Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Wickerhamia_20fluorescens_20[genbank_20GCA_5F001599155.1_202016-03- 01] 20 sequences; 13,178,500 total letters Query= NC_001611.1 Length=185578 Score E Sequences producing significant alignments: (Bits) Value seq1 295 8e-75 seq5 116 4e-21 >seq1 Length=2974285 Score = 295 bits (326), Expect = 8e-75 Identities = 1450/2287 (63%), Gaps = 47/2287 (2%) Strand=Plus/Minus Query 52801 GTCCAATGTGAATTGAATGGGAGCGGATGCGGGTTTCGTACGTAGATAGTACATTCCCGT 52860 ||| | ||||||||| |||| ||| || || | | || | | |||||||| || || Sbjct 200897 GTCTACTGTGAATTGGATGGCAGCCGAGGCAGCCTGGGTTCTCAAGTAGTACATACCTGT 200838 Query 52861 TTTTAGACCGAGACTCCATCCGTAAAAATGCATACTTGTTAGTTTGGAATAACTCGGATC 52920 ||| || || |||| |||||||||||||| |||| ||| | ||||| Sbjct 200837 TTTGAGTCCCTTCTTCCAACCGTAAAAATGCATCGAGGTTAATTTACCCATTGTAGGATC 200778 Query 52921 TGCTATATGGATATTCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCCAT 52980 || ||||| |||| ||| || |||||| |||||||| | | |||||||||||| Sbjct 200777 CTTGATGTGGATGTTCAAAGACTGGGATTGATCAATGAAGGCGGCACGGTCTGCAGCCAT 200718 Query 52981 TTTTATGATCGTCTTT-TGTGGAATTTCCCAAATAGTTTTATA-AACTCGCTTAATATCT 53038 | || || || ||| || | |||||||| | || || || ||| | ||| | || Sbjct 200717 ATCAATAAT-GTGTTTCTGAGAGATTTCCCATACGGTCTTGTACAACGC-CTTGACTTCG 200660 Query 53039 TCTGGAAGGTTTGTATTC---TGAATAGATCCACCATCTACCATAATCCTATTCTTGATC 53095 || || | ||| | | || || || || | || || | ||||| || Sbjct 200659 TCAGGGATGTTGGGCAACAGCTGGATCGAACCGTTGTTGGAAATGATGTTGTTCTTCATG 200600 Query 53096 TCATCATTCCATAATTTTCTC---TCGGTTAAAACTCTAAGGAGATGCGGATTAACTACT 53152 || ||||| | | | | || | | | | | | || || || || | | Sbjct 200599 GAGTCGTTCCAGA---TACCCAAATCCACAAGATCGCGTAACAAATAAGGGTTGACAATT 200543 Query 53153 TGAAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCCACAGAC 53212 || ||||| |||| ||||||||| | | ||| ||||| || || ||||| | || Sbjct 200542 TGGAATTCACCAGCCAATACTCTTCTGGAGTAGATATTGGAAGTGTAGGGTTCAAAGCAC 200483 Query 53213 TCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAAACTA 53272 || || || ||||| ||||| | ||| ||||| || ||||| || || |||||||| | Sbjct 200482 TCGTTGTTACCCAATATTTGGGAAGTGGATGCCGTGGGCATGGGAGCAACCAATAACGAA 200423 Query 53273 TTTCTAAGACCGTATGTTCTG--ATTTTATCTTTTAGAGGTTCCCAATTCCAAAGATCCG 53330 ||||||| ||| ||| | | | ||| | |||| | ||||| | ||| | || Sbjct 200422 TTTCTAATACC--ATGCTTAGCCAATTTTTGCTTTAATGTGTCCCAGTCCCACAACTCAC 