Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Torulaspora_20microellipsoides_20[genbank_20GCA_5F900186055.1_202017 -06-15] 46 sequences; 10,414,811 total letters Query= NC_003389.1 Length=146454 Score E Sequences producing significant alignments: (Bits) Value seq27 342 5e-89 seq41 214 2e-50 seq29 91.5 1e-13 >seq27 Length=921605 Score = 342 bits (378), Expect = 5e-89 Identities = 1212/1881 (64%), Gaps = 41/1881 (2%) Strand=Plus/Plus Query 36790 TCAACTGTGAATTTTATAGGATTTGATGCCGATTTTGTTCTCATATAATACATTCCAGTT 36849 |||| |||||||| |||| || || | || |||||||| |||||||| || ||| Sbjct 394103 TCAATTGTGAATTGAATAGCTGCAGAAGCTGCTTGTGTTCTCAGGTAATACATACCTGTT 394162 Query 36850 TTTAGCCCCAATCTCCATCCGTAAAAATGCATACTGGTCAGTTTTGCGTATGTAGGATTA 36909 || | |||| |||| |||||||| ||||||||||||| || | || || | Sbjct 394163 TTCAATCCCATCTTCCAACCGTAAAAGTGCATACTGGTCAACTTACCCATCGTTGGTGCA 394222 Query 36910 TCTATATATATTGTCATTGATTGACTTTGATCTATAAACGCACCTCTGTCGGCTGCCATT 36969 |||| || ||| || ||| |||||| ||||| ||| | | ||| ||||||||| Sbjct 394223 CGGATATGAATATTCAAGGAGTGAGATTGATCGATAAAAGCAGCACGGTCAGCTGCCATT 394282 Query 36970 TCTAAAATACATTTTTGAGATATCTCCCAAACCGTTTTATATATTTGTTTTATATTATCT 37029 || | ||| |||||| || || ||||| || || || |||| | ||| | ||| || Sbjct 394283 TCAATGATATGTTTTTGTGAGATTTCCCACACAGTCTTGTATAGCTCTTTCA-ATTC-CT 394340 Query 37030 GGTAAATCTAA-----ATGTTGAATAGAACCATTATGTAACACAATTGTATTCTTT-ATG 37083 | ||| | | || ||||||||||||||| | | | || || || ||| || Sbjct 394341 GAGGAATGTTAGGTAGATTTTGAATAGAACCATTGTCTGTGATGAT-GTGTTGTTTCATA 394399 Query 37084 TCATTATTCCACATATTTCTACTT--ATTAGTTCTCTCAATAGGTGTGGATTTACAACCT 37141 || || ||| ||| | | | | | || | || | | ||||| || | | Sbjct 394400 CTATCATCCCA--TATCCCCAAATCAACCAAATCACGTAACAAATACGGATTAACGATTT 394457 Query 37142 GAAAATCTCCAGATAATACTCTTCTTGTATATATATTGCTAGTATATGGTTCAATGGACT 37201 |||| || ||||| || || | | | ||| || || || |||| || | | | Sbjct 394458 GAAATTCACCAGACAAAACACGACGGGAATACATGTTCGAGGTGAATGGCTCGAAACATT 394517 Query 37202 CATTATTACTTAATATTTGAGATGTAGATGCAGTAGGCATTGGTGCTATTAGAAGGCTAT 37261 |||||| | ||| ||||||||||| |||||||| ||||||||||| | || || || Sbjct 394518 CATTATATCCTAAAATTTGAGATGTTGATGCAGTTGGCATTGGTGCCAAGAGTAGAGAAT 394577 Query 37262 TTCTCAATCCATGTGTATTAATTCTCTTTTTTAGTTCATTCCAATCCCATAAATCTGTTG 37321 | || | |||||| |||||| ||| ||| | | ||||||||| | || |||| Sbjct 394578 TCCTGATACCATGTTCCTTAATTTTCTGTTTCAAAGTGTCCCAATCCCAGAGGTCGGTTG 394637 Query 37322 GGTTCTTTAACCACATATCATATTGTAGAATACCTTTACTCGCTGGAGAATCGTTATATG 37381 | || | ||||||||||||||| | || ||||| | |||||||| | | ||| | Sbjct 