Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Torulaspora_20microellipsoides_20[genbank_20GCA_5F900186055.1_202017
-06-15] 46 sequences; 10,414,811 total letters
Query= NC_015960.1
Length=175699
Score E
Sequences producing significant alignments: (Bits) Value
seq41 374 1e-98
seq27 374 1e-98
seq29 158 1e-33
>seq41
Length=1599359
Score = 374 bits (414), Expect = 1e-98
Identities = 631/902 (70%), Gaps = 21/902 (2%)
Strand=Plus/Plus
Query 18670 TTTTGATATTCGGCAACTCTTTTTTCAAAGAAATTAGTTTTTCCCTCTAATGATATACAT 18729
|| ||||| |||| |||||| || || ||||| ||||| || || | ||||| || |
Sbjct 1218669 TTCTGATAATCGGAAACTCTCTTCTCGAAGAAGTTAGTCTTACCAGCCAATGAAATGTTT 1218728
Query 18730 TCCATAAAATCAAATGGATTTTTTACATT-ATATAtttttttGAATCCTAATTCTAATAG 18788
||||| ||||||||||||||| | || || | ||| ||||| | ||||| | | ||
Sbjct 1218729 TCCATGAAATCAAATGGATTTGTAACGTTGAAATACTTTTTGTTA-CCTAAAGCGACTAA 1218787
Query 18789 TAGTCTATCCGCTACAAATTTAATATATGTGTTCATCATATCACAATTCATTCCTATTAA 18848
||||||||| || ||||||| || ||| |||||| | ||| |||||| || | |||
Sbjct 1218788 TAGTCTATCAGCGACAAATTCAACGTATTGGTTCATTAGATCGGCATTCATACCCAATAA 1218847
Query 18849 TTTAACAGGTAGTGCATCTGTAAGAAATTCTTGTTCTATATTTACTGCCTCTGATATAAT 18908
|| || | ||||| | | | || || ||| || | || || || | |||||
Sbjct 1218848 CGATACTGGCAAAGCATCCATGAAATATCTTTTTTCAATTTCAACAGCTTCGGTGATAAT 1218907
Query 18909 AGATACAACTCTATC-TTCATTAGGAGGGTATAGA----AGATGTTTAAACATCAAACAT 18963
| ||||| || || ||| || | ||| || | ||||||
Sbjct 1218908 CTTT-----TCTATAATTGATGGTTCTGGTTTATTTTTCAAATGAGCGAATAACAAACAA 1218962
Query 18964 GCAAAATCACAATGTAGTCCCTCGTCTCTACTTATCAATTCATTAGAAAATGTTAAACCA 19023
|||||||| ||||| || || ||||| | ||||| ||||| ||||| || ||||||
Sbjct 1218963 GCAAAATCTGTATGTAAACCTTCATCTCTGCAAATCAACTCATTTGAAAAGGTCAAACCA 1219022
Query 19024 GGCATCAGTCCTCttttttttAACCAGAATATAGAAGCAAATGATCCAGAAAAGAATATA 19083
||||| | || | || |||||||| || |||| |||||| || ||||| ||||| |||
Sbjct 1219023 GGCATTAAACCCTTCTTCTTTAACCAAAAGATAGCAGCAAAGGAACCAGAGAAGAAAATA 1219082
Query 19084 CCTTCTACTGCTGCAAAAGCAACTAGTCTTTCTCCATAACTAGCATCATTATTATGAATC 19143
||||| | ||| ||||| ||||||| |||||| | || | |||| ||| ||||||
Sbjct 1219083 CCTTCAATTGCAGCAAATGCAACTAATCTTTCAGCGAAAATTGCATTGCTATCTTGAATC 1219142
Query 19144 CATTTCAGTGCCCAATCAGCCTTCTTTTTTACACATGGCATTGTCTCTATAGAATTAAAT 19203
||| | | |||||| || || || | ||| | ||| || | || |||| ||| ||
Sbjct 1219143 CATCTAATTGCCCATTCTGCTTTTTCTTTAATTTGTGGAATATTATCGATAGCATTGAAC 1219202
Query 19204 AGATACAT-ACGCTCATCTGTATCTTTAACATATGCATCTATCAATAAACTGTACATTTC 19262
| | | || || || | || ||||| | ||| | ||| |||| |||| ||| | ||
Sbjct 1219203 A-AGAAATCACTTTCCTTTGGGTCTTTGATATAAGTATCGATCAGTAAAGAGTAAGTCTC 1219261
Query 19263 TGAATGAATATTTTCTATAGCCATCTGAAATCCGTAAAAACATCTTGCTTCTGTTATCTG 19322
|||||||||||||| || || ||||| || |||||||| | ||||| | || ||
Sbjct 1219262 AGAATGAATATTTTCCATCATAATTTGAAACCCATAAAAACACTTGGCTTCAGGAATTTG 1219321
Query 19323 TACTTC-ACTACAAAATCTTTCGACCAAATTTTCATTAACTATTCCATCACTAGCTGCAA 19381
||||| || |||| | || ||||||||||||||||| || |||||| ||| || |
Sbjct 1219322 AACTTCTGCTGAGAAAT-TCTCTACCAAATTTTCATTAACGATACCATCAGAAGCGGCGA 1219380
Query 19382 AAAATGCTAATACATGTTTAATAAAATGTTTTTCATCTGAGGTTAAT----GTATTCCAA 19437
||||||| || || | ||| ||| | |||||| | ||| || ||||||||
Sbjct 1219381 AAAATGCCAAGACCCTTGAAATGAAAAATCTTTCAT-TCTCGTTCATTCTATTATTCCAA 1219439
Query 19438 TCATTAATATCTTTAGATAAATCTACTTCTTCAACTGTCCAAAAAGAAGCCTCTGCTTTT 19497
|||| ||||| || || | ||| | ||||||| | |||||||||||||| |||||| |
Sbjct 1219440 TCATGTATATCCTTTGAAAGATCGATTTCTTCAGCAGTCCAAAAAGAAGCTTCTGCTCTC 1219499
Query 19498 TTATACATGTTCCATATATCACGATATTGTATAGGAAATATAACAAATCTATTTTTATTT 19557
|| || | ||| || ||| |||||| || ||||||| ||||||||||| ||| ||
Sbjct 1219500 TTGTAAGCTTGCCAAATTTCATGATATTTGATTGGAAATAAAACAAATCTATGTTTGTTC 1219559
Query 19558 TC 19559
||
Sbjct 1219560 TC 1219561
>seq27
Length=921605
Score = 374 bits (414), Expect = 1e-98
Identities = 1444/2273 (64%), Gaps = 92/2273 (4%)
Strand=Plus/Plus
Query 47004 GCTGATTTTGTTCGTAAATAATACATACCAGTCTTTAAACCTAAACTCCATCCATAGAAA 47063
|||| || ||||| | ||||||||||| || || || || | |||| || || ||
Sbjct 394130 GCTGCTTGTGTTCTCAGGTAATACATACCTGTTTTCAATCCCATCTTCCAACCGTAAAAG 394189
Query 47064 TGCATACTAGTTAATTTAGAATAACTAGGTTCTGAAATATGAATATTAAGAGATTGACTC 47123
|||||||| || || ||| | ||| | ||||||||||| | || |||
Sbjct 394190 TGCATACTGGTCAACTTACCCATCGTTGGTGCACGGATATGAATATTCAAGGAGTGAGAT 394249
Query 47124 TGATCAATAAATGCACCTCTATCAGCTGCCATATCTAAAATAACCCTTTGTGGTATCTCC 47183
||||| ||||| ||| | | ||||||||||| || | ||| |||||| || |||
Sbjct 394250 TGATCGATAAAAGCAGCACGGTCAGCTGCCATTTCAATGATATGTTTTTGTGAGATTTCC 394309
Query 47184 CATACTGTTTTATAAATTTGTTTAATGTCTTCTGGGAGATTAGT---ATTTTGAATAGAT 47240
|| || || || || | | ||| | || | || | |||| ||||||||||||
Sbjct 394310 CACACAGTCTTGTATAGCTCTTTCAATTCCTGAGGAATGTTAGGTAGATTTTGAATAGAA 394369
Query 47241 CCTCCgttttctataat--tttgttttttaattc---------atttgaccaaagttttc 47289
|| || ||| | || | |||| ||| || | || | ||||| ||
Sbjct 394370 CCA---TTGTCTGTGATGATGTGTTGTTTCATACTATCATCCCATATCCCCAAA----TC 394422
Query 47290 gttcagttaatgtttttaaAAGATGAGGATTAACAATTTGAAATTCTCCAGATAGTACTC 47349
|| | | || || | || |||||||| ||||||||||| ||||| | || |
Sbjct 394423 AACCAAATCACGT----AACAAATACGGATTAACGATTTGAAATTCACCAGACAAAACAC 394478
Query 47350 TACGGCTATATATATTACTTGTATATGGTTCTATAGATTCATTATTTCCAAAAATTTGAG 47409
|||| ||| || || || |||| || | | ||||||||| ||| ||||||||||
Sbjct 394479 GACGGGAATACATGTTCGAGGTGAATGGCTCGAAACATTCATTATATCCTAAAATTTGAG 394538
Query 47410 CAGTTGATGCTGTAGGCATGGATGCAACTAATAAGCTATTTCTTACTCCATATTTTTGTA 47469
|||||||| || ||||| | ||| | | || ||| || | |||| || | |
Sbjct 394539 ATGTTGATGCAGTTGGCATTGGTGCCAAGAGTAGAGAATTCCTGATACCATGTTCCTTAA 394598
Query 47470 TCTNNNNNNNNNNNNGTTTCCAATCCCAAAGATCTGATGGAACAACATTCCAAAAATCAT 47529
| | | ||||||||| || || | ||| |||||| | |||||
Sbjct 394599 TTTTCTGTTTCAAAGTGTCCCAATCCCAGAGGTCGGTTGGCTTTGTATTCCACATATCAT 394658
Query 47530 ATTGAAGAATTCCTTTACTTATCGGAGAACCATTATATGTTTTATAAGGACCGTATAGTT 47589
|||| | || |||| | | |||||||| | ||| |||| ||| ||||| | | ||
Sbjct 394659 ATTGCAAAACACCTTGAGAAACTGGAGAACCTTCATAGGTTTCATATGGACCATCTTTTT 394718
Query 47590 TAGCGAGTTCACAACTTGCTTCCAATGCACTATAATATATTGTTTCAAATATTTTTATGT 47649
||| | |||||| || ||||||||| | ||| || |||||||| |||| || |
Sbjct 394719 GAGCCAATTCACAGGATGATTCCAATGCGGCGTGATAAATGGTTTCAAAGATTTGAATAT 394778
Query 47650 TTAGATTCCTTGCTTCTGATGATTCAAAAGGATANNNNNNNNNNNNNAATGTATCTGCCA 47709
| | ||| | || ||| || || || ||| |||||||| ||||
Sbjct 394779 TCAAGTTCTTGGCCTCTTGAGACTCGAATGGAACACGTAACATCATGAATGTATCAGCCA 394838
Query 47710 ATCCTTGAACACCAATACCAATTGGTCTATGAGTTTTATTAGAAAACTCAGCTTCTGGTA 47769
| || | |||||| | | | || ||||| || | | ||||| | |||||| |
Sbjct 394839 AACCATTAACACCTAGAGCGATAGGTCTGTGCCTCATGTTAGAGTTTTTAGCTTCAATAA 394898
Query 47770 ATGGATATTTGTTTATATCTATAATTTTATTTAGANNNNNNNNNNNNNNNNNNACAATTT 47829
|||||| | ||| || || | ||| |||| | ||||||
Sbjct 394899 CTGGATAATAGTTACGGTCAATGACTTTGTTTAAATTACGAGTAATAACCTTAGCAATTT 394958
Query 47830 CTCTTAATTTATTAAAATCAAAC---TTGTTATTTATAACAAAC-CTATTA--------- 47876
| || || ||| | | || | | | || | | | || ||
Sbjct 394959 CGTGTAGCCTAGCAAAGTTATACCATTGGGTCTTACCATCTTCCGCTGTTTGAATACAGG 395018
Query 47877 -----AGTGCTATAGATGCTAGATTACATACAGCTACCTCATTTGGATTAGTATATTGTA 47931
| || || || ||||||||||| ||||| ||||| |||| || |||| ||
Sbjct 395019 ATGGCAACGCAATGGAAGCTAGATTACAAACAGCAGTCTCATCTGGAGCAGAGTATTCTA 395078
Query 47932 TTATTTCAGCACATAGATTACCACATTTGATAGTACCCAAATTTTGATGATTATTNNNNT 47991
|||||| ||||| ||| | ||||||||||||| ||||| | || ||| |
Sbjct 395079 CAATTTCACAACATAAGTTAGAAGATTTGATAGTACCTAAATTCTTCTGGTTACTCTTCG 395138
Query 47992 TGTTACATGCGTCCTTGTAAAGCATAAAAGGTGTTCCAGTTTCTATCTGAGATTCAATGA 48051
||||||| || ||||| || ||||| || || || |||||||| | |||| || | ||
Sbjct 395139 TGTTACAAGCATCCTTATATAGCATGAATGGGGTACCAGTTTCAGTTTGAGCCTCCAAGA 395198
Query 48052 TAGATTTCCAAACAGTCCTAGCCTTTA-TAACAGCTCTAGCTTTATTATCATGTTCGTAT 48110
| | | ||| | | | || | ||||| | |||| | | || ||||
Sbjct 395199 TGGCGTACCACA-ATTTCTGGGCTTTAATGGTTTTTCTACCGCGACCCTCTGCAACGTAA 395257
Query 48111 --TTAGTATATAACTTCTCAAATTCATCCCCATACACATTATCTAACCCAGGACATTCAT 48168
|| ||||| ||| || || || || |||| |||| | |||| || || ||||
Sbjct 395258 CGTTCGTATA--ACTCTTCGAACTCTTCGGCATAAACATCAGCTAAACCTGGCGCTTCAC 395315
Query 48169 TAGGACACATCAATGACCAATCCTCATCATTTTTT---ACTCTAGTCATAAATATATCTG 48225
| ||| | | ||| | ||| |||| | |||| | || | |||| |||| ||| |
Sbjct 395316 TTGGAGAAAACAAGGTCCA---CTCACCGTTTTCTTGGACACGTTTCATGAATAAATCAG 395372
Query 48226 GTATCCAAAGAGCTATAAATAAATCCCTAGTTCTTAGTTCTTCATTGCCACTATTCCTTT 48285
| |||||||| ||| ||||||||| || | | | |||||| || || ||| ||
Sbjct 395373 GAATCCAAAGTGCTGGAAATAAATCTCTGGCACGAATTTCTTCCTTACCGTGATTTTTTC 395432
Query 48286 TAAGTTCAAGAAAGTCCATTATATCAGCATGCCATGGTTCTAAATATATTGCCATTACAC 48345
||| |||| || || | || || |||||||||||||| | |||| || | | |
Sbjct 395433 TAATATCAATGAAATCGAAAATGTCTGCATGCCATGGTTCAAGGTATAAAGCAAAAGCGC 395492
Query 48346 CTGGTCGTTTATTACCTCCTTGATCTATATATCTGGCAGTATTGTTATAAACTCTTAACA 48405
|||||| ||| ||||| ||||| || | ||| | |||||||||||| | |||| | ||
Sbjct 395493 CTGGTCTTTTGTTACCACCTTGGTCGACATAACGAGCAGTATTGTTAAAGACTCGAATCA 395552
Query 48406 TTGGGACAATACCATTTGATATACCATTGGTTCCCGAAATATAACTTCCACTAGCTCTTA 48465
| |||| | ||| || || ||||||| || || | ||| || || ||| | |
Sbjct 395553 TGGGGATTAAACCGTTAGAGGTACCATTAGTACCTGCAATGTAGGAACCGGTAGAACGAA 395612
Query 48466 TATTACTAATTGAAATACCTATACCACCTGCCATTTTAGATATTAGAGCACACCGTTTAA 48525
| ||| || | || |||||||| || |||| || || | |||||| || |
Sbjct 395613 TGTTATGGATATGTAGCCCAATACCACCAGCAGTTTTGGAAATCATAGCACATTCCTTCA 395672
Query 48526 GGGTATCATAAATTCCTTCTATACTATCATCTATCATATTTAATAGAAAACAACTAGACA 48585
|||||||||||||||||| ||| ||| || ||||| || || ||||| |||||
Sbjct 395673 AGGTATCATAAATTCCTTCAATAGAATCGTCCTTCATAGCTACTAAGAAACATGAAGACA 395732
Query 48586 TTTGCGGATGACAAGTTCCTGAATTAAATAATGTTGGAGATGCATGAATAAACCATTTCT 48645
|||| || ||| ||| || | || ||||| |||||||||||||| || || | |
Sbjct 395733 TTTGTGGGTGAGGAGTACCAGCGTTGAATAAAGTTGGAGATGCATGGATGAAATACCTTA 395792
Query 48646 CTGATAACAATTTATATGTTTCAATAACAGAATCTATATCCCATTGATGTATACCTATAG 48705
|| | ||| || || ||||| ||||| || | ||||| ||| ||||| | |
Sbjct 395793 GAGACATCAAGTTGTAAGTTTCTATAACGGACTTGATATCTGTACCATGGATACCAACTG 395852
Query 48706 ATACACGCATTAACATATATTGAGGTCTTTCAACAATTTTGTTATTTATTTTCAAAAGAT 48765
|||| | ||| | | || |||||| | |||| ||| | ||| | ||| ||||
Sbjct 395853 ATACTCTCATGATTAAATGTTGAGGACGTTCAGCAACCTCACCATTCGTCCTCAGCAGAT 395912
Query 48766 ATGATTTTTCCAATGTTTTAAAACCAAAATAGTTGTATGAAAAGTCGTTATCATTAATAA 48825
| || ||||||||| ||||| ||||| |||||| || ||| || |||||| | |
Sbjct 395913 AAGAACGTTCCAATGTCTTAAATCCAAAGTAGTTGAATTGAAAATCCCTATCATAGACTA 395972
Query 48826 TTGATGAATTTATTCTTTCCTTATGTT-TATATACTACATCCATTACATTTTTTGATATA 48884
| | || |||| | ||||| | || ||| || | ||| || | || || ||
Sbjct 395973 TAGCAGAGTTTAATTCGTCCTTGTTTTCCATA-ACGATATCGTAGACTTCTTGAGAAATC 396031
Query 48885 ATTG-------------ATTCCTTG--------------TAAAGATCTTCTACAACATCA 48917
|| | ||| ||| || | ||| | ||| |
Sbjct 396032 ATAGGAGAGTGTACCCCATTTTTTGGATTCACATAGGAATATAAATCAGTAATAACTTGC 396091
Query 48918 CTAAATAttttttttGTTTCTTTATGAAGATTAGATATAGATATTCTAGCAGCTAATATA 48977
|||| ||| |||||| |||||| ||||| || || | ||||||||||||| |
Sbjct 396092 GAGAATAGTTTCGTTGTTTGTTTATGTAGATTCGAAATGGCAATTCTAGCAGCTAGAGTG 396151
Query 48978 GCATAATCTGGATGAATTGTTGTACATGTA-CTAGATATTTCTGCTGCTAATATATCTAA 49036
|||||||| ||||| | ||||| |||||| | || |||| || ||||| | |||||
Sbjct 396152 GCATAATCAGGATGCACCGTTGT-CATGTAGGCACATGTTTCAGCAGCTAAATTGTCTAA 396210
Query 49037 TTCTTTAGTAGTTACACCTGTATATATTCCTTGAAT--AACTTTCATTGCTATATTTACT 49094
||| |||||| |||||| ||| | ||| ||| || || | | ||| || ||
Sbjct 396211 TTCAACAGTAGTGACACCTTCATAGACACCTGAAATTATACGTTGA--GTTATCTTGACA 396268
Query 49095 GGATCTATATGATCCATATCCAGTCCATAACATAAtttttttATTCTAGATGTAATTTTA 49154
| ||| |||||| | |||| ||||||||||| | || | | ||| |||||
Sbjct 396269 GCATCAATATGAGCTGGGTCCAACCCATAACATAAACGTGAGATACGGGCTGTGATTTTG 396328
Query 49155 TCAAACATTATATTCTCTTTACGACCGTCACGTTTTATA-ACAAACATCTTTA 49206
||||| | | |||||| ||||| | | ||||||| || ||||| ||||
Sbjct 396329 TCAAATCTAACGGGTTCTTTATGACCGCCTC-TTTTATAGACGAACATATTTA 396380
>seq29
Length=1538644
Score = 158 bits (174), Expect = 1e-33
Identities = 310/453 (68%), Gaps = 14/453 (3%)
Strand=Plus/Minus
Query 48117 TATAACTTCTCAAATTCATCCCCATACACATTATCTAACCCAGGACATTCATTAGGACAC 48176
|||| || || ||||| || ||||| || | | || |||||| ||||| || |
Sbjct 479168 TATAGTTTGTCGAATTCTTCTCCATAGACTTCACTCAAGCCAGGAGCTTCATCTGGGCTA 479109
Query 48177 ATCAATGACCAATCCTCATCATTTTTTACTCTAGTCATAAATATATCTGGTATCCAAAGA 48236
| || ||||| ||||||| || || | |||| || | || || ||||| |
Sbjct 479108 AATAAAGACCAGTCCTCATTGGATTGCACACGTCTCATGAAAAGGTCAGGAATCCACAAC 479049
Query 48237 GCTATAAATAAATCCCTAGTTCTTAGTTCTTCATTGCCACTATTCCTTTTAAGTTCAAGA 48296
|| | ||| ||||| |||| ||| |||||||| || ||| ||| || |||| |||
Sbjct 479048 GCAAAAAACAAATCTCTAGCTCTCAGTTCTTCTTTACCATGATTTTTTCGGAGTTGCAGA 478989
Query 48297 AAGTCCATTATATCAGCATGCCATGGTTCTAAATATATTGCCATTA-CACCTGGTCGTTT 48355
|| || | || || | |||||||| |||| ||| || | || | | || || |||||
Sbjct 478988 AAATCGAAAATGTCGGAGTGCCATGGCTCTAGATAGATA-CAATAAGCGCCAGGACGTTT 478930
Query 48356 ATTACCTCCTTGATCTATATATCTGGCAGTATTGTTATAAACTCTTAACATTGGGACAAT 48415
||||| |||||||| | |||||| |||||||||||| | || | || |||||| || |
Sbjct 478929 GTTACCGCCTTGATCAACATATCTAGCAGTATTGTTAAATACACGTAGCATTGGCACTAA 478870
Query 48416 ACCATTTGATATACCATTGGTTCCCGAAATATAACTTCCACTAGCTCTTATATT--ACTA 48473
|||| | || || ||||||| ||| || | | || |||||||| || ||||| |
Sbjct 478869 ACCACTGGAAATTCCATTGGATCCTGAGACAAAAGCACCACTAGCCCTAATATTCGAGAC 478810
Query 48474 ATTGAAATACCTATACCACCTGCCATTTTAGATATTAGAGCACACCGTTT----AAGGGT 48529
|| | || ||||| ||||||| | || ||||| | || |||||| ||| ||
Sbjct 478809 ATGG--ATCCCTATCCCACCTGACGCCTTCGATATCAAAG----CCGTTTTATGAAGTGT 478756
Query 48530 ATCATAAATTCCTTCTATACTATCATCTATCAT 48562
| | |||| || || || ||| || |||||
Sbjct 478755 TTTAAAAATGCCATCGATGGAATCCTCCATCAT 478723
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 562108476787440
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