Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Wickerhamia_20fluorescens_20[genbank_20GCA_5F001599155.1_202016-03-
01] 20 sequences; 13,178,500 total letters
Query= NC_001266.1
Length=159857
Score E
Sequences producing significant alignments: (Bits) Value
seq1 105 7e-18
>seq1
Length=2974285
Score = 105 bits (116), Expect = 7e-18
Identities = 558/880 (63%), Gaps = 26/880 (3%)
Strand=Plus/Minus
Query 15912 TTTGGTAATCACTAACGCGTTTTTCGAAGAAGTTAGTTTTTCCCTCTAAAGATATATTTT 15971
||||||| |||||||| | |||||||| ||||| || ||||| | || || || ||||
Sbjct 233317 TTTGGTAGTCACTAACTCTCTTTTCGAAAAAGTTGGTCTTTCCTGCCAACGAAATGTTTT 233258
Query 15972 CCATAAAATCAAAGGGATTAGTAGC--TGAAAATATCTTAGAGTACCCCAGTTCCGTAAC 16029
||||||| ||||||||||||||| | || || | ||| || || | | | ||
Sbjct 233257 CCATAAAGTCAAAGGGATTAGTAACATTGTAA--ACCTTTTCGTTGCCTAATGCGACAAG 233200
Query 16030 TAATCTATCTGCTACAAATTCTATATATTGACACATTAAGTCGCAATTAATTCCTATAAG 16089
|||||| || || ||||| || | || || ||||| || | || || || || | |
Sbjct 233199 TAATCTGTCGGCAACAAACTCCACGTACTGGCACATCAATTTACAGTTCATACCCAACAA 233140
Query 16090 TCGTACCGGAAGAGCTTTTGTTAAAAATTGTTGTTCTATCACAACCGCTTCTTTAATGAT 16149
| || | ||| | || ||||| | | ||| || |||| || ||| | || ||
Sbjct 233139 CGAAATAGGCAAAGCATCAGTGAAAAACTCCTTTTCAATAGCAACGGCCTCTGTGATAAT 233080
Query 16150 ATCGGTGGCTCG--TGTTTCAG-ACGGTGTATGGTTT--AGGTGTTTAAACATTAGACAC 16204
| |||| | ||| | | || || ||| | ||| || | | ||
Sbjct 233079 CT-----TCTCGACAATAGCAGCATCGGGTCTGTTTTGCAAGTGGGAGAATAACAAGCAA 233025
Query 16205 GCGAAGTCGCAATGTAGTCCTTCGTCTCTGCTGATAAGTTCGTTGGAAAAAGTTAACCCT 16264
|| || ||| || | || || || | || ||| | |||||||| ||||| || ||
Sbjct 233024 GCAAAATCGGTGTGCAAACCCTCATCACGGCAGATTAACTCGTTGGAGAAAGTCAAACCA 232965
Query 16265 GGCATTTTTCCTCGTTTCTTTAACCAGAATATCGCAGCAAATGACCCCGAAAAGAATATA 16324
||||| |||| ||||| ||||| || || | ||||| || || ||||| |||
Sbjct 232964 GGCATCAAGCCTCTCTTCTTCAACCAAAAGATGGATGCAAACGATCCACTGAAGAAAATA 232905
Query 16325 CCCTCAACAGATGCAAAAGCGATTAATCGTTCCGCGTACGTAGCATCTTTATTACGAATC 16384
|| ||||||| ||||| || | | ||||| | | || || | || || |||
Sbjct 232904 CCTTCAACAGCAGCAAATGCAACAAGACGTTCGCCAAATAAGGCCTCGTCATCACTGATC 232845
Query 16385 CATTTCTGTA---CCCATTCGGCTTTTTGTTTTATACAATCCATCGTTTCTATGGCCTTA 16441
|| ||| |||| || || || | ||| || ||| || || || || || ||
Sbjct 232844 CA---GCGTAAAGCCCAGTCAGCCTTCTTTTTGATGCAAGGAATAGTCTCAATAGCATTG 232788
Query 16442 AACAATTTCTCTTTTTCCTGAATATCGATTATATACGTATCAATCAGTAAACTGTACATT 16501
|| || ||| |||| || | ||||| || || |||| || ||| |
Sbjct 232787 AATAAAAAGTCTGCCTCCTTGGGGTCCTTGATATAGGTGTCGATCAACAAGGAGTAGGTC 232728
Query 16502 TCTGAGTGTATGTTCTCTATGGCTATCTGAAATCCATAGAAGCATCGAGCCTCCGCTATT 16561
|||||||| || || || || || || || || || |||||| || || | ||
Sbjct 232727 TCTGAGTGGATATTTTCCATCATGATTTGGAAACCGTAAAAGCATTTGGCTTCTGGAATC 232668
Query 16562 TGTACTTCCACGTAAAATCGTTCCGCCAGGTTCTCATTCACGATACCGTCACTTGCAGCA 16621
|| || || | | || ||| ||| |||||| || || ||||| || |||||
Sbjct 232667 TGAACCTCGGCAGAGAAGTTCTCCACCAAGTTCTCGTTAACAATACCATCGGAAGCAGCG 232608
Query 16622 AAAAACGCCAATATGTGCTTAATGAAATATTTTTCGTCAGATGT--AA--GAATATGCCA 16677
||||| ||||| || | |||||| | |||| | || || || | | |||
Sbjct 232607 AAAAATGCCAAAATACGGGAAATGAAGAAACGCTCGT-TGTCGTTCAAGCGATTGTTCCA 232549
Query 16678 ATCTTTTAAATCTTTGGATATATCCACTTCTTCTGGCGTCCAAAAGCTAGCCACTGCCTT 16737
|| | ||||| | ||| | ||| |||| |||||||| || |||| ||
Sbjct 232548 GTCATGAGTGTCTTTTCCCAAATCGATTTCCTCTGCAGTCCAAAAAGATGCTTCTGCTTT 232489
Query 16738 TTTATACATTTTCCAAATATCATTGTATTGTAT-GGGAAA 16776
|| ||||||| |||||| || | ||||| || ||||||
Sbjct 232488 CTTGTACATTTGCCAAATCTCGTGGTATTTAATAGGGAAA 232449
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 511414272146400
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |