Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Wickerhamia_20fluorescens_20[genbank_20GCA_5F001599155.1_202016-03-
01] 20 sequences; 13,178,500 total letters
Query= NC_001132.2
Length=161773
Score E
Sequences producing significant alignments: (Bits) Value
seq1 170 2e-37
>seq1
Length=2974285
Score = 170 bits (188), Expect = 2e-37
Identities = 577/885 (65%), Gaps = 23/885 (3%)
Strand=Plus/Minus
Query 16674 TTTGGTAATCGCTAACGCGTTTTTCGAAAAAGTTAGTTTTGCCCTCTAGAGATATATTCT 16733
||||||| || ||||| | |||||||||||||| || || || | | || || || |
Sbjct 233317 TTTGGTAGTCACTAACTCTCTTTTCGAAAAAGTTGGTCTTTCCTGCCAACGAAATGTTTT 233258
Query 16734 CCATGAAATCAAAAGGATTAGTAGC--TGAAAATATTTTAGAGTACCCCAGTTCGGCGAT 16791
|||| || ||||| ||||||||| | || ||| |||| || || | | || | |
Sbjct 233257 CCATAAAGTCAAAGGGATTAGTAACATTGTAAACCTTTT--CGTTGCCTAATGCGACAAG 233200
Query 16792 TAATCTATCCGCTACAAATTCTATATATTGGCACATTAATTCGCAGTTCATTCCTATAAG 16851
|||||| || || ||||| || | || |||||||| |||| |||||||| || | |
Sbjct 233199 TAATCTGTCGGCAACAAACTCCACGTACTGGCACATCAATTTACAGTTCATACCCA-ACA 233141
Query 16852 ACG-TACCGGAAGAGCTTCCGTCAAAAA-TCGTTGCTCTATAACAACCGCTTCCTTAATA 16909
||| | || | ||| || || ||||| || || || ||| |||| || || | |||
Sbjct 233140 ACGAAATAGGCAAAGCATCAGTGAAAAACTCCTT-TTCAATAGCAACGGCCTCTGTGATA 233082
Query 16910 A--TACTAG-CAACTCGTTCCTCGGACGGTGTATGTTT---AAGATGTTTAAACATCAGA 16963
| | || | ||| | |||| || ||||| ||| || || | ||
Sbjct 233081 ATCTTCTCGACAATAGCAGCATCGG-----GTCTGTTTTGCAAG-TGGGAGAATAACAAG 233028
Query 16964 CATGCGAAATCGCAATGTAATCCCTCGTCTCTGCTGATAAGTTCGTTAGAAAATGTCAAC 17023
|| || |||||| || || ||||| || | || ||| | ||||| || || |||||
Sbjct 233027 CAAGCAAAATCGGTGTGCAAACCCTCATCACGGCAGATTAACTCGTTGGAGAAAGTCAAA 232968
Query 17024 CCGGGCATCTTTCCTCGTTTCTTTAACCAAAATATCGCGGCGAACGACCCAGAAAAGAAT 17083
|| |||||| |||| ||||| |||||||| || | || ||||| ||| |||||
Sbjct 232967 CCAGGCATCAAGCCTCTCTTCTTCAACCAAAAGATGGATGCAAACGATCCACTGAAGAAA 232908
Query 17084 ATACCCTCGACGGATGCAAACGCGATTAATCGTTCGGCGTACGTCGCGTCTTTGTTACGA 17143
||||| || || | ||||| || | | |||||| | | || || | | ||
Sbjct 232907 ATACCTTCAACAGCAGCAAATGCAACAAGACGTTCGCCAAATAAGGCCTCGTCATCACTG 232848
Query 17144 ATCCATTTCTGCACCCACTCGGCTTTTTGCTTTATGCAATCCATCGTTTCTATGGCCTTA 17203
||||| |||| || || || | || |||||| || || || || || ||
Sbjct 232847 ATCCAGCGTAAAGCCCAGTCAGCCTTCTTTTTGATGCAAGGAATAGTCTCAATAGCATTG 232788
Query 17204 AATAATTTCTCTTTTTCCTGTAGGTCGATTATATACGTATCGATGAGTAGGCTGTACATT 17263
||||| ||| |||| |||| | ||||| || ||||| | | | ||| |
Sbjct 232787 AATAAAAAGTCTGCCTCCTTGGGGTCCTTGATATAGGTGTCGATCAACAAGGAGTAGGTC 232728
Query 17264 TCGGAGTGTATGTTCTCCATGGCTATCTGAAATCCGTAAAAGCATCGGGCTTCCGCTATT 17323
|| ||||| || || ||||| || || || |||||||||||| |||||| | ||
Sbjct 232727 TCTGAGTGGATATTTTCCATCATGATTTGGAAACCGTAAAAGCATTTGGCTTCTGGAATC 232668
Query 17324 TGAACTTCCACGTAGAATCGTTCCGCTAGATTTTCGTTCACGATGCCGTCGCTCGCGGCG 17383
||||| || | |||| ||| | | || ||||| || || || ||| || |||
Sbjct 232667 TGAACCTCGGCAGAGAAGTTCTCCACCAAGTTCTCGTTAACAATACCATCGGAAGCAGCG 232608
Query 17384 AAAAACGCCAATATATGCTTAATGAAATATTTTTCGT--CCGGTGTA-AGAACGCGCCAG 17440
||||| ||||| ||| | |||||| | |||| || | | || | ||||
Sbjct 232607 AAAAATGCCAAAATACGGGAAATGAAGAAACGCTCGTTGTCGTTCAAGCGATTGTTCCAG 232548
Query 17441 TCCTTTAAATCTTTGGATATATCCACTTCTTCGGGGGTCCAAAAACTAGCCACTGCCTTT 17500
|| | ||||| | ||| | ||| || | ||||||||| || |||| ||
Sbjct 232547 TCATGAGTGTCTTTTCCCAAATCGATTTCCTCTGCAGTCCAAAAAGATGCTTCTGCTTTC 232488
Query 17501 TTATACATATTCCAAATATCATTGTATTGTATGGGGAATACAACA 17545
|| ||||| | |||||| || | ||||| || ||||| | ||||
Sbjct 232487 TTGTACATTTGCCAAATCTCGTGGTATTTAATAGGGAAAAGAACA 232443
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 517545470613600
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |