Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Torulaspora_20microellipsoides_20[genbank_20GCA_5F900186055.1_202017 -06-15] 46 sequences; 10,414,811 total letters Query= NC_008168.1 Length=104710 Score E Sequences producing significant alignments: (Bits) Value seq46 140 2e-28 seq15 122 6e-23 seq19 105 4e-18 seq43 95.1 8e-15 >seq46 Length=12037 Score = 140 bits (154), Expect = 2e-28 Identities = 88/95 (93%), Gaps = 5/95 (5%) Strand=Plus/Minus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 |||||||||||||||||||||||||||||||||||||||||||| || |||||||| Sbjct 3246 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGGACAGTGGGAATCTCGT 3187 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991 |||||| |||||||||||||||||||||||||||| Sbjct 3186 TAATCCATTCATGCGCGTCACTAATTAGATGACGA 3152 Score = 104 bits (114), Expect = 2e-17 Identities = 69/77 (90%), Gaps = 0/77 (0%) Strand=Plus/Minus Query 19947 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGC 20006 |||||| |||||||||||||||| |||||| |||| |||||||||||||||||||||| | Sbjct 1281 CTCTCTTTTCAAAGTTCTTTTCATCTTTCCATCACTGTACTTGTTCGCTATCGGTCTCTC 1222 Query 20007 GGTAATATTTAGCCTTA 20023 | |||||||||| ||| Sbjct 1221 GCCAATATTTAGCTTTA 1205 Score = 104 bits (114), Expect = 2e-17 Identities = 69/77 (90%), Gaps = 0/77 (0%) Strand=Plus/Minus Query 19947 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGC 20006 |||||| |||||||||||||||| |||||| |||| |||||||||||||||||||||| | Sbjct 10292 CTCTCTTTTCAAAGTTCTTTTCATCTTTCCATCACTGTACTTGTTCGCTATCGGTCTCTC 10233 Query 20007 GGTAATATTTAGCCTTA 20023 | |||||||||| ||| Sbjct 10232 GCCAATATTTAGCTTTA 10216 >seq15 Length=954869 Score = 122 bits (134), Expect = 6e-23 Identities = 159/220 (72%), Gaps = 0/220 (0%) Strand=Plus/Minus Query 38089 TACCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAG 38148 ||||||||||||| | ||| ||||| || | ||| || |||||||| ||||| |||| Sbjct 83959 TACCACCTCTCAATCTCAAGACCAAGTGTAAAGTAGATTCTTTTTGAATGTTGTAGTCAG 83900 Query 38149 ACAAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGG 38208 ||||| | | || || ||||| || || ||||| |||| | |||||| || | | Sbjct 83899 ACAAAGTTCTACCATCTTCCAATTGCTTACCAGCAAAGATTAATCTTTGTTGGTCAGGTG 83840 Query 38209 GGACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAA 38268 ||| ||||||||||| ||| || ||| ||||| | | ||| || | ||||| Sbjct 83839 GGATACCTTCTTTGTCTTGAATCTTAGACTTGACATTGTCAATAGTGTCAGAAGATTCAA 83780 Query 38269 CTTCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAA 38308 |||| || || || || ||||| ||||| ||||| ||||| Sbjct 83779 CTTCCAAAGTGATGGTCTTACCAGTCAAAGTTTTGACGAA 83740 >seq19 Length=616425 Score = 105 bits (116), Expect = 4e-18 Identities = 162/231 (70%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 38090 ACCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGA 38149 |||||||||||| | ||| || || || | ||| |||||||| || ||||||||||| Sbjct 593006 ACCACCTCTCAATCTCAAGACTAAGTGCAAAGTAGATTCCTTTTGGATGTTGTAATCAGA 593065 Query 38150 CAAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGG 38209 || | | || || || ||||| || ||||| || | | |||||| || | || Sbjct 593066 TAAGGTTCTACCATCTTCCAACTGTTTACCAGCAAAGATCAATCTTTGTTGGTCAGGTGG 593125 Query 38210 GACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAAC 38269 | ||||| ||||| || || ||| ||||| | | ||| || | |||||| Sbjct 593126 AATACCTTCCTTGTCTTGGATCTTAGACTTGACATTATCAATAGTGTCAGAAGATTCAAC 593185 Query 38270 TTCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCATGTT 38320 |||||| ||||| || ||||| ||||| ||||| || || || ||||| || Sbjct 593186 TTCTAAGGTAATGGTCTTACCAGTCAAAGTTTTGACAAAAATTTGCATCTT 593236 >seq43 Length=816610 Score = 95.1 bits (104), Expect = 8e-15 Identities = 162/235 (69%), Gaps = 0/235 (0%) Strand=Plus/Plus Query 38089 TACCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAG 38148 ||||||| | ||| | ||| ||||| || || ||| || ||||||||||| || |||| Sbjct 812834 TACCACCACGCAATCTCAAGACCAAGTGCAGTGTGGATTCTTTTTGAATATTATAGTCAG 812893 Query 38149 ACAAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGG 38208 ||| | | | || || | |||||| || || || || | | || || || | | Sbjct 812894 ACAGAGTTCTGCCATCCTCCAGTTGTTTACCAGCGAAAATCAATCTCTGCTGGTCTGGTG 812953 Query 38209 GGACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAA 38268 | | || || |||||| |||||| || ||||| | | || || ||| | Sbjct 812954 GAATACCCTCCTTGTCCTGAATTTTAGATTTGACATTGTCAATGGTGTCCGAGGATTCCA 813013 Query 38269 CTTCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCATGTTTTA 38323 | || || |||||||| ||||| ||||| ||||| ||||| || ||||||||||| Sbjct 813014 CCTCCAACGTAATAGTCTTACCTGTCAACGTTTTAACGAAGATTTGCATGTTTTA 813068 Score = 84.2 bits (92), Expect = 1e-11 Identities = 156/229 (68%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 38089 TACCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAG 38148 ||||||| | ||| | ||| ||||| || || ||| || ||||||||||| || |||| Sbjct 812606 TACCACCACGCAATCTCAAGACCAAGTGCAGTGTGGATTCTTTTTGAATATTATAGTCAG 812665 Query 38149 ACAAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGG 38208 ||| | | | || || | |||||| || || || || | | || || || | | Sbjct 812666 ACAGAGTTCTGCCATCCTCCAGTTGTTTACCAGCGAAAATCAATCTCTGCTGGTCTGGTG 812725 Query 38209 GGACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAA 38268 | | || || |||||| |||||| || ||||| | | || || ||| | Sbjct 812726 GAATACCCTCCTTGTCCTGAATTTTAGATTTGACATTGTCAATGGTGTCCGAGGATTCCA 812785 Query 38269 CTTCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCAT 38317 | || || |||||||| ||||| ||||| ||||| || ||||| ||||| Sbjct 812786 CCTCCAACGTAATAGTCTTACCTGTCAACGTTTTGACAAATATTTGCAT 812834 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 334947012220226