAAATGATCCAGAAAAGAAAATTCCTTCTACTGCCGCAAAGGCAAT 24280 |||||| || | ||||| || ||||| |||||||| ||||| | ||| ||||| |||| Sbjct 1219046 CCAAAAGATAGCAGCAAAGGAACCAGAGAAGAAAATACCTTCAATTGCAGCAAATGCAAC 1219105 Query 24281 AAGTCTTTCTCCATAACCGGC---GCTGTCATGTATCCACTTTTGAGCCCAATCGGCCTT 24337 | |||||| | || || ||| || || ||||| | ||||| || || || Sbjct 1219106 TAATCTTTCAGCGAAAATTGCATTGCTATCTTGAATCCATCTAATTGCCCATTCTGCTTT 1219165 Query 24338 CTTTTTTACACAAGGCATTGTCTCTATAGCATTAAAGAGATAGtttttttCATTACTATC 24397 | ||| | || || | || |||||||| || | | | |||| || || Sbjct 1219166 TTCTTTAATTTGTGGAATATTATCGATAGCATTGAACAAGAAATCACTTTCCTTTGGGTC 1219225 Query 24398 TTTAACATATGTATCAATCA--AAAGACTATACATTTCCGAATGAATGTTTTCAATGGCC 24455 ||| | ||| ||||| |||| ||||| || | || |||||||| ||||| || Sbjct 1219226 TTTGATATAAGTATCGATCAGTAAAGAGTAAG--TCTCAGAATGAATATTTTCCATCATA 1219283 Query 24456 ATTTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGTACTTCTAT--ACAAAATCGTT 24513 |||||||| || || ||||| | || || | ||| || |||||| | ||| || | Sbjct 1219284 ATTTGAAACCCATAAAAACACTTGGCTTCAGGAATTTGAACTTCTGCTGAGAAATTC--T 1219341 Query 24514 CTGCTAAATTTTCATTCACTATTCCGTCACTGGCTGCAAAAAACGCCAATACATGTTTTA 24573 || | ||||||||||| || || || ||| || || ||||| ||||| || | | Sbjct 1219342 CTACCAAATTTTCATTAACGATACCATCAGAAGCGGCGAAAAATGCCAAGACCCTTGAAA 1219401 Query 24574 TAAAATATTTTTCGT-CTGGTG--TTAGTTTATTCCAATCATTGATATCTTTAGATATAT 24630 | ||| || |||| | || || || ||||||||||||| ||||| || || | || Sbjct 1219402 TGAAAAATCTTTCATTCTCGTTCATTCTATTATTCCAATCATGTATATCCTTTGAAAGAT 1219461 Query 24631 CCACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATACATATTCCAGATGTCAT 24690 | | |||||| | |||||||| || || ||||| | || || | ||| || |||| Sbjct 1219462 CGATTTCTTCAGCAGTCCAAAAAGAAGCTTCTGCTCTCTTGTAAGCTTGCCAAATTTCAT 1219521 Query 24691 GATATTGAATTGGAAAAATAACAAATCTAT 24720 |||||| |||||||| | ||||||||||| Sbjct 1219522 GATATTTGATTGGAAATAAAACAAATCTAT 1219551 >seq29 Length=1538644 Score = 91.5 bits (100), Expect = 2e-13 Identities = 213/319 (67%), Gaps = 2/319 (1%) Strand=Plus/Minus Query 53977 CAATCCAGGACATTCATCCGGACACATCAACGACCACTCTCCGTCATCCTTCACTCGTTT 54036 ||| |||||| |||||| || | | || ||||| || | | | ||| ||| | Sbjct 479133 CAAGCCAGGAGCTTCATCTGGGCTAAATAAAGACCAGTCCTCATTGGATTGCACACGTCT 479074 Query 54037 CATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATGTTCCTCGTT 54096 ||| || || ||||||||||| | || | ||| | |||||| | ||| |||| || || Sbjct 479073 CATGAAAAGGTCAGGAATCCACAACGCAAAAAACAAATCTCTAGCTCTCAGTTCTTCTTT 479014 Query 54097 TCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTA 54156 || ||| ||| || | || || | | ||| || || ||||| || || | || Sbjct 479013 ACCATGATTTTTTCGGAGTTGCAGAAAATCGAAAATGTCGGAGTGCCATGGCTCTAGATA 478954 Query 54157 TATGGTCATAA-CTCCAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTAT 54215 || |||| | ||||| |||||||| || || ||||| | |||||||| || || | Sbjct 478953 GAT-ACAATAAGCGCCAGGACGTTTGTTACCGCCTTGATCAACATATCTAGCAGTATTGT 478895 Query 54216 TATAAACTCTCAACATTGGAATAATACCATTGGATGCACCATTGGTCCCGGAGATATAGC 54275 || | || | | |||||| | | |||| |||| ||||||| || |||| | | Sbjct 478894 TAAATACACGTAGCATTGGCACTAAACCACTGGAAATTCCATTGGATCCTGAGACAAAAG 478835 Query 54276 TTCCACTGGCACGAATATT 54294 ||||| || | |||||| Sbjct 478834 CACCACTAGCCCTAATATT 478816 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 593721258610080