Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Wickerhamia_20fluorescens_20[genbank_20GCA_5F001599155.1_202016-03- 01] 20 sequences; 13,178,500 total letters Query= NC_001266.1 Length=159857 Score E Sequences producing significant alignments: (Bits) Value seq1 105 7e-18 >seq1 Length=2974285 Score = 105 bits (116), Expect = 7e-18 Identities = 558/880 (63%), Gaps = 26/880 (3%) Strand=Plus/Minus Query 15912 TTTGGTAATCACTAACGCGTTTTTCGAAGAAGTTAGTTTTTCCCTCTAAAGATATATTTT 15971 ||||||| |||||||| | |||||||| ||||| || ||||| | || || || |||| Sbjct 233317 TTTGGTAGTCACTAACTCTCTTTTCGAAAAAGTTGGTCTTTCCTGCCAACGAAATGTTTT 233258 Query 15972 CCATAAAATCAAAGGGATTAGTAGC--TGAAAATATCTTAGAGTACCCCAGTTCCGTAAC 16029 ||||||| ||||||||||||||| | || || | ||| || || | | | || Sbjct 233257 CCATAAAGTCAAAGGGATTAGTAACATTGTAA--ACCTTTTCGTTGCCTAATGCGACAAG 233200 Query 16030 TAATCTATCTGCTACAAATTCTATATATTGACACATTAAGTCGCAATTAATTCCTATAAG 16089 |||||| || || ||||| || | || || ||||| || | || || || || | | Sbjct 233199 TAATCTGTCGGCAACAAACTCCACGTACTGGCACATCAATTTACAGTTCATACCCAACAA 233140 Query 16090 TCGTACCGGAAGAGCTTTTGTTAAAAATTGTTGTTCTATCACAACCGCTTCTTTAATGAT 16149 | || | ||| | || ||||| | | ||| || |||| || ||| | || || Sbjct 233139 CGAAATAGGCAAAGCATCAGTGAAAAACTCCTTTTCAATAGCAACGGCCTCTGTGATAAT 233080 Query 16150 ATCGGTGGCTCG--TGTTTCAG-ACGGTGTATGGTTT--AGGTGTTTAAACATTAGACAC 16204 | |||| | ||| | | || || ||| | ||| || | | || Sbjct 233079 CT-----TCTCGACAATAGCAGCATCGGGTCTGTTTTGCAAGTGGGAGAATAACAAGCAA 233025 Query 16205 GCGAAGTCGCAATGTAGTCCTTCGTCTCTGCTGATAAGTTCGTTGGAAAAAGTTAACCCT 16264 || || ||| || | || || || | || ||| | |||||||| ||||| || || Sbjct 233024 GCAAAATCGGTGTGCAAACCCTCATCACGGCAGATTAACTCGTTGGAGAAAGTCAAACCA 232965 Query 16265 GGCATTTTTCCTCGTTTCTTTAACCAGAATATCGCAGCAAATGACCCCGAAAAGAATATA 16324 ||||| |||| ||||| ||||| || || | ||||| || || ||||| ||| Sbjct 232964 GGCATCAAGCCTCTCTTCTTCAACCAAAAGATGGATGCAAACGATCCACTGAAGAAAATA 232905 Query 16325 CCCTCAACAGATGCAAAAGCGATTAATCGTTCCGCGTACGTAGCATCTTTATTACGAATC 16384 || ||||||| ||||| || | | ||||| | | || || | || || ||| Sbjct 232904 CCTTCAACAGCAGCAAATGCAACAAGACGTTCGCCAAATAAGGCCTCGTCATCACTGATC 232845 Query 16385 CATTTCTGTA---CCCATTCGGCTTTTTGTTTTATACAATCCATCGTTTCTATGGCCTTA 16441 || ||| |||| || || || | ||| || ||| || || || || || || Sbjct 232844 CA---GCGTAAAGCCCAGTCAGCCTTCTTTTTGATGCAAGGAATAGTCTCAATAGCATTG 232788 Query 16442 AACAATTTCTCTTTTTCCTGAATATCGATTATATACGTATCAATCAGTAAACTGTACATT 16501 || || ||| |||| || | ||||| || || |||| || ||| | Sbjct 232787 AATAAAAAGTCTGCCTCCTTGGGGTCCTTGATATAGGTGTCGATCAACAAGGAGTAGGTC 232728 Query 16502 TCTGAGTGTATGTTCTCTATGGCTATCTGAAATCCATAGAAGCATCGAGCCTCCGCTATT 16561 |||||||| || || || || || || || || || |||||| || || | || Sbjct 232727 TCTGAGTGGATATTTTCCATCATGATTTGGAAACCGTAAAAGCATTTGGCTTCTGGAATC 232668 Query 16562 TGTACTTCCACGTAAAATCGTTCCGCCAGGTTCTCATTCACGATACCGTCACTTGCAGCA 16621 || || || | | || ||| ||| |||||| || || ||||| || ||||| Sbjct 232667 TGAACCTCGGCAGAGAAGTTCTCCACCAAGTTCTCGTTAACAATACCATCGGAAGCAGCG 232608 Query 16622 AAAAACGCCAATATGTGCTTAATGAAATATTTTTCGTCAGATGT--AA--GAATATGCCA 16677 ||||| ||||| || | |||||| | |||| | || || || | | ||| Sbjct 232607 AAAAATGCCAAAATACGGGAAATGAAGAAACGCTCGT-TGTCGTTCAAGCGATTGTTCCA 232549 Query 16678 ATCTTTTAAATCTTTGGATATATCCACTTCTTCTGGCGTCCAAAAGCTAGCCACTGCCTT 16737 || | ||||| | ||| | ||| |||| |||||||| || |||| || Sbjct 232548 GTCATGAGTGTCTTTTCCCAAATCGATTTCCTCTGCAGTCCAAAAAGATGCTTCTGCTTT 232489 Query 16738 TTTATACATTTTCCAAATATCATTGTATTGTAT-GGGAAA 16776 || ||||||| |||||| || | ||||| || |||||| Sbjct 232488 CTTGTACATTTGCCAAATCTCGTGGTATTTAATAGGGAAA 232449 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 511414272146400