Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Torulaspora_20microellipsoides_20[genbank_20GCA_5F900186055.1_202017 -06-15] 46 sequences; 10,414,811 total letters Query= NC_021312.1 Length=459984 Score E Sequences producing significant alignments: (Bits) Value seq27 201 3e-46 seq41 140 1e-27 seq43 116 1e-20 seq17 89.7 2e-12 seq29 84.2 6e-11 >seq27 Length=921605 Score = 201 bits (222), Expect = 3e-46 Identities = 619/944 (66%), Gaps = 29/944 (3%) Strand=Plus/Plus Query 155587 CAATAGACGCCAGATTACATACCGCAGTCTCCT-TGTCGTCGCTGTATTCTACAATCTCA 155645 |||| || || |||||||| || |||||||| | || | | |||||||||||| ||| Sbjct 395028 CAATGGAAGCTAGATTACAAACAGCAGTCTCATCTGGAGCAGA-GTATTCTACAATTTCA 395086 Query 155646 CAGCACAGGTTAGAACTCTTGATGGTGCCTAAATTCTTCTGGTTAGATTTACTGTTACAA 155705 || || | ||||||| ||||| || |||||||||||||||||| || |||||||| Sbjct 395087 CAACATAAGTTAGAAGATTTGATAGTACCTAAATTCTTCTGGTTACTCTTCGTGTTACAA 395146 Query 155706 GCATCCTTGTATAGAATGTATGGGGTTCCTGTCTCCATCTGTGCGTCCAGAATCTTTAGC 155765 |||||||| ||||| ||| ||||||| || || || | || || |||| || | Sbjct 395147 GCATCCTTATATAGCATGAATGGGGTACCAGTTTCAGTTTGAGCCTCCAAGATGGCGTAC 395206 Query 155766 CAGAGGTCACGGGCATTAATTTGCTTGTTGTATCTG---CCT-TCCGACTCATATTTCAT 155821 || | | |||| ||||| | || || || | ||| | | || | ||| | Sbjct 395207 CACAATTTCTGGGCTTTAAT--GGTTTTTCTACCGCGACCCTCTGCAACGTAACGTTCGT 395264 Query 155822 ATACAGCGTTCGGTAATCCTCACCGTAACAATCACTCAGTCCAGGGCACTTATCGGGGC- 155880 ||| | |||| | || || | ||| |||| | || || | ||| | || Sbjct 395265 ATAACTC-TTCGA-ACTCTTCGGCATAAACATCAGCTAAACCTGG-CGCTTCACTTGGAG 395321 Query 155881 AAAACAGCGACCAAATTTTATTACCGATT------ACACGCTCCATAAATACATCACTCG 155934 |||||| | ||| | |||| || ||||| | ||| |||| |||| Sbjct 395322 AAAACAAGGTCCAC------TCACCGTTTTCTTGGACACGTTTCATGAATAAATCAGGAA 395375 Query 155935 CCCAAATAGCATAGAAA-AGGTCCCTTGCCTTTGACTCCTCATCGCCGTGATTCTTCCGT 155993 ||||| || | |||| | || || || || || | |||||||| || | Sbjct 395376 TCCAAAGTGC-TGGAAATAAATCTCTGGCACGAATTTCTTCCTTACCGTGATTTTTTCTA 395434 Query 155994 AGCTCTAAGAATTCCTCAATATCAGGATGGTGTGGCTCCAGATACATAGCAAAACTACCA 156053 | || | ||| || ||| || | ||| ||| || || || | ||||||| || Sbjct 395435 ATATCAATGAAATCGAAAATGTCTGCATGCCATGGTTCAAGGTATAAAGCAAAAGCGCCT 395494 Query 156054 TTCCTCTTG---CCACCCTGATCTACATACCGAGCAGTCTTATTGAAGACACCTAGCATA 156110 || ||| ||||| || || ||||| |||||||| || || ||||| | | ||| Sbjct 395495 GGTCTTTTGTTACCACCTTGGTCGACATAACGAGCAGTATTGTTAAAGACTCGAATCATG 395554 Query 156111 GGAATAATACCATTGGAAGTGCCATTGGTTCCGCGAATATGCGAACCAGATGAGCGAACA 156170 || || | ||| || || || ||||| || || ||| | ||||| | || |||| Sbjct 395555 