394638 GCTTTGTATTCCACATATCATATTGCAAAACACCTTGAGAAACTGGAGAACCTTCATAGG 394697 Query 37382 TCTCATAAGGTCCGTAAATTTTAGCTAGTTCGCAACTAGATTCTAGTGCGGCATAATATA 37441 | ||||| || || | ||| ||| | ||| || ||||| | |||||| | ||| | Sbjct 394698 TTTCATATGGACCATCTTTTTGAGCCAATTCACAGGATGATTCCAATGCGGCGTGATAAA 394757 Query 37442 TTGTTTCGAAAATTTGTATATTTAATATTTTTGCTTCTTCGCTATCGAATGCATAGCCCA 37501 | ||||| || ||||| ||||| || | || || |||| ||||||| | | | Sbjct 394758 TGGTTTCAAAGATTTGAATATTCAAGTTCTTGGCCTCTTGAGACTCGAATGGAACACGTA 394817 Query 37502 ATAATATAAACACATCAGCCAAACCCTGAACACCGATACCTATGGGTCTATGTTTCTTAT 37561 | | || || |||||||||||| | |||||| | | | || ||||| || || | | Sbjct 394818 ACATCATGAATGTATCAGCCAAACCATTAACACCTAGAGCGATAGGTCTGTGCCTCATGT 394877 Query 37562 TAGATCTAGACGATTCTATCACTGGATAATAATTGATATCTATTATTTTATTTAGATTTT 37621 |||| | | ||| || ||||||||||| || || || | ||| |||| ||| Sbjct 394878 TAGAGTTTTTAGCTTCAATAACTGGATAATAGTTACGGTCAATGACTTTGTTTAAATTAC 394937 Query 37622 ------TAAC--TAGTATTTTCGT------------AATTATTCTCAACTTGTCGAACAT 37661 |||| ||| | |||||| | |||| | || ||| || Sbjct 394938 GAGTAATAACCTTAGCAATTTCGTGTAGCCTAGCAAAGTTATAC-CATTGGGTCTTACCA 394996 Query 37662 AAATACGTTATTATTAACAAATTTACTCAACGAAATAGATCCTAGATTACATACAGCAAC 37721 | || | || | || | | ||||| ||| || |||||||||| |||||| Sbjct 394997 TCTTCCGCTGTT-TGAATACAGGATGGCAACGCAATGGAAGCTAGATTACAAACAGCAGT 395055 Query 37722 TTCATCTTCGTTACTAAATTGTATAATCTCTGTACAGAGATTACTCGATCTAATTGTTCC 37781 |||||| | ||| || ||| || ||| | ||| ||| | || || || Sbjct 395056 CTCATCTGGAGCAGAGTATTCTACAATTTCACAACATAAGTTAGAAGATTTGATAGTACC 395115 Query 37782 CAAATTGCTTTGATTGGATTTTTTATTACAAGAATCTTTATATAGTATATACGGCGTTCC 37841 ||||| | || || || | ||||||| ||| |||||||| || | || || || Sbjct 395116 TAAATTCTTCTGGTTACTCTTCGTGTTACAAGCATCCTTATATAGCATGAATGGGGTACC 395175 Query 37842 TTGTTCTATTTGAGCCTCGATAATAGATTTCCATAAACTTCTTG-CTTTAACGATCGCTT 37900 ||| |||||||||| | || | | ||| || |||| | |||||| | | | Sbjct 395176 AGTTTCAGTTTGAGCCTCCAAGATGGCGTACCACAAT-TTCTGGGCTTTAATGGTTTTTC 395234 Query 37901 TAAtttttttCTTTGTTTCGTATTCTATATATAATTTGTTAAAATCATTCCCCCATACAT 37960 || || || |||| | ||||| | | || || | | | |||| Sbjct 395235 TACCGCGACCCTCTGCAACGTAACGTTCGTATAACTCTTCGAACTCTTCGGCATAAACAT 395294 Query 37961 CGCATAATCCTGGACATTCGCATGGACACATTAGAGACCATTCTTCATCTTTTTCTACGC 38020 | ||| ||||| ||| | |||| | | | | ||| || | | || || || | Sbjct 395295 CAGCTAAACCTGGCGCTTCACTTGGAGAAAACAAGGTCCACTCACCGTTTTCTTGGACAC 395354 Query 38021 GTTCCATAAATAAATCAGGTACCCATAATGCAGTAAATAAATCTTTGGTTCTATATTCTT 38080 ||| ||| ||||||||||| | ||| | ||| | |||||||||| ||| | | ||||| Sbjct 395355 GTTTCATGAATAAATCAGGAATCCAAAGTGCTGGAAATAAATCTCTGGCACGAATTTCTT 395414 Query 38081 CGTTCCCTACATTCTTTCTTAAGCTTAGAAAATCGAATATATCAGCGTGCCATGGTTCTA 38140 | || || ||| ||||| | | |||||||| || || || ||||||||||| | Sbjct 395415 CCTTACCGTGATTTTTTCTAATATCAATGAAATCGAAAATGTCTGCATGCCATGGTTCAA 395474 Query 38141 --TATAAATCGACATTGCTCCTGGTCTTTTATCACCTCCCTGATTAATATATCTAACTGT 38198 |||||| | | | || ||||||||||| | ||| || || | | ||| | | | || Sbjct 395475 GGTATAAAGCAAAA--GCGCCTGGTCTTTTGTTACCACCTTGGTCGACATAACGAGCAGT 395532 Query 38199 GTTATTATATATTCTTAACATAGGTACTATACCATTAGATTTGCCGTTTATACCGGATAT 38258 || ||| | | || | ||| || | || ||| ||||| | || || |||| | || Sbjct 395533 ATTGTTAAAGACTCGAATCATGGGGATTAAACCGTTAGAGGTACCATTAGTACCTGCAAT 395592 Query 38259 ATAAGTACCCTTAGCTCGTATATTACTTATCGACAATCCTATTCCACCTGCATGTTTTGA 38318 || | ||| ||| || || ||| || | || || ||||| ||| ||| || Sbjct 395593 GTAGGAACCGGTAGAACGAATGTTATGGATATGTAGCCCAATACCACCAGCAGTTTTGGA 395652 Query 38319 TATTAAAGCGCATTGTTTTAACGTATCAAATATACCTTCTATACTGTCATCCTTTATTGG 38378 || | ||| |||| || || |||||| | || ||||| ||| || ||||| || | Sbjct 395653 AATCATAGCACATTCCTTCAAGGTATCATAAATTCCTTCAATAGAATCGTCCTTCATAGC 395712 Query 38379 TAGTATAAAACAACTAGACATTTGAGGCAATGGAGTTCCGGCGTTAAATAATGTAGGAGA 38438 || || ||||| ||||||||| || ||||| || ||||| ||||| || ||||| Sbjct 395713 TACTAAGAAACATGAAGACATTTGTGGGTGAGGAGTACCAGCGTTGAATAAAGTTGGAGA 395772 Query 38439 TGCATGTATGAACCATTTTTCCGACAAATAATTATATGTTTCTATTACATCATCTATATC 38498 |||||| ||||| | || |||| | || || |||||||| || | ||||| Sbjct 395773 TGCATGGATGAAATACCTTAGAGACATCAAGTTGTAAGTTTCTATAACGGACTTGATATC 395832 Query 38499 ACCGCCGTGAATACCTAGAGATACCCTCATTAGCATATGTTGTGGTCTTTCTATTATTTT 38558 || || ||||| | ||||| ||||| | | |||||| || | ||| | | Sbjct 395833 TGTACCATGGATACCAACTGATACTCTCATGATTAAATGTTGAGGACGTTCAGCAACCTC 395892 Query 38559 ATTATTCTGTTTAAGTAGATACGATTTTTCTAATGTTTTTATTCCAAAATAACTATATGA 38618 | |||| | || ||||| || ||| ||||| || | |||||| || | || Sbjct 395893 ACCATTCGTCCTCAGCAGATAAGAACGTTCCAATGTCTTAAATCCAAAGTAGTTGAATTG 395952 Query 38619 ATAATCTCTATCGTATGCTAT 38639 | |||| ||||| || |||| Sbjct 395953 AAAATCCCTATCATAGACTAT 395973 >seq41 Length=1599359 Score = 214 bits (236), Expect = 2e-50 Identities = 594/894 (66%), Gaps = 28/894 (3%) Strand=Plus/Plus Query 11338 CTTTTGATATTCACTAACTCGTCGT-TCGAAAAAATTAGTCTTACCTTCTAGTGATATAT 11396 ||| ||||| || ||||| || | ||||| || ||||||||||| | | ||| || | Sbjct 1218668 