Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Torulaspora_20microellipsoides_20[genbank_20GCA_5F900186055.1_202017 -06-15] 46 sequences; 10,414,811 total letters Query= NC_004117.1 Length=158482 Score E Sequences producing significant alignments: (Bits) Value seq43 96.9 4e-15 seq41 95.1 1e-14 seq15 91.5 1e-13 seq19 89.7 5e-13 >seq43 Length=816610 Score = 96.9 bits (106), Expect = 4e-15 Identities = 158/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 142958 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 143017 || || || || | ||| || || || | ||| ||||||||||| || || || || | Sbjct 812608 CCACCACGCAATCTCAAGACCAAGTGCAGTGTGGATTCTTTTTGAATATTATAGTCAGAC 812667 Query 143018 ATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 143077 | || || || || |||||||||||||| | |||| | ||||| || || || Sbjct 812668 AGAGTTCTGCCATCCTCCAGTTGTTTACCAGCGAAAATCAATCTCTGCTGGTCTGGTGGA 812727 Query 143078 ATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACT 143137 || || || ||||| |||||| ||| | | || | ||||||| || ||| || Sbjct 812728 ATACCCTCCTTGTCCTGAATTTTAGATTTGACATTGTCAATGGTGTCCGAGGATTCCACC 812787 Query 143138 TCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCATA 143185 || | || | ||||| || ||||| ||||| || |||||||||||| Sbjct 812788 TCCAACGTAATAGTCTTACCTGTCAACGTTTTGACAAATATTTGCATA 812835 Score = 95.1 bits (104), Expect = 1e-14 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 142958 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 143017 || || || || | ||| || || || | ||| ||||||||||| || || || || | Sbjct 812836 CCACCACGCAATCTCAAGACCAAGTGCAGTGTGGATTCTTTTTGAATATTATAGTCAGAC 812895 Query 143018 ATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 143077 | || || || || |||||||||||||| | |||| | ||||| || || || Sbjct 812896 AGAGTTCTGCCATCCTCCAGTTGTTTACCAGCGAAAATCAATCTCTGCTGGTCTGGTGGA 812955 Query 143078 ATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACT 143137 || || || ||||| |||||| ||| | | || | ||||||| || ||| || Sbjct 812956 ATACCCTCCTTGTCCTGAATTTTAGATTTGACATTGTCAATGGTGTCCGAGGATTCCACC 813015 Query 143138 TCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCAT 143184 || | || | ||||| || ||||| ||||| ||||| |||||||| Sbjct 813016 TCCAACGTAATAGTCTTACCTGTCAACGTTTTAACGAAGATTTGCAT 813062 Score = 91.5 bits (100), Expect = 1e-13 Identities = 157/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 142958 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 143017 || || || || | ||| || || || | ||| ||||||||||| || || || || | Sbjct 809416 CCACCACGCAATCTCAAGACCAAGTGCAATGTGGATTCTTTTTGAATATTATAGTCAGAC 809475 Query 143018 ATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 143077 | || || || || |||||||||||||| | |||| | ||||| || || || Sbjct 809476 AGAGTTCTGCCATCCTCCAGTTGTTTACCAGCGAAAATCAATCTCTGCTGGTCTGGGGGA 809535 Query 143078 ATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACT 143137 || || || ||||| |||||| ||| | | || ||||||| || ||| || Sbjct 809536 ATACCCTCCTTGTCCTGAATTTTAGATTTGACATTGTCAGTGGTGTCCGAGGATTCCACC 809595 Query 143138 TCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCATA 143185 || | || | ||||| || ||||| ||||| || |||||||||||| Sbjct 809596 TCCAACGTAATAGTCTTCCCTGTCAACGTTTTGACAAATATTTGCATA 809643 Score = 82.4 bits (90), Expect = 8e-11 Identities = 146/213 (69%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 142973 AAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTCATTGTGCTCGAGTCT 143032 || || || || | ||| ||||||||||| || || || || || || || || Sbjct 809203 AAGACCAAGTGCAGTGTGGATTCTTTTTGAATATTATAGTCAGACAGAGTTCTGCCATCC 809262 Query 143033 TCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCG 143092 || |||||||||||||| | |||| | ||||| || || || || || || ||||| Sbjct 809263 TCCAGTTGTTTACCAGCGAAAATCAATCTCTGCTGGTCTGGTGGAATACCCTCCTTGTCT 809322 Query 143093 GTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACTTCAACAGTCACCGTC 143152 |||||| ||| | | || | ||||| | || ||| || || | || | ||| Sbjct 809323 TGAATTTTAGATTTGACGTTATCAATGGTGTCAGAGGATTCCACCTCCAGGGTGATAGTC 809382 Query 143153 TTGCCGGTCAATGTTTTTACGAATATTTGCATA 143185 || || ||||| ||||| || || ||||||||| Sbjct 809383 TTACCTGTCAAAGTTTTGACAAAGATTTGCATA 809415 Score = 82.4 bits (90), Expect = 8e-11 Identities = 155/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 142958 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 143017 || || || || | ||| || | || | ||| ||||||||||| || || | || | Sbjct 812380 CCACCACGCAATCTCAAGACCACGTGCAGTGTGGATTCTTTTTGAATATTAGAGTCAGAC 812439 Query 143018 ATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 143077 | || | || || |||||||||||||| | |||| | ||||| || || || Sbjct 812440 AGAGTTATGCCATCCTCCAGTTGTTTACCAGCGAAAATCAATCTCTGCTGGTCTGGTGGA 812499 Query 143078 ATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACT 143137 || || || ||||| |||||| ||| | | || | ||||||| || ||| || Sbjct 812500 ATACCCTCCTTGTCCTGAATTTTAGATTTGACATTGTCAATGGTGTCCGAGGATTCCACC 812559 Query 143138 TCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCATA 143185 || | || | ||||| || ||||| ||||| || |||||||||||| Sbjct 812560 TCCAACGTAATAGTCTTACCTGTCAACGTTTTGACAAATATTTGCATA 812607 >seq41 Length=1599359 Score = 95.1 bits (104), Expect = 1e-14 Identities = 272/417 (65%), Gaps = 11/417 (3%) Strand=Plus/Minus Query 50327 TCAACGCTTTCGATAATATTTCGTGTGTGCGTAAAAAGGACGATTGGGCATTGAAATGGA 50386 |||| ||| ||||||||||| | | |||| | || |||||| | | ||||| Sbjct 1219200 TCAATGCTATCGATAATATTCCACAAATTAAAGAAAAAGCAGAATGGGCAATTAGATGGA 1219141 Query 50387 CTaaaaacaaaaaaCTTACTTTGGCCGAACGTTTAGTGGCGTTTGCCATAGTTGAAGGTG 50446 | || | | || | ||| || ||| | ||||| || ||||| | |||||||| Sbjct 1219140 TTCAAGATAGCAATGCAATTTTCGCTGAAAGATTAGTTGCATTTGCTGCAATTGAAGGTA 1219081 Query 50447 TGtttttttCCGGTAGCTTTGCAGCCATATTTTACATTAAAACCTTAGGCATAATGCCCG 50506 | || || || ||| |||||| || || |||| | || | || ||||||| | Sbjct 1219080 TTTTCTTCTCTGGTTCCTTTGCTGCTATCTTTTGGTTAAAGAAGAAGGGTTTAATGCCTG 1219021 Query 50507 GCCTCACGTTTAGCAACGAGTTGATTTCGCGCGACGAAGGAATGCACACAGACTTTGCGT 50566 | | || ||| || |||||||||| | || ||||| | || ||||| ||||| | Sbjct 1219020 GTTTGACCTTTTCAAATGAGTTGATTTGCAGAGATGAAGGTTTACATACAGATTTTGCTT 1218961 Query 50567 GTTTGTACTACAATACGCGCGTAAATGAAAAAT-TATCATACGAAACAATTTTGG---AC 50622 |||||| || ||| | |||||||| | || | | ||||| | | | Sbjct 1218960 GTTTGT-------TATTCGCTCATTTGAAAAATAAACCAGAACCATCAATTATAGAAAAG 1218908 Query 50623 ATGTTCAAAGAAGCCGTCGACATCGAAAAAGAGTTTTTCACGGACGCTTTACCCGTGGCA 50682 || ||| ||||| || || || |||||| | ||||| ||| ||||| || || | Sbjct 1218907 ATTATCACCGAAGCTGTTGAAATTGAAAAAAGATATTTCATGGATGCTTTGCCAGTATCG 1218848 Query 50683 TTGTTGGGCATGAACGCAGACATGATGTGCGAGTACATTGAGTTTGTTGCAGACAGA 50739 || ||||| ||||| || || | ||| | | ||| |||| ||||| || || ||| Sbjct 1218847 TTATTGGGTATGAATGCCGATCTAATGAACCAATACGTTGAATTTGTCGCTGATAGA 1218791 >seq15 Length=954869 Score = 91.5 bits (100), Expect = 1e-13 Identities = 151/218 (69%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 142958 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 143017 || |||| || | ||| || || || | |||||||||||||| |||||||| || | Sbjct 83957 CCACCTCTCAATCTCAAGACCAAGTGTAAAGTAGATTCTTTTTGAATGTTGTAGTCAGAC 83898 Query 143018 ATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 143077 | || || ||||| | ||| ||||||||| |||| | | ||| || || || || Sbjct 83897 AAAGTTCTACCATCTTCCAATTGCTTACCAGCAAAGATTAATCTTTGTTGGTCAGGTGGG 83838 Query 143078 ATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACT 143137 || ||||||||||| ||| || || | | || | ||||| | | ||| ||| Sbjct 83837 ATACCTTCTTTGTCTTGAATCTTAGACTTGACATTGTCAATAGTGTCAGAAGATTCAACT 83778 Query 143138 TCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAA 143175 || | ||| | ||||| || ||||| ||||| ||||| Sbjct 83777 TCCAAAGTGATGGTCTTACCAGTCAAAGTTTTGACGAA 83740 >seq19 Length=616425 Score = 89.7 bits (98), Expect = 5e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 142958 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 143017 || |||| || | ||| ||||| || | |||||||| ||||| ||||||||||| Sbjct 593007 CCACCTCTCAATCTCAAGACTAAGTGCAAAGTAGATTCCTTTTGGATGTTGTAATCAGAT 593066 Query 143018 ATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 143077 | || || ||||| | |||||||||||| |||||| | ||| || || || || Sbjct 593067 AAGGTTCTACCATCTTCCAACTGTTTACCAGCAAAGATCAATCTTTGTTGGTCAGGTGGA 593126 Query 143078 ATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACT 143137 || ||||| ||||| || || || | | || | ||||| | | ||| ||| Sbjct 593127 ATACCTTCCTTGTCTTGGATCTTAGACTTGACATTATCAATAGTGTCAGAAGATTCAACT 593186 Query 143138 TCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCAT 143184 || | || | ||||| || ||||| ||||| || || |||||||| Sbjct 593187 TCTAAGGTAATGGTCTTACCAGTCAAAGTTTTGACAAAAATTTGCAT 593233 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 507014108466720