Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Wickerhamia_20fluorescens_20[genbank_20GCA_5F001599155.1_202016-03- 01] 20 sequences; 13,178,500 total letters Query= NC_001132.2 Length=161773 Score E Sequences producing significant alignments: (Bits) Value seq1 170 2e-37 >seq1 Length=2974285 Score = 170 bits (188), Expect = 2e-37 Identities = 577/885 (65%), Gaps = 23/885 (3%) Strand=Plus/Minus Query 16674 TTTGGTAATCGCTAACGCGTTTTTCGAAAAAGTTAGTTTTGCCCTCTAGAGATATATTCT 16733 ||||||| || ||||| | |||||||||||||| || || || | | || || || | Sbjct 233317 TTTGGTAGTCACTAACTCTCTTTTCGAAAAAGTTGGTCTTTCCTGCCAACGAAATGTTTT 233258 Query 16734 CCATGAAATCAAAAGGATTAGTAGC--TGAAAATATTTTAGAGTACCCCAGTTCGGCGAT 16791 |||| || ||||| ||||||||| | || ||| |||| || || | | || | | Sbjct 233257 CCATAAAGTCAAAGGGATTAGTAACATTGTAAACCTTTT--CGTTGCCTAATGCGACAAG 233200 Query 16792 TAATCTATCCGCTACAAATTCTATATATTGGCACATTAATTCGCAGTTCATTCCTATAAG 16851 |||||| || || ||||| || | || |||||||| |||| |||||||| || | | Sbjct 233199 TAATCTGTCGGCAACAAACTCCACGTACTGGCACATCAATTTACAGTTCATACCCA-ACA 233141 Query 16852 ACG-TACCGGAAGAGCTTCCGTCAAAAA-TCGTTGCTCTATAACAACCGCTTCCTTAATA 16909 ||| | || | ||| || || ||||| || || || ||| |||| || || | ||| Sbjct 233140 ACGAAATAGGCAAAGCATCAGTGAAAAACTCCTT-TTCAATAGCAACGGCCTCTGTGATA 233082 Query 16910 A--TACTAG-CAACTCGTTCCTCGGACGGTGTATGTTT---AAGATGTTTAAACATCAGA 16963 | | || | ||| | |||| || ||||| ||| || || | || Sbjct 233081 ATCTTCTCGACAATAGCAGCATCGG-----GTCTGTTTTGCAAG-TGGGAGAATAACAAG 233028 Query 16964 CATGCGAAATCGCAATGTAATCCCTCGTCTCTGCTGATAAGTTCGTTAGAAAATGTCAAC 17023 || || |||||| || || ||||| || | || ||| | ||||| || || ||||| Sbjct 233027 CAAGCAAAATCGGTGTGCAAACCCTCATCACGGCAGATTAACTCGTTGGAGAAAGTCAAA 232968 Query 17024 CCGGGCATCTTTCCTCGTTTCTTTAACCAAAATATCGCGGCGAACGACCCAGAAAAGAAT 17083 || |||||| |||| ||||| |||||||| || | || ||||| ||| ||||| Sbjct 232967 CCAGGCATCAAGCCTCTCTTCTTCAACCAAAAGATGGATGCAAACGATCCACTGAAGAAA 232908 Query 17084 ATACCCTCGACGGATGCAAACGCGATTAATCGTTCGGCGTACGTCGCGTCTTTGTTACGA 17143 ||||| || || | ||||| || | | |||||| | | || || | | || Sbjct 232907 ATACCTTCAACAGCAGCAAATGCAACAAGACGTTCGCCAAATAAGGCCTCGTCATCACTG 232848 Query 17144 ATCCATTTCTGCACCCACTCGGCTTTTTGCTTTATGCAATCCATCGTTTCTATGGCCTTA 17203 ||||| |||| || || || | || |||||| || || || || || || Sbjct 232847 ATCCAGCGTAAAGCCCAGTCAGCCTTCTTTTTGATGCAAGGAATAGTCTCAATAGCATTG 232788 Query 17204 AATAATTTCTCTTTTTCCTGTAGGTCGATTATATACGTATCGATGAGTAGGCTGTACATT 17263 ||||| ||| |||| |||| | ||||| || ||||| | | | ||| | Sbjct 232787 AATAAAAAGTCTGCCTCCTTGGGGTCCTTGATATAGGTGTCGATCAACAAGGAGTAGGTC 232728 Query 17264 TCGGAGTGTATGTTCTCCATGGCTATCTGAAATCCGTAAAAGCATCGGGCTTCCGCTATT 17323 || ||||| || || ||||| || || || |||||||||||| |||||| | || Sbjct 232727 TCTGAGTGGATATTTTCCATCATGATTTGGAAACCGTAAAAGCATTTGGCTTCTGGAATC 232668 Query 17324 TGAACTTCCACGTAGAATCGTTCCGCTAGATTTTCGTTCACGATGCCGTCGCTCGCGGCG 17383 ||||| || | |||| ||| | | || ||||| || || || ||| || ||| Sbjct 232667 TGAACCTCGGCAGAGAAGTTCTCCACCAAGTTCTCGTTAACAATACCATCGGAAGCAGCG 232608 Query 17384 AAAAACGCCAATATATGCTTAATGAAATATTTTTCGT--CCGGTGTA-AGAACGCGCCAG 17440 ||||| ||||| ||| | |||||| | |||| || | | || | |||| Sbjct 232607 AAAAATGCCAAAATACGGGAAATGAAGAAACGCTCGTTGTCGTTCAAGCGATTGTTCCAG 232548 Query 17441 TCCTTTAAATCTTTGGATATATCCACTTCTTCGGGGGTCCAAAAACTAGCCACTGCCTTT 17500 || | ||||| | ||| | ||| || | ||||||||| || |||| || Sbjct 232547 TCATGAGTGTCTTTTCCCAAATCGATTTCCTCTGCAGTCCAAAAAGATGCTTCTGCTTTC 232488 Query 17501 TTATACATATTCCAAATATCATTGTATTGTATGGGGAATACAACA 17545 || ||||| | |||||| || | ||||| || ||||| | |||| Sbjct 232487 TTGTACATTTGCCAAATCTCGTGGTATTTAATAGGGAAAAGAACA 232443 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 517545470613600