CTTCTGATAATCGGAAACTC-TCTTCTCGAAGAAGTTAGTCTTACCAGCCAATGAAATGT 1218726 Query 11397 ACTCCATAAAGCTAAAAGGATTATATACATTGAAG-ACTTTTTCACAACCTAACTCTGTT 11455 ||||| || ||| ||||| || ||||| ||||||| | ||||| | | Sbjct 1218727 TTTCCATGAAATCAAATGGATTTGTAACGTTGAAATACTTTTTGTTA-CCTAAAGCGACT 1218785 Query 11456 AATAATCTATCTGCGACGAATTCTATATACTGAGACATTAAACAACAATTCATACCTA-T 11514 |||| |||||| ||||| ||||| | || || ||||| | ||||||||| | | Sbjct 1218786 AATAGTCTATCAGCGACAAATTCAACGTATTGGTTCATTAGATCGGCATTCATACCCAAT 1218845 Query 11515 AA-GATCCACCGGAATAGCAACTGTCAAAAACTCCTTTTCTATATTAACCGCATCAATGA 11573 || ||| || || | |||| | | ||| | ||||| || | ||| || || ||| Sbjct 1218846 AACGAT--ACTGGCAAAGCATCCATGAAATATCTTTTTTCAATTTCAACAGCTTCGGTGA 1218903 Query 11574 TTATCGACGTTATAACT--TCCTTAGATGGTGGATGTAATAAATGTTTAAACATTAAACA 11631 | ||| ||||| | | || |||| || | ||||| || | ||||| Sbjct 1218904 TAATCTTTTCTATAATTGATGGTTC--TGGTTTATTTTTCAAATGAGCGAATAACAAACA 1218961 Query 11632 CGCAAAATCACAATGTAAACCTTCGTCTCTACTTATTAGTTCATTAGAAAATGTTAATCC 11691 |||||||| |||||||||||| ||||| | || | ||||| ||||| || || || Sbjct 1218962 AGCAAAATCTGTATGTAAACCTTCATCTCTGCAAATCAACTCATTTGAAAAGGTCAAACC 1219021 Query 11692 GGGCATCAATCCTCGtttttttATCCAAAATATAGCAGCAAATGAACCAGAAAAGAATAT 11751 ||||| || || || |||| |||||| ||||||||||| |||||||| ||||| || Sbjct 1219022 AGGCATTAAACCCTTCTTCTTTAACCAAAAGATAGCAGCAAAGGAACCAGAGAAGAAAAT 1219081 Query 11752 TCCCTCCACAGCTGCAAATGCTACTACTCTTTCTCCATATACCTTG--TTGCTAGAT--- 11806 || || | || |||||||| |||| |||||| | | | ||| |||||| | Sbjct 1219082 ACCTTCAATTGCAGCAAATGCAACTAATCTTTCAGCGAAAA--TTGCATTGCTATCTTGA 1219139 Query 11807 ATCCATTTTCTGGCCCAATCAGCTTTCTTTTTTACGCATTCCATTGTTTCTATAGCGTTA 11866 |||||| | | ||||| || ||||| | ||| | | || | || ||||| || Sbjct 1219140 ATCCATCTAATTGCCCATTCTGCTTTTTCTTTAATTTGTGGAATATTATCGATAGCATTG 1219199 Query 11867 AATA--AATGCATTTTTTCTATATTATCTCTTACATATGTATCTATTAATAAACTATACA 11924 || | || || |||| | ||| | | ||| ||||| || | |||| || Sbjct 1219200 AACAAGAAATCA--CTTTCCTTTGGGTCTTTGATATAAGTATCGATCAGTAAAGAGTAAG 1219257 Query 11925 TTTCTGAATGAATATTTTCCATAGCTATTTGAAATCCATAGAAACATCGTGCCTCTGAAC 11984 | || ||||||||||||||||| |||||||| ||||| ||||| || || | | Sbjct 1219258 TCTCAGAATGAATATTTTCCATCATAATTTGAAACCCATAAAAACACTTGGCTTCAGGAA 1219317 Query 11985 ACTGTACATCCACATAAAATCTTTCCGCTAAATTCTCATTTACAATACCATCACTAGATG 12044 || || || | | || | || | ||||| ||||| || ||||||||| || | Sbjct 1219318 TTTGAACTTCTGCTGAGAAATTCTCTACCAAATTTTCATTAACGATACCATCAGAAGCGG 1219377 Query 12045 CAAAAAATGCTAGTATATGTTTTATAAAGTATTTTTCGTCTTTAGTTAAT----TTATCC 