200365 Query 53331 ACGGTACAACNNNNNNNNNNNNNNNTTGTAGAATACCGTTACTGGCGTACGATCCTACAT 53390 || |||| | ||| || ||| || || | | Sbjct 200364 TGGGCTTTCTGTCCCAAAGATCAAACTGTAACAAACCCTTGGAGGCTGGAGACCCCTCGT 200305 Query 53391 ATGTATCGTATGGTCCTTCCTTCTCAGCTAGTTCACAACTCGCCTCTAATGCACCGTAAT 53450 | | ||||| | || || || || | ||| ||| || || | |||||||| | Sbjct 200304 AACTTTCGTAAGAACCCTCGACCTGCGCCAATTCGATACTGGCTTCCACTGCACCGTGGT 200245 Query 53451 AAATGGTTTCGAAGATCTTCTTATTTAGATCTTGTGCTTCCAGGCTATCAAATGGATAAT 53510 | ||||||||||| |||| |||| | ||| |||| | ||||| || | Sbjct 200244 ACATGGTTTCGAAAATCTGAATATTCAATTCTCTAGCTTGTTGCGAGTCAAAGGGCAATC 200185 Query 53511 TTAAGAGAATAAACGCGTCTGCTAATCCTTGAACACCAATACCGATAGGTCTATGTCTCT 53570 | || ||||| || ||||| || || || ||||| | | || ||||||| ||| Sbjct 200184 TCAATGCCATAAAAGCATCTGCCAAACCCTGCACACCCAATGCAATTGGTCTATTCCTCA 200125 Query 53571 TATTAGAGATTTCAGCTTCTGGAATAGGATAATAATTAATATCTATAATTTTATTGAGGT 53630 | ||||| ||| |||||||||| || ||| | ||| ||| || ||| | || | || Sbjct 200124 TGTTAGATCTTTTGGCTTCTGGAACGGGGTAAAAGTTACGATCAATGATTCTGTTCAAGT 200065 Query 53631 TTCTGACAATTACTTTGACCACATCCTTCAGTTTGAGAAAAT-------CAAATTGT--C 53681 | | | || || ||| || || | || || ||| | ||| |||| | Sbjct 200064 TACGGGTAACAACCTTGGTAACTTCATGAAGCTTCTCAAAGTTGTACCACAAGTTGTTGC 200005 Query 53682 CATCTATT---ACAAACATGTTCAATGCAATAGATGCCAGATTACAAACGGCTACCTCAT 53738 ||| || |||||| | | ||| |||||||||| ||||| || || ||||||| Sbjct 200004 TGTCTTTTTCAACAAACGAGGGAAGTGCGATAGATGCCAAGTTACATACAGCAACCTCAT 199945 Query 53739 TAGCATCCGCATATTGTATTATCTCAGTGCAAAGATTACTACACTTGATGGTTCCTAAAT 53798 | | |||| | || ||| || | ||| | | |||||| || || | Sbjct 199944 CTGGCGAGGAGTATTCGACAATTTCACAACACAAATTGGAAGATTTGATGACACCCAAGT 199885 Query 53799 TTTGTTGATTACTCTTTTTGTTACACGCATCCTTATAAAGAATGAATGGCGTACCAGTTT 53858 | | ||||||| | ||||| || || ||||| || || | |||||||| ||||| |||| Sbjct 199884 TCTTTTGATTAGTTTTTTTATTGCATGCATCTTTGTACAACATGAATGGGGTACCGGTTT 199825 Query 53859 CAATCTGGGATTCTATAATCGCTTTCCAGACGACACGAGCCTTTATTATAGATTTGTATC 53918 | | || | || | ||| || | ||| | ||||||| || | ||| | | Sbjct 199824 CGGTTTGCGCCTCCAAAATGGCGTACCATAATTTCTGAGCCTTGATAGTC--TTTCTTCC 199767 Query 53919 TC--TTTTCTCTTTCGTATAGTGTATACAATCGTTCAAACTCGTCTCCCCAAACATTGTC 53976 | ||||| | |||||| |||||| |||||||| || || |||||| | Sbjct 199766 ACGGTTTTCACGTTCGTACTTCTCGTACAATGCCTCAAACTCATCACCGTAAACATCGGA 199707 Query 53977 CAATCCAGGACATTCATCCGGACACATCAACGACCACTCTCCGTCATCCTTCACTCGTTT 54036 ||| || | |||| ||| | | ||| | |||||| | | | || |||| || Sbjct 199706 CAAACCTTGGGCCTCATTAGGAGAGAACAAGGTCCACTCAGCATTCTGCTCAACTCTCTT 199647 Query 54037 CATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATGTTCCTCGTT 54096 |||||| | ||||||||||| | ||| || | |||||| | || ||| || || Sbjct 199646 CATAAACAAGTCAGGAATCCACAATGCTGGGAACAAATCTCTTGCCCTCATTTCTTCCTT 199587 Query 54097 TCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTA 54156 || ||||||| ||| ||||| ||| | | ||||| | ||||| |||||||| || Sbjct 199586 ACCATGATTCTTTCTAATATCGATGAAATCAAAGATATCCGCGTGCCATGGTTCCAAATA 199527 Query 54157 TATGGTCATAACTCCAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATT 54216 || || | | || || | || || || |||||||| | ||| | ||| |||||||| Sbjct 199526 TAAGGCAAATGCACCGGGTCTCTTATTACCACCCTGATCCACGTAACGAGCAGTGTTATT 199467 Query 54217 ATAAACTCTCAACATTGGAATAATACCATTGGATGCACCATTGGTCCCGGAGATATAGCT 54276 ||||||| | ||| ||||| |||||||| || | ||| ||||| || | || ||| Sbjct 199466 GAAAACTCTAACCATAGGAATGATACCATTAGAGGTACCGTTGGTACCAGCAATGTAGGC 199407 Query 54277 TCCACTGGCACGAATATTACTAATTGATAGACCTATCCCCCCTGCCATTTTAGAGATTAA 54336 ||| | | ||||| || || || ||| || || || || | || || || || Sbjct 199406 ACCAGTCGAGCGAATGTTGTGTATGTGTAAACCAATACCTCCAGCACTCTTGGAAATCAA 199347 Query 54337 TGCGCATCGTTTTAACGTATCATAGATGCCCTCTATACTATCATCCATCATGTTAAGTAG 54396 || ||| || || |||||||| || || || ||| |||||| |||| || | Sbjct 199346 GGCACATGTCTTCAAGGTATCATAAATACCGTCAATAGAATCATCTTTCATAGCAATCAA 199287 Query 54397 AAAACAGCTAGACATTTG-GTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGT 54455 ||| || |||||||| | | | | || || |||||||| || ||||| || ||| Sbjct 199286 AAAGCACGAGGACATTTGAGGGTTGGGT-GTACCAGCATTAAACAAAGTAGGCGAGCCGT 199228 Query 54456 GCGTAAACCATTTTTCAGAAAGTAGATTGTACGTCTCGATAGCTGAGTCTATATCCCATT 54515 | ||||| | | | || | | |||||| || || || || | || || Sbjct 199227 GGGTAAAGTGTCTCTGGGACATCATATTGTAAGTTTCAATGACTCTGGGAATGTCGTCAC 199168 Query 54516 GATGAATTCCTACTGCGACACGCATTAACATGTGCTGAGGTCTTTCAACGATCTTGTTGT 54575 |||||| || | || || | ||| | | ||||||||||||||| ||| ||| | Sbjct 199167 CATGAATACCAATGGCAACTCTCATAATTAAGTGCTGAGGTCTTTCTGCGACTTTGCCAT 199108 Query 54576 TTATTTTCAGCAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGT 54635 | ||| | | | ||| ||| | || |||||||| |||||||| || ||||| ||| | Sbjct 