GGGATTAAACCGTTAGAGGTACCATTAGTACCTGCAATGTAGGAACCGGTAGAACGAATG 395614 Query 156171 TTATGAATATGTAGTCCAATACCACCTGACCATTTAGAAATTTGAGCGCATTCCTTTACA 156230 ||||| |||||||| ||||||||||| | ||| ||||| ||| |||||||| | Sbjct 395615 TTATGGATATGTAGCCCAATACCACCAGCAGTTTTGGAAATCATAGCACATTCCTTCAAG 395674 Query 156231 GTATTGAAAATACCTTCAATAGAATCATCTTCCATTGATAGTAGATAGCACGAACTTAAT 156290 |||| |||| |||||||||||||| || | ||| | || || | || ||| | | Sbjct 395675 GTATCATAAATTCCTTCAATAGAATCGTCCTTCATAGCTACTAAGAAACATGAAGACATT 395734 Query 156291 TGAGGTCGTGGTGTTCCAGCGTTGAATAGTGTAGGTGTTGCATGAATAAAATACTTATTA 156350 || || | || || ||||||||||||| || || | |||||| || |||||| | | Sbjct 395735 TGTGGGTGAGGAGTACCAGCGTTGAATAAAGTTGGAGATGCATGGATGAAATACCTTAGA 395794 Query 156351 GACATATAATCGTATGTCTCCTTAATCTTCTCAAGATTAGACCCGTGAATACAGATAGAG 156410 ||||| | | ||| || || ||| || | || | || || |||| | || Sbjct 395795 GACATCAAGTTGTAAGTTTCTATAACGGACTTGATATCTGTACCATGGATACCAACTGAT 395854 Query 156411 ACCCTCATCCACATATGCTGAGGACGCTCTACAATCACTCCATCAATTCGCAGAAGGTAT 156470 || ||||| | ||| |||||||| || ||| | | |||| | | ||| || || Sbjct 395855 ACTCTCATGATTAAATGTTGAGGACGTTCAGCAACCTCACCATTCGTCCTCAGCAGATAA 395914 Query 156471 GCGCGTTCCAGAGTTTTAAACCCGAAATAATCAAACAGAAAATC 156514 | ||||||| || ||||| || || || | || ||||||| Sbjct 395915 GAACGTTCCAATGTCTTAAATCCAAAGTAGTTGAATTGAAAATC 395958 Score = 134 bits (148), Expect = 4e-26 Identities = 258/378 (68%), Gaps = 2/378 (1%) Strand=Plus/Minus Query 288850 CTATCAAACCTACCAGAACGAGTTAATGCTGGGTCTAATATATCGGCTCTGTTTGTTGCT 288909 |||||||| || || | | | ||||| || |||| | |||| ||| |||||| | Sbjct 546354 CTATCAAATCTTCCTGGTCTCATCAATGCAGGATCTAGAACGTCGGGTCTATTTGTTCCC 546295 Query 288910 GCCAATACAACAA-TAGATTCGGTTTGCTTAAATCCATCCATACTTGTTAAAATTTGATT 288968 || || ||||| | | ||| || | |||| ||| |||||||| || | |||||| Sbjct 546294 GCTAAAACAACCACTTGATCCGATGTGCTAAAA-CCATCCATCTCCACCAACAGTTGATT 546236 Query 288969 AAGTGTTTGTTCCCTTTCATCATTTGAACCTCTTGAATCACCCGAATCGCTCCttttttt 289028 | || ||| ||||||||||| || |||| | |||| | || ||| | ||| Sbjct 546235 TAAGGTAGCTTCTCTTTCATCATTCGAGCCTCCCATAGCACCACCTTTGCCCCTCTCTTT 546176 Query 289029 ACCAACAGCATCAATTTCGTCAATGAAAATCACACACGGAGAATTTTGTCTCGCAATTGC 289088 ||||| ||||| ||||| || | ||||| | | | |||| ||| ||| || | | Sbjct 546175 ACCAATGGCATCGATTTCATCTACAAAAATGATAGAAGGAGCCATTTTTCTTGCTTGTTC 546116 Query 289089 AAATAATTCTCTTACACGGGATGCTCCAAGACCAACATACATTTCTACAAATTCAGAAGC 289148 ||| || || | || | || || |||| ||| ||| ||||||| |||||||||||| | Sbjct 546115 AAACAAATCACGAACTCTTGAAGCACCAACACCGACAAACATTTCAACAAATTCAGAACC 546056 Query 289149 GGATACTTGAATGAATGTTACATTTGCTTCGCCTGCTACTGCCCTCGCCAGAAGTGTCTT 289208 || || || ||| | ||| |||||| || ||| || |||||| | ||||| Sbjct 546055 AGAAACGGAAAGGAAGGGTACCCCTGCTTCACCAGCTGTGGCTTTCGCCAATAAAGTCTT 545996 Query 289209 ACCTGTTCCAGGTGGTCC 289226 |||||| ||||| || || Sbjct 545995 ACCTGTACCAGGAGGCCC 545978 >seq41 Length=1599359 Score = 140 bits (154), Expect = 1e-27 Identities = 500/756 (66%), Gaps = 28/756 (4%) Strand=Plus/Minus Query 133203 ATGAAAAACATTTTATTTCTATGATTTTAGCGTTTTTTGCTGCGAGTGATGGTATTGTTC 133262 |||||| | ||| ||||| | | | || || ||||| || || ||||||||| ||| Sbjct 1219416 ATGAAAGATTTTTCATTTCAAGGGTCTTGGCATTTTTCGCCGCTTCTGATGGTATCGTTA 1219357 Query 133263 TTGAAAATTTAGGAACACGGTTTATGGG-AGAAGTTCAACTGGCCGAAGCCC-GTGCCTT 133320 ||||||||| || | | ||| | | |||||||||| | | |||||| ||| || Sbjct 1219356 ATGAAAATTT-GGTAGAGAATTTCTCAGCAGAAGTTCAAATTCCTGAAGCCAAGTGT-TT 1219299 Query 133321 TTATGGGCTACAGATTGCGATGGAAAATATCCATTCTATCACATATTCTACTCTAATTGA 133380 ||||||| | || ||| |||||||||||| |||||| || || ||| || || || Sbjct 1219298 TTATGGGTTTCAAATTATGATGGAAAATATTCATTCTGAGACTTACTCTTTACTGATCGA 1219239 Query 133381 TACTTACATCAAAGATACCGTCCAGAAGCACAAACTATTCAACGCCATTAGCGAAT-TTC 133439 |||||| |||||||| | | | | | ||||| || | | | ||| ||| Sbjct 1219238 TACTTATATCAAAGACCCAAAGGAAAGTGATTTCTTGTTCAATGCTA-TCGATAATATTC 1219180 Query 133440 CTTGTATTAAAAAGAAATCTGACTGGGCTATTAAATGGATCCAGGACAAGCGTGCGAGTT 133499 | |||||| | ||| | || ||||| |||| |||||| || || | ||| | || Sbjct 1219179 CACAAATTAAAGAAAAAGCAGAATGGGCAATTAGATGGATTCAAGATAGCAATGCAATTT 1219120 Query 133500 TTGCTACTCGTCTCGTTGCTTTTGCTGTAGTAGAGGGCAtttttttCAGTGGTGCGTTCT 133559 | ||| | | ||||| ||||||| | | || || ||||| ||| |||| | || | Sbjct 1219119 TCGCTGAAAGATTAGTTGCATTTGCTGCAATTGAAGGTATTTTCTTCTCTGGTTCCTT-T 1219061 Query 133560 GCT-CTATTTTTTGGCTTAAAAAGCGTGGTATTCTACCTGGACTGTGTTTTTCTAACGAA 133618 ||| |||| |||||| | || ||| ||| | | ||||| || ||||| || || Sbjct 1219060 GCTGCTATCTTTTGGTTAAAGAAGAAGGGTTTAATGCCTGGTTTGACCTTTTCAAATGAG 1219001 Query 133619 CTTATTTCAAGGGACGAGGCACTTCACACCGAATTTGC-CGTTT-TACTTCACTCTAAAT 133676 | |||| || || || | | || || || ||||| |||| | ||| ||| || Sbjct 1219000 TTGATTTGCAGAGATGAAGGTTTACATACAGATTTTGCTTGTTTGTTATTCGCTC---AT 1218944 Query 133677 TAGAGCGACCACTCAAAAAGAATAA-GATTGAAGAAATTATTAGAGAAGCGGTTGAAATT 133735 | || | | || || | || || ||| | ||||| | ||||| ||||||||| Sbjct 1218943 TTGAAAAATAAACCAGAACCATCAATTATAGAAAAGATTATCACCGAAGCTGTTGAAATT 1218884 Query 133736 GAGGTTGAATTTATCAATAGTGCTCTGCC-GTGCCGTTTAATTGGTATGAATGATGTGCT 133794 || || | ||| |||| |||| || || ||| | |||||||||| | || Sbjct 1218883 GAAAAAAGATATTTCATGGATGCTTTGCCAGTATCG-TTATTGGGTATGAATGCCGATCT 1218825 Query 133795 GATGCAGCGTTATATTGAATTTGTAGCTGACAG---ATTGGCCGTTCAGTTAGGTGGGGA 133851 ||| | | || |||||||||| ||||| || ||| | || | |||||| | Sbjct 1218824 AATGAACCAATACGTTGAATTTGTCGCTGATAGACTATTAGTCGCT---TTAGGTAACAA 1218768 Query 133852 TAAG-ATTT-ACGGTTCCGCCAATCCATTCGACTGGATGGAGAGCATTAGCATTGAAT-C 133908 ||| |||| | ||| | |||||||| || | ||||| | |||| ||||| | Sbjct 1218767 AAAGTATTTCAACGTT--ACAAATCCATTTGATTTCATGGAAAACATT-TCATTGGCTGG 1218711 Query 133909 AAAGACTAATTTCTTCGAGGCGAGGGTAGCCGAATA 133944 |||||||| ||||||||| ||| || |||| || Sbjct 1218710 TAAGACTAACTTCTTCGAGAAGAGAGTTTCCGATTA 1218675 >seq43 Length=816610 Score = 116 bits (128), Expect = 1e-20 Identities = 145/196 (74%), Gaps = 2/196 (1%) Strand=Plus/Minus Query 302491 TCAATTCCGTCATCGCCGTAGGAATACTGAATGATTTTGTTCTTGTTATTTC-TTACGGT 302549 || || || || || || ||| | ||||||||| ||| | || | ||| || ||| Sbjct 328046 TCCATACCATCCTCACCATAGACAAACTGAATGACGTTGCCCA-GTGAGTTCCTTGTGGT 327988 Query 302550 CATATCATAACCAATCATAATGTCTTCCATACTCTTGATTAAACGACGCTGAATATAACC 302609 |||||||| || |||||| ||||| | | ||| | |||||||| ||||||||||| Sbjct 327987 ACTATCATAATGAACCATAATATCTTCTAGAGCCTTCACCAAACGACGTTGAATATAACC 327928 Query 302610 AGTTGTAGATGTTTTTACAGCTGTATCAATTAGACCAACACGACCACCCATAGCATGGAA 302669 ||| || ||||| |||||||| || |||| ||| |||||||||||||||| ||||| Sbjct 327927 TGTTTCAGCCGTTTTAACAGCTGTGTCGATTAAACCTTCACGACCACCCATAGCGTGGAA 327868 Query 302670 GAATAGCTCTTCCGGT 302685 ||| | || | |||| Sbjct 327867 GAAGAATTCCTGCGGT 327852 >seq17 Length=1402967 Score = 89.7 bits (98), Expect = 2e-12 Identities = 173/253 (68%), Gaps = 8/253 (3%) Strand=Plus/Minus Query 251412 ACCACACTTATTACACACATGGACGCTGTAAGCATCAGATGCGTC-ATATAGCCGACCCT 251470 |||||| || ||| ||||| || || | ||||| || || || || | | || | Sbjct 421120 ACCACAGATACCACAGACATGTACTCTAAATGCATCTGAGGCCTCCATCAATCTTTCCTT 421061 Query 251471 TGG---TGAAGCGAGATGCACCGTGTGAAATCATACAATCACGCTCCATTTCACCGAAAC 251527 | | ||||||| ||||| || | ||||||||||||||| |||||||||||||| | Sbjct 421060 TAGGAATGAAGCG----GCACCATGAGCAATCATACAATCACGTTCCATTTCACCGAATC 421005 Query 251528 GAAGACCACCATCGCGAGCCCTACCCTCGGCAGGCTGACGAGTGAGATTAACCATAGGAC 251587 | ||||||||| | | |||||||| |||| || | || ||| ||| || | Sbjct 421004 TCAAACCACCATCTCTGGATCTACCCTCAACAGGTTGTCTCGTTAGAACTTGCATTGGCC 420945 Query 251588 CGATGGAGCGGCTATGTTGCTTATCATTTACCATATGCTTGAGACGCTGGTAGAATGCGG 251647 | || | ||| |||||||| ||||||||| | ||||| ||||| | | | Sbjct 420944 CACGGGCTCTTGCATGAATCTTATCATCCACCATATGCCTTAGACGTTGGTAATAGGTAG 420885 Query 251648 GACCGATGAAGAT 251660 | |||| |||||| Sbjct 420884 GTCCGAAGAAGAT 420872 Score = 87.8 bits (96), Expect = 5e-12 Identities = 104/141 (74%), Gaps = 0/141 (0%) Strand=Plus/Minus Query 233273 GCACCGTGAGCAATCATACAATCACGTTCCATTTCACCAATACGCAGACCACCATCATTT 233332 ||||| |||||||||||||||||||||||||||||||| | | || ||||||||| | Sbjct 421047 GCACCATGAGCAATCATACAATCACGTTCCATTTCACCGAATCTCAAACCACCATCTCTG 420988 Query 233333 GACCTACCCTGGACTGTTTGACGAGTTAAAACAGTTCTTGGACCCTGAGCACGATAATTA 233392 || ||||||| || | ||| | |||| ||| |||| || | || | || | Sbjct 420987 GATCTACCCTCAACAGGTTGTCTCGTTAGAACTTGCATTGGCCCACGGGCTCTTGCATGA 420928 Query 233393 ATTTTATCTTTAACCATATGC 233413 || ||||| | ||||||||| Sbjct 420927 ATCTTATCATCCACCATATGC 420907 Score = 87.8 bits (96), Expect = 5e-12 Identities = 209/312 (67%), Gaps = 17/312 (5%) Strand=Plus/Plus Query 288850 CTATCAAACCTACCAGAACGAGTTAATGCTGGGTCTAATATATCGGCTCTGTTTGTTGCT 288909 |||||||| ||||| | | ||| || ||||| ||||| | || ||||| | Sbjct 640747 CTATCAAATCTACCCGGTCTCAGTAAAGCACTATCTAAGATATCAGGCCTATTTGTCCCG 640806 Query 288910 GCCAATACAACAATAGATTCGGTTTGCTTAAATCCATCCAT----ACTTGTTAAAATTTG 288965 || | ||||||| | || | | | ||||||| ||||| ||| || | ||| Sbjct 640807 GCAAGAACAACAACATGATCTGCTGGAGTAAATCCGTCCATTTCAACTAGT----AGTTG 640862 Query 288966 ATTAAGTGTTTGTTCCCTTTCATCATTTGAACCTCTTGAA---TCACCCGAATCGCTCCt 289022 ||| | || | ||||||||| ||||||| ||| ||| | |||| || || | Sbjct 640863 ATTCAAAGTATTTTCCCTTTCGTCATTTG---CTCCAGAAATGTTACCCT--TCTGTC-T 640916 Query 289023 ttttttACCAACAGCATCAATTTCGTCAATGAAAATCACACACGGAGAATTTTGTCTCGC 289082 |||||| | |||||||||||| || || || | | | | || | ||| | ||| || Sbjct 640917 GGCTTTACCGATAGCATCAATTTCATCTATAAACACAATAGATGGTGCATTCTCTCTTGC 640976 Query 289083 AATTGCAAATAATTCTCTTACACGGGATGCTCCAAGACCAACATACATTTCTACAAATTC 289142 | || ||||| || | ||| | ||||| || | |||||| ||||||| |||||||| Sbjct 640977 AGTTTTGAATAAGTCGCGTACTCTTGATGCACCTACACCAACGAACATTTCGACAAATTC 641036 Query 289143 AGAAGCGGATAC 289154 ||| | ||||| Sbjct 641037 GGAACCTGATAC 641048 >seq29 Length=1538644 Score = 84.2 bits (92), Expect = 6e-11 Identities = 109/151 (72%), Gaps = 0/151 (0%) Strand=Plus/Minus Query 155591 AGACGCCAGATTACATACCGCAGTCTCCTTGTCGTCGCTGTATTCTACAATCTCACAGCA 155650 ||| || || ||||| ||||| || || | | ||| |||||||| || ||||| || Sbjct 479400 AGATGCGAGGTTACAAACCGCTGTTTCATCCTTTGAGCTATATTCTACGATTTCACAACA 479341 Query 155651 CAGGTTAGAACTCTTGATGGTGCCTAAATTCTTCTGGTTAGATTTACTGTTACAAGCATC 155710 |||||||| || || || |||||||||||||| || || || || |||| ||| Sbjct 479340 AAGGTTAGATGATTTTATTGTTCCTAAATTCTTCTGATTTGACTTTTCATTGCAAGAATC 479281 Query 155711 CTTGTATAGAATGTATGGGGTTCCTGTCTCC 155741 |||||||| ||| |||| || |||||| Sbjct 479280 CTTGTATAACATGAATGGTCCACCAGTCTCC 479250 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1471816732547502