12100 | |||||||| | | | || || || |||| | | | ||| || |||| | Sbjct 1219378 CGAAAAATGCCAAGACCCTTGAAATGAAAAATCTTTCAT-TCTCGTTCATTCTATTATTC 1219436 Query 12101 CAATCATCTAAATCTTTTGATAAATCTACTTCTTCAACGGTCCAAAAACTTGCCACTGAT 12160 ||||||| || ||| ||||| | ||| | ||||||| | ||||||||| || ||| | Sbjct 1219437 CAATCATGTATATCCTTTGAAAGATCGATTTCTTCAGCAGTCCAAAAAGAAGCTTCTGCT 1219496 Query 12161 TGTTTATACATTTTCCAGATATCATGATACTTAATAGGGAAAATAACGAACCTA 12214 || || || ||| || |||||||| || || || || | ||| || ||| Sbjct 1219497 CTCTTGTAAGCTTGCCAAATTTCATGATATTTGATTGGAAATAAAACAAATCTA 1219550 >seq29 Length=1538644 Score = 91.5 bits (100), Expect = 1e-13 Identities = 311/478 (65%), Gaps = 10/478 (2%) Strand=Plus/Minus Query 37992 TAGAGACCATTCTTCATCTTTTTCTACGCGTTCCATAAATAAATCAGGTACCCATAATGC 38051 || |||||| || |||| || || ||| ||| || | ||||| | ||| || || Sbjct 479106 TAAAGACCAGTCCTCATTGGATTGCACACGTCTCATGAAAAGGTCAGGAATCCACAACGC 479047 Query 38052 AGTAAATAAATCTTTGGTTCTATATTCTTCGTTCCCTACATTCTTTCTTAAGCTTAGAAA 38111 | ||| |||||| | | ||| |||||| || || ||| |||| | ||||| Sbjct 479046 AAAAAACAAATCTCTAGCTCTCAGTTCTTCTTTACCATGATTTTTTCGGAGTTGCAGAAA 478987 Query 38112 ATCGAATATATCAGCGTGCCATGGTTCTATATAAATCGACATT--GCTCCTGGTCTTTTA 38169 |||||| || || | ||||||||| |||| ||| || ||| | || || || | ||| Sbjct 478986 ATCGAAAATGTCGGAGTGCCATGGCTCTAGATAGAT--ACAATAAGCGCCAGGACGTTTG 478929 Query 38170 TCACCTCCCTGATTAATATATCTAACTGTGTTATTATATATTCTTAACATAGGTACTATA 38229 | ||| || |||| || ||||||| | || || ||| ||| | || ||| || |||| | Sbjct 478928 TTACCGCCTTGATCAACATATCTAGCAGTATTGTTAAATACACGTAGCATTGGCACTAAA 478869 Query 38230 CCATTAGATTTGCCGTTTATACCGGATATATAAGTACCCTTAGCTCGTATATT--ACTTA 38287 ||| | || | || || || || | | ||| ||| |||| | ||||| | | Sbjct 478868 CCACTGGAAATTCCATTGGATCCTGAGACAAAAGCACCACTAGCCCTAATATTCGAGACA 478809 Query 38288 TCGACAATCCTATTCCACCTGCATGTTTTGATATTAAAGCGCATTGTTTTAA-CGTATCA 38346 | | | ||||| ||||||| || ||||| ||||| | || | | || || | | Sbjct 478808 TGG--ATCCCTATCCCACCTGACGCCTTCGATATCAAAGC-CGTTTTATGAAGTGTTTTA 478752 Query 38347 AATATACCTTCTATACTGTCATCCTTTATTGGTAGTATAAAACAACTAGACATTTGAGGC 38406 || || || || || || ||| | || ||| | || || || | | | Sbjct 478751 AAAATGCCATCGATGGAATCCTCCATCATCCCTAGAAGGAAGCACGATGATAAATACTGG 478692 Query 38407 AATGGAGTTCCGGCGTTAAATAATGTAGGAGATGCATGTATGAACCATTTTTCCGACA 38464 | || |||||||| || | || ||||| ||||||||||| |||||| ||||| Sbjct 478691 TTTACTGTACCGGCGTTGAACAGAGTGGGAGAAGCATGTATGAAATATTTTTTCGACA 478634 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 468524530598240