199107 TAATTCTTAAAAGGTAAGATCTCTCTAAAGTTTTGAAACCAAAGTAATTGTAGTTAAAAT 199048 Query 54636 CTCGTTCGTAAATAATAACTGAGTTGAGTTTATCCTTATATTTGTTAACTACATC-CATG 54694 | || || | | ||| | |||| | | ||| || ||| ||| | || ||| Sbjct 199047 CACGATCAAATACAATTGCAGAGTCCAAGTCATCAGCGTACTTGGTAATAATGTCGTATG 198988 Query 54695 GTAATACT-TGAAATAATCGGAGAATGTTTCCCATTTTTAGGATTGACATAGTTAAATAA 54753 | | || || || || || || || ||| |||| || || ||||||| | | || Sbjct 198987 TT--TCCTGGGAGATCATAGGGGAGTGCAAACCAGTTTTGGGGTTAACATAGTCATACAA 198930 Query 54754 ATCCTT--CATCACTTCACTAAATAGtttttttGTTTCTTTGTGTAGATTTGATACGGCT 54811 ||||| | ||||| | ||| | ||| | |||| |||||| | || || || || Sbjct 198929 CTCCTTACTAACACTTGA--AAACTGCTTTGTAGTTTGTTTGTGCAAGTTAGAAACAGCA 198872 Query 54812 ATTCTAGCGGCTAGAATGGCATAATCCGGATGTTGTGTAGTACAAGT-GGCTGCTATTTC 54870 ||||| || || | || |||||||| || || ||||| || || || || | || Sbjct 198871 ATTCTTGCTGCCAAGATAGCATAATCTGGGTGGATAGTAGT-CATGTATGCGGCAGTCTC 198813 Query 54871 GGCTGTCAGAGTGTCCAATTCTACCGTTGTTACTCCATTATATATTCCTTGGATAACCTT 54930 |||| | | || | || | || || || || | || | ||| ||||| | Sbjct 198812 TGCTGCTAAGTTATCAAGCTCAATAGTGGTAACACCTTGGTACACACCTGAAATAACTCT 198753 Query 54931 CATAGCTATTTTAATAGGATCTATATGATCAGTGTTTAAGCCATAACATAAT-TTTCTAA 54989 || |||| | | ||| | |||| | || |||||||||||||||| | | || Sbjct 198752 TTGAGTGATTTGCACGGCATCAACGTGATTGGAGTCTAAGCCATAACATAATCTCTGTAC 198693 Query 54990 TACGAGATGTGATTTTATCAAACATGACATTTTCCTTGTATCCATTTCGTTTAATGACAA 55049 | | || || ||||||||||| |||| || ||| |||| || ||||| ||| Sbjct 198692 T-CTAGCAGTAATTTTATCAAAACGGACAGGCTCTTTGCGACCATGTCTTTTAACCACAT 198634 Query 55050 ACATTTT 55056 ||||||| Sbjct 198633 ACATTTT 198627 Score = 226 bits (250), Expect = 3e-54 Identities = 599/904 (66%), Gaps = 17/904 (2%) Strand=Plus/Minus Query 23823 TCTTGAGACATAACTCCCATTTTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTT 23882 |||| || |||||| || |||||||| |||| || | ||||||||||| || || Sbjct 233338 TCTT-AGCCATAACACCAGCCTTTTGGTAGTCACTAACTCTCTTTTCGAAAAAGTTGGTC 233280 Query 23883 TTACCTTCTAATGATATATTTTCCATGAAATCGGATGGATTGGTAACATTATAGATTCTT 23942 || ||| | || || || |||||||| || || | ||||| |||||||| || | ||| Sbjct 233279 TTTCCTGCCAACGAAATGTTTTCCATAAAGTCAAAGGGATTAGTAACATTGTAAAC-CTT 233221 Query 23943 TTAAATCCCAATTCAGA-AATCAATCTATCTGCGACAAACTCCATATATGTTTTCATCAT 24001 || | || | | || || ||||| || || |||||||||| || ||||| Sbjct 233220 TTCGTTGCCTAATGCGACAAGTAATCTGTCGGCAACAAACTCCACGTACTGGCACATCAA 233161 Query 24002 TTCACAATTCATTCCTATAAGTTTAACTGGAAGAGCCACAGTAAGAAATTCTTGTTCAAT 24061 || ||| ||||| || | | || || | ||| |||| | ||| || | |||||| Sbjct 233160 TTTACAGTTCATACCCAACAACGAAATAGGCAAAGCATCAGTGAAAAACTCCTTTTCAAT 233101 Query 24062 AGAGACCGCGTCTGTTATAATAGATCTT-ACTGTTTCTTCACTCGGTGGATACAATAAAT 24120 || || || ||||| ||||| ||| || | | || ||| | || | Sbjct 233100 AGCAACGGCCTCTGTGATAATCT-TCTCGACAATAGCAGCATCGGGTCTGTTTTGCAAGT 233042 Query 24121 GTTTAAACATCAAACATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGT 24180 | || | ||| || || |||||| ||| | |||||| || | | ||||| |||| Sbjct 233041 GGGAGAATAACAAGCAAGCAAAATCGGTGTGCAAACCCTCATCACGGCAGATTAACTCGT 232982 Query 24181 TGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATG 24240 |||| || || | || ||||| | ||| | ||| || | |||||| ||||| ||||| | Sbjct 232981 TGGAGAAAGTCAAACCAGGCATCAAGCCTCTCTTCTTCAACCAAAAGATGGATGCAAACG 232922 Query 24241 ATCCAGAAAAGAAAATTCCTTCTACTGCCGCAAAGGCAATAAGTCTTTCTCCATAACCGG 24300 ||||| |||||||| ||||| || || ||||| |||| ||| | ||| ||| | || Sbjct 232921 ATCCACTGAAGAAAATACCTTCAACAGCAGCAAATGCAACAAGACGTTCGCCAAATAAGG 232862 Query 24301 CGCTGTCATGT---ATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATTG 24357 | ||||| ||||| | |||||| || ||||||||||| | ||||| || | Sbjct 232861 CCTCGTCATCACTGATCCAGCGTAAAGCCCAGTCAGCCTTCTTTTTGATGCAAGGAATAG 232802 Query 24358 TCTCTATAGCATTAAAGAGATAGtttttttCATTACTATCTTTAACATATGTATCAATCA 24417 |||| |||||||| || | | ||| | || || || || | ||| || || |||| Sbjct 232801 TCTCAATAGCATTGAATAAAAAGTCTGCCTCCTTGGGGTCCTTGATATAGGTGTCGATCA 232742 Query 24418 AAAGACTATACATTTCCGAATGAATGTTTTCAATGGCCATTTGAAATCCGTAGAAACATC 24477 | | || | || || || || ||||| || ||||| || ||||| || ||| Sbjct 232741 ACAAGGAGTAGGTCTCTGAGTGGATATTTTCCATCATGATTTGGAAACCGTAAAAGCATT 232682 Query 24478 TAGCCTCGGTAATCTGTACTTCTATACAAAATCGTTCT--GCTAAATTTTCATTCACTAT 24535 | || || | |||||| || || | | || ||||| | || || || || || || Sbjct 232681 TGGCTTCTGGAATCTGAACCTCGGCAGAGAA--GTTCTCCACCAAGTTCTCGTTAACAAT 232624 Query 24536 TCCGTCACTGGCTGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTCTGGTGT 24595 || || || || ||||| ||||| | | | || || | |||| || || Sbjct 232623 ACCATCGGAAGCAGCGAAAAATGCCAAAATACGGGAAATGAAGAAACGCTCGT-TGTCGT 232565 Query 24596 T----AGTTTATTCCAATCATTGATATCTTTAGATATATCCACTTCTTCCACTGTCCAAA 24651 | | || ||||| |||| | ||||| | ||| | ||| || | ||||||| Sbjct 232564 TCAAGCGATTGTTCCAGTCATGAGTGTCTTTTCCCAAATCGATTTCCTCTGCAGTCCAAA 232505 Query 24652 ATGATGCCTCTGCCTTTTTATACATATTCCAGATGTCATGATATTGAATTGGAAAAATAA 24711 | ||||| ||||| || || ||||| | ||| || || || |||| ||| || |||| || Sbjct 232504 AAGATGCTTCTGCTTTCTTGTACATTTGCCAAATCTCGTGGTATTTAATAGGGAAAAGAA 232445 Query 24712 CAAA 24715 |||| Sbjct 232444 CAAA 232441 >seq5 Length=1501106 Score = 116 bits (128), Expect = 4e-21 Identities = 354/541 (65%), Gaps = 6/541 (1%) Strand=Plus/Minus Query 53781 ACTTGATGGTTCCTAAATTTTGTTGATTACTCTTTTTGTTACACGCATCCTTATAAAGAA 53840 |||| || || |||| ||||| || || ||| |||||| ||||| ||||| | | Sbjct 762059 ACTTAATTGTCCCTAGATTTTTCTGGTTTGATTTTGAGTTACATGCATCTTTATATAACA 762000 Query 53841 TGAATGGCGTACCAGTTTCAATCTGGGATTCTATAATCGCTTTCCAGACGACACGAGCCT 53900 || | ||| || ||||| | |||||||||| ||| ||| ||| | | |||| Sbjct 761999 TGTACGGCCCTCCTGTTTCTGTTTGGGATTCTAAAATGGCTAGCCATAATTTCTGCGCCT 761940 Query 53901 TTATTATAGATTTGTATCTCTTTTCTCTTTCGTATAGT--GTATACAATCGTTCAAACTC 53958 | ||| || |||| || ||| || || | ||||| | | | |||| || Sbjct 761939 TAATTGTAACTTTGGCTCGACCTTCAGACTCATAGGATTCGTATA-ACTTGA-CAAAGTC 761882 Query 53959 GTCTCCCCAAACATTGTCCAATCCAGGACATTCATCCGGACACATCAACGACCACTCTCC 54018 ||||| || || |||||| |||||| |||||| || | | ||| ||||| ||| Sbjct 761881 ATCTCCGTAACAATCGTCCAACCCAGGAGCTTCATCTGGTGAAAACAATGACCATTCTAG 761822 Query 54019 GTCATCCTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCT 54078 | | ||| |||| ||||| || | ||| | ||||| || | ||||| |||||| Sbjct 761821 ATTTTGCTTAACTCTCTTCATGAATAAATCGGATATCCATAGTCCATAAAATAAATCTCT 761762 Query 54079 GGTTCTATGTTCCTCGTTTCCTGT-ATTCTTTTTAAGATCGAGGAACGCCATAATATCAG 54137 ||||| || || |||| | || ||| || || | || ||| | | | |||||| Sbjct 761761 GGTTC-GCATTTCTTGTTTGCCGTGATTTTTCTTTAAATTGAGTACATCGAATATATCAC 761703 Query 54138 AATGCCACGGTTCCAAGTATATGGTCATAACTCCAGGCCGTTTGTTTCCTCCCTGATCTA 54197 ||||||| || || | ||||| | | | | || || | | ||||| ||||| | Sbjct 761702 AATGCCATGGCTCAATGTATACTGCAAAAGCACCTGGTCTCCGACTACCTCCTTGATCAA 761643 Query 54198 TGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCATTGGATGCACCAT 54257 ||||| || || | ||| | |||| |||||| ||||| || ||| | |||| |||| Sbjct 761642 CATATCTTGCAGTTTCATTGAATACTCGCAACATGGGAATTATTCCAGTTGATGTTCCAT 761583 Query 54258 TGGTCCCGGAGATATAGCTTCCACTGGCACGAATATTACTAATTGