Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Torulaspora_20microellipsoides_20[genbank_20GCA_5F900186055.1_202017 -06-15] 46 sequences; 10,414,811 total letters Query= NC_015960.1 Length=175699 Score E Sequences producing significant alignments: (Bits) Value seq41 374 1e-98 seq27 374 1e-98 seq29 158 1e-33 >seq41 Length=1599359 Score = 374 bits (414), Expect = 1e-98 Identities = 631/902 (70%), Gaps = 21/902 (2%) Strand=Plus/Plus Query 18670 TTTTGATATTCGGCAACTCTTTTTTCAAAGAAATTAGTTTTTCCCTCTAATGATATACAT 18729 || ||||| |||| |||||| || || ||||| ||||| || || | ||||| || | Sbjct 1218669 TTCTGATAATCGGAAACTCTCTTCTCGAAGAAGTTAGTCTTACCAGCCAATGAAATGTTT 1218728 Query 18730 TCCATAAAATCAAATGGATTTTTTACATT-ATATAtttttttGAATCCTAATTCTAATAG 18788 ||||| ||||||||||||||| | || || | ||| ||||| | ||||| | | || Sbjct 1218729 TCCATGAAATCAAATGGATTTGTAACGTTGAAATACTTTTTGTTA-CCTAAAGCGACTAA 1218787 Query 18789 TAGTCTATCCGCTACAAATTTAATATATGTGTTCATCATATCACAATTCATTCCTATTAA 18848 ||||||||| || ||||||| || ||| |||||| | ||| |||||| || | ||| Sbjct 1218788 TAGTCTATCAGCGACAAATTCAACGTATTGGTTCATTAGATCGGCATTCATACCCAATAA 1218847 Query 18849 TTTAACAGGTAGTGCATCTGTAAGAAATTCTTGTTCTATATTTACTGCCTCTGATATAAT 18908 || || | ||||| | | | || || ||| || | || || || | ||||| Sbjct 1218848 CGATACTGGCAAAGCATCCATGAAATATCTTTTTTCAATTTCAACAGCTTCGGTGATAAT 1218907 Query 18909 AGATACAACTCTATC-TTCATTAGGAGGGTATAGA----AGATGTTTAAACATCAAACAT 18963 | ||||| || || ||| || | ||| || | |||||| Sbjct 1218908 CTTT-----TCTATAATTGATGGTTCTGGTTTATTTTTCAAATGAGCGAATAACAAACAA 1218962 Query 18964 GCAAAATCACAATGTAGTCCCTCGTCTCTACTTATCAATTCATTAGAAAATGTTAAACCA 19023 |||||||| ||||| || || ||||| | ||||| ||||| ||||| || |||||| Sbjct 1218963 GCAAAATCTGTATGTAAACCTTCATCTCTGCAAATCAACTCATTTGAAAAGGTCAAACCA 1219022 Query 19024 GGCATCAGTCCTCttttttttAACCAGAATATAGAAGCAAATGATCCAGAAAAGAATATA 19083 ||||| | || | || |||||||| || |||| |||||| || ||||| ||||| ||| Sbjct 1219023 GGCATTAAACCCTTCTTCTTTAACCAAAAGATAGCAGCAAAGGAACCAGAGAAGAAAATA 1219082 Query 19084 CCTTCTACTGCTGCAAAAGCAACTAGTCTTTCTCCATAACTAGCATCATTATTATGAATC 19143 ||||| | ||| ||||| ||||||| |||||| | || | |||| ||| |||||| Sbjct 1219083 CCTTCAATTGCAGCAAATGCAACTAATCTTTCAGCGAAAATTGCATTGCTATCTTGAATC 1219142 Query 19144 CATTTCAGTGCCCAATCAGCCTTCTTTTTTACACATGGCATTGTCTCTATAGAATTAAAT 19203 ||| | | |||||| || || || | ||| | ||| || | || |||| ||| || Sbjct 1219143 CATCTAATTGCCCATTCTGCTTTTTCTTTAATTTGTGGAATATTATCGATAGCATTGAAC 1219202 Query 19204 AGATACAT-ACGCTCATCTGTATCTTTAACATATGCATCTATCAATAAACTGTACATTTC 19262 | | | || || || | || ||||| | ||| | ||| |||| |||| ||| | || Sbjct 1219203 A-AGAAATCACTTTCCTTTGGGTCTTTGATATAAGTATCGATCAGTAAAGAGTAAGTCTC 1219261 Query 19263 TGAATGAATATTTTCTATAGCCATCTGAAATCCGTAAAAACATCTTGCTTCTGTTATCTG 19322 |||||||||||||| || || ||||| || |||||||| | ||||| | || || Sbjct 1219262 AGAATGAATATTTTCCATCATAATTTGAAACCCATAAAAACACTTGGCTTCAGGAATTTG 1219321 Query 19323 TACTTC-ACTACAAAATCTTTCGACCAAATTTTCATTAACTATTCCATCACTAGCTGCAA 19381 ||||| || |||| | || ||||||||||||||||| || |||||| ||| || | Sbjct 1219322 AACTTCTGCTGAGAAAT-TCTCTACCAAATTTTCATTAACGATACCATCAGAAGCGGCGA 1219380 Query 19382 AAAATGCTAATACATGTTTAATAAAATGTTTTTCATCTGAGGTTAAT----GTATTCCAA 19437 ||||||| || || | ||| ||| | |||||| | ||| || |||||||| Sbjct 1219381 AAAATGCCAAGACCCTTGAAATGAAAAATCTTTCAT-TCTCGTTCATTCTATTATTCCAA 1219439 Query 19438 TCATTAATATCTTTAGATAAATCTACTTCTTCAACTGTCCAAAAAGAAGCCTCTGCTTTT 19497 |||| ||||| || || | ||| | ||||||| | |||||||||||||| |||||| | Sbjct 1219440 TCATGTATATCCTTTGAAAGATCGATTTCTTCAGCAGTCCAAAAAGAAGCTTCTGCTCTC 1219499 Query 19498 TTATACATGTTCCATATATCACGATATTGTATAGGAAATATAACAAATCTATTTTTATTT 19557 || || | ||| || ||| |||||| || ||||||| ||||||||||| ||| || Sbjct 1219500 TTGTAAGCTTGCCAAATTTCATGATATTTGATTGGAAATAAAACAAATCTATGTTTGTTC 1219559 Query 19558 TC 19559 || Sbjct 1219560 TC 1219561 >seq27 Length=921605 Score = 374 bits (414), Expect = 1e-98 Identities = 1444/2273 (64%), Gaps = 92/2273 (4%) Strand=Plus/Plus Query 47004 GCTGATTTTGTTCGTAAATAATACATACCAGTCTTTAAACCTAAACTCCATCCATAGAAA 47063 |||| || ||||| | ||||||||||| || || || || | |||| || || || Sbjct 394130 GCTGCTTGTGTTCTCAGGTAATACATACCTGTTTTCAATCCCATCTTCCAACCGTAAAAG 394189 Query 47064 TGCATACTAGTTAATTTAGAATAACTAGGTTCTGAAATATGAATATTAAGAGATTGACTC 47123 |||||||| || || ||| | ||| | ||||||||||| | || ||| Sbjct 394190 TGCATACTGGTCAACTTACCCATCGTTGGTGCACGGATATGAATATTCAAGGAGTGAGAT 394249 Query 47124 TGATCAATAAATGCACCTCTATCAGCTGCCATATCTAAAATAACCCTTTGTGGTATCTCC 47183 ||||| ||||| ||| | | ||||||||||| || | ||| |||||| || ||| Sbjct 394250 TGATCGATAAAAGCAGCACGGTCAGCTGCCATTTCAATGATATGTTTTTGTGAGATTTCC 394309 Query 47184 CATACTGTTTTATAAATTTGTTTAATGTCTTCTGGGAGATTAGT---ATTTTGAATAGAT 47240 || || || || || | | ||| | || | || | |||| |||||||||||| Sbjct 394310 CACACAGTCTTGTATAGCTCTTTCAATTCCTGAGGAATGTTAGGTAGATTTTGAATAGAA 394369 Query 47241 CCTCCgttttctataat--tttgttttttaattc---------atttgaccaaagttttc 47289 || || ||| | || | |||| ||| || | || | ||||| || Sbjct 394370 CCA---TTGTCTGTGATGATGTGTTGTTTCATACTATCATCCCATATCCCCAAA----TC 394422 Query 47290 gttcagttaatgtttttaaAAGATGAGGATTAACAATTTGAAATTCTCCAGATAGTACTC 47349 || | | || || | || |||||||| ||||||||||| ||||| | || | Sbjct 394423 AACCAAATCACGT----AACAAATACGGATTAACGATTTGAAATTCACCAGACAAAACAC 394478 Query 47350 TACGGCTATATATATTACTTGTATATGGTTCTATAGATTCATTATTTCCAAAAATTTGAG 47409 |||| ||| || || || |||| || | | ||||||||| ||| |||||||||| Sbjct 394479 GACGGGAATACATGTTCGAGGTGAATGGCTCGAAACATTCATTATATCCTAAAATTTGAG 394538 Query 47410 CAGTTGATGCTGTAGGCATGGATGCAACTAATAAGCTATTTCTTACTCCATATTTTTGTA 47469 |||||||| || ||||| | ||| | | || ||| || | |||| || | | Sbjct 394539 ATGTTGATGCAGTTGGCATTGGTGCCAAGAGTAGAGAATTCCTGATACCATGTTCCTTAA 394598 Query 47470 TCTNNNNNNNNNNNNGTTTCCAATCCCAAAGATCTGATGGAACAACATTCCAAAAATCAT 47529 | | | ||||||||| || || | ||| |||||| | ||||| Sbjct 394599 TTTTCTGTTTCAAAGTGTCCCAATCCCAGAGGTCGGTTGGCTTTGTATTCCACATATCAT 394658 Query 47530 ATTGAAGAATTCCTTTACTTATCGGAGAACCATTATATGTTTTATAAGGACCGTATAGTT 47589 |||| | || |||| | | |||||||| | ||| |||| ||| ||||| | | || Sbjct 394659 ATTGCAAAACACCTTGAGAAACTGGAGAACCTTCATAGGTTTCATATGGACCATCTTTTT 394718 Query 47590 TAGCGAGTTCACAACTTGCTTCCAATGCACTATAATATATTGTTTCAAATATTTTTATGT 47649 ||| | |||||| || ||||||||| | ||| || |||||||| |||| || | Sbjct 394719 GAGCCAATTCACAGGATGATTCCAATGCGGCGTGATAAATGGTTTCAAAGATTTGAATAT 394778 Query 47650 TTAGATTCCTTGCTTCTGATGATTCAAAAGGATANNNNNNNNNNNNNAATGTATCTGCCA 47709 | | ||| | || ||| || || || ||| |||||||| |||| Sbjct 394779 TCAAGTTCTTGGCCTCTTGAGACTCGAATGGAACACGTAACATCATGAATGTATCAGCCA 394838 Query 47710 ATCCTTGAACACCAATACCAATTGGTCTATGAGTTTTATTAGAAAACTCAGCTTCTGGTA 47769 | || | |||||| | | | || ||||| || | | ||||| | |||||| | Sbjct 394839 AACCATTAACACCTAGAGCGATAGGTCTGTGCCTCATGTTAGAGTTTTTAGCTTCAATAA 394898 Query 47770 ATGGATATTTGTTTATATCTATAATTTTATTTAGANNNNNNNNNNNNNNNNNNACAATTT 47829 |||||| | ||| || || | ||| |||| | |||||| Sbjct 394899 CTGGATAATAGTTACGGTCAATGACTTTGTTTAAATTACGAGTAATAACCTTAGCAATTT 394958 Query 47830 CTCTTAATTTATTAAAATCAAAC---TTGTTATTTATAACAAAC-CTATTA--------- 47876 | || || ||| | | || | | | || | | | || || Sbjct 394959 CGTGTAGCCTAGCAAAGTTATACCATTGGGTCTTACCATCTTCCGCTGTTTGAATACAGG 395018 Query 47877 -----AGTGCTATAGATGCTAGATTACATACAGCTACCTCATTTGGATTAGTATATTGTA 47931 | || || || ||||||||||| ||||| ||||| |||| || |||| || Sbjct 395019 ATGGCAACGCAATGGAAGCTAGATTACAAACAGCAGTCTCATCTGGAGCAGAGTATTCTA 395078 Query 47932 TTATTTCAGCACATAGATTACCACATTTGATAGTACCCAAATTTTGATGATTATTNNNNT 47991 |||||| ||||| ||| | ||||||||||||| ||||| | || ||| | Sbjct 395079 CAATTTCACAACATAAGTTAGAAGATTTGATAGTACCTAAATTCTTCTGGTTACTCTTCG 395138 Query 47992 TGTTACATGCGTCCTTGTAAAGCATAAAAGGTGTTCCAGTTTCTATCTGAGATTCAATGA 48051 ||||||| || ||||| || ||||| || || || |||||||| | |||| || | || Sbjct 395139 TGTTACAAGCATCCTTATATAGCATGAATGGGGTACCAGTTTCAGTTTGAGCCTCCAAGA 395198 Query 48052 TAGATTTCCAAACAGTCCTAGCCTTTA-TAACAGCTCTAGCTTTATTATCATGTTCGTAT 48110 | | | ||| | | | || | ||||| | |||| | | || |||| Sbjct 395199 TGGCGTACCACA-ATTTCTGGGCTTTAATGGTTTTTCTACCGCGACCCTCTGCAACGTAA 395257 Query 48111 --TTAGTATATAACTTCTCAAATTCATCCCCATACACATTATCTAACCCAGGACATTCAT 48168 || ||||| ||| || || || || |||| |||| | |||| || || |||| Sbjct 395258 CGTTCGTATA--ACTCTTCGAACTCTTCGGCATAAACATCAGCTAAACCTGGCGCTTCAC 395315 Query 48169 TAGGACACATCAATGACCAATCCTCATCATTTTTT---ACTCTAGTCATAAATATATCTG 48225 | ||| | | ||| | ||| |||| | |||| | || | |||| |||| ||| | Sbjct 395316 TTGGAGAAAACAAGGTCCA---CTCACCGTTTTCTTGGACACGTTTCATGAATAAATCAG 395372 Query 48226 GTATCCAAAGAGCTATAAATAAATCCCTAGTTCTTAGTTCTTCATTGCCACTATTCCTTT 48285 | |||||||| ||| ||||||||| || | | | |||||| || || ||| || Sbjct 395373 GAATCCAAAGTGCTGGAAATAAATCTCTGGCACGAATTTCTTCCTTACCGTGATTTTTTC 395432 Query 48286 TAAGTTCAAGAAAGTCCATTATATCAGCATGCCATGGTTCTAAATATATTGCCATTACAC 48345 ||| |||| || || | || || |||||||||||||| | |||| || | | | Sbjct 395433 TAATATCAATGAAATCGAAAATGTCTGCATGCCATGGTTCAAGGTATAAAGCAAAAGCGC 395492 Query 48346 CTGGTCGTTTATTACCTCCTTGATCTATATATCTGGCAGTATTGTTATAAACTCTTAACA 48405 |||||| ||| ||||| ||||| || | ||| | |||||||||||| | |||| | || Sbjct 395493 CTGGTCTTTTGTTACCACCTTGGTCGACATAACGAGCAGTATTGTTAAAGACTCGAATCA 395552 Query 48406 TTGGGACAATACCATTTGATATACCATTGGTTCCCGAAATATAACTTCCACTAGCTCTTA 48465 | |||| | ||| || || ||||||| || || | ||| || || ||| | | Sbjct 395553 TGGGGATTAAACCGTTAGAGGTACCATTAGTACCTGCAATGTAGGAACCGGTAGAACGAA 395612 Query 48466 TATTACTAATTGAAATACCTATACCACCTGCCATTTTAGATATTAGAGCACACCGTTTAA 48525 | ||| || | || |||||||| || |||| || || | |||||| || | Sbjct 395613 TGTTATGGATATGTAGCCCAATACCACCAGCAGTTTTGGAAATCATAGCACATTCCTTCA 395672 Query 48526 GGGTATCATAAATTCCTTCTATACTATCATCTATCATATTTAATAGAAAACAACTAGACA 48585 |||||||||||||||||| ||| ||| || ||||| || || ||||| ||||| Sbjct 395673 AGGTATCATAAATTCCTTCAATAGAATCGTCCTTCATAGCTACTAAGAAACATGAAGACA 395732 Query 48586 TTTGCGGATGACAAGTTCCTGAATTAAATAATGTTGGAGATGCATGAATAAACCATTTCT 48645 |||| || ||| ||| || | || ||||| |||||||||||||| || || | | Sbjct 395733 TTTGTGGGTGAGGAGTACCAGCGTTGAATAAAGTTGGAGATGCATGGATGAAATACCTTA 395792 Query 48646 CTGATAACAATTTATATGTTTCAATAACAGAATCTATATCCCATTGATGTATACCTATAG 48705 || | ||| || || ||||| ||||| || | ||||| ||| ||||| | | Sbjct 395793 GAGACATCAAGTTGTAAGTTTCTATAACGGACTTGATATCTGTACCATGGATACCAACTG 395852 Query 48706 ATACACGCATTAACATATATTGAGGTCTTTCAACAATTTTGTTATTTATTTTCAAAAGAT 48765 |||| | ||| | | || |||||| | |||| ||| | ||| | ||| |||| Sbjct 395853 ATACTCTCATGATTAAATGTTGAGGACGTTCAGCAACCTCACCATTCGTCCTCAGCAGAT 395912 Query 48766 ATGATTTTTCCAATGTTTTAAAACCAAAATAGTTGTATGAAAAGTCGTTATCATTAATAA 48825 | || ||||||||| ||||| ||||| |||||| || ||| || |||||| | | Sbjct 395913 AAGAACGTTCCAATGTCTTAAATCCAAAGTAGTTGAATTGAAAATCCCTATCATAGACTA 395972 Query 48826 TTGATGAATTTATTCTTTCCTTATGTT-TATATACTACATCCATTACATTTTTTGATATA 48884 | | || |||| | ||||| | || ||| || | ||| || | || || || Sbjct 395973 TAGCAGAGTTTAATTCGTCCTTGTTTTCCATA-ACGATATCGTAGACTTCTTGAGAAATC 396031 Query 48885 ATTG-------------ATTCCTTG--------------TAAAGATCTTCTACAACATCA 48917 || | ||| ||| || | ||| | ||| | Sbjct 396032 ATAGGAGAGTGTACCCCATTTTTTGGATTCACATAGGAATATAAATCAGTAATAACTTGC 396091 Query 48918 CTAAATAttttttttGTTTCTTTATGAAGATTAGATATAGATATTCTAGCAGCTAATATA 48977 |||| ||| |||||| |||||| ||||| || || | ||||||||||||| | Sbjct 396092 GAGAATAGTTTCGTTGTTTGTTTATGTAGATTCGAAATGGCAATTCTAGCAGCTAGAGTG 396151 Query 48978 GCATAATCTGGATGAATTGTTGTACATGTA-CTAGATATTTCTGCTGCTAATATATCTAA 49036 |||||||| ||||| | ||||| |||||| | || |||| || ||||| | ||||| Sbjct 396152 GCATAATCAGGATGCACCGTTGT-CATGTAGGCACATGTTTCAGCAGCTAAATTGTCTAA 396210 Query 49037 TTCTTTAGTAGTTACACCTGTATATATTCCTTGAAT--AACTTTCATTGCTATATTTACT 49094 ||| |||||| |||||| ||| | ||| ||| || || | | ||| || || Sbjct 396211 TTCAACAGTAGTGACACCTTCATAGACACCTGAAATTATACGTTGA--GTTATCTTGACA 396268 Query 49095 GGATCTATATGATCCATATCCAGTCCATAACATAAtttttttATTCTAGATGTAATTTTA 49154 | ||| |||||| | |||| ||||||||||| | || | | ||| ||||| Sbjct 396269 GCATCAATATGAGCTGGGTCCAACCCATAACATAAACGTGAGATACGGGCTGTGATTTTG 396328 Query 49155 TCAAACATTATATTCTCTTTACGACCGTCACGTTTTATA-ACAAACATCTTTA 49206 ||||| | | |||||| ||||| | | ||||||| || ||||| |||| Sbjct 396329 TCAAATCTAACGGGTTCTTTATGACCGCCTC-TTTTATAGACGAACATATTTA 396380 >seq29 Length=1538644 Score = 158 bits (174), Expect = 1e-33 Identities = 310/453 (68%), Gaps = 14/453 (3%) Strand=Plus/Minus Query 48117 TATAACTTCTCAAATTCATCCCCATACACATTATCTAACCCAGGACATTCATTAGGACAC 48176 |||| || || ||||| || ||||| || | | || |||||| ||||| || | Sbjct 479168 TATAGTTTGTCGAATTCTTCTCCATAGACTTCACTCAAGCCAGGAGCTTCATCTGGGCTA 479109 Query 48177 ATCAATGACCAATCCTCATCATTTTTTACTCTAGTCATAAATATATCTGGTATCCAAAGA 48236 | || ||||| ||||||| || || | |||| || | || || ||||| | Sbjct 479108 AATAAAGACCAGTCCTCATTGGATTGCACACGTCTCATGAAAAGGTCAGGAATCCACAAC 479049 Query 48237 GCTATAAATAAATCCCTAGTTCTTAGTTCTTCATTGCCACTATTCCTTTTAAGTTCAAGA 48296 || | ||| ||||| |||| ||| |||||||| || ||| ||| || |||| ||| Sbjct 479048 GCAAAAAACAAATCTCTAGCTCTCAGTTCTTCTTTACCATGATTTTTTCGGAGTTGCAGA 478989 Query 48297 AAGTCCATTATATCAGCATGCCATGGTTCTAAATATATTGCCATTA-CACCTGGTCGTTT 48355 || || | || || | |||||||| |||| ||| || | || | | || || ||||| Sbjct 478988 AAATCGAAAATGTCGGAGTGCCATGGCTCTAGATAGATA-CAATAAGCGCCAGGACGTTT 478930 Query 48356 ATTACCTCCTTGATCTATATATCTGGCAGTATTGTTATAAACTCTTAACATTGGGACAAT 48415 ||||| |||||||| | |||||| |||||||||||| | || | || |||||| || | Sbjct 478929 GTTACCGCCTTGATCAACATATCTAGCAGTATTGTTAAATACACGTAGCATTGGCACTAA 478870 Query 48416 ACCATTTGATATACCATTGGTTCCCGAAATATAACTTCCACTAGCTCTTATATT--ACTA 48473 |||| | || || ||||||| ||| || | | || |||||||| || ||||| | Sbjct 478869 ACCACTGGAAATTCCATTGGATCCTGAGACAAAAGCACCACTAGCCCTAATATTCGAGAC 478810 Query 48474 ATTGAAATACCTATACCACCTGCCATTTTAGATATTAGAGCACACCGTTT----AAGGGT 48529 || | || ||||| ||||||| | || ||||| | || |||||| ||| || Sbjct 478809 ATGG--ATCCCTATCCCACCTGACGCCTTCGATATCAAAG----CCGTTTTATGAAGTGT 478756 Query 48530 ATCATAAATTCCTTCTATACTATCATCTATCAT 48562 | | |||| || || || ||| || ||||| Sbjct 478755 TTTAAAAATGCCATCGATGGAATCCTCCATCAT 478723 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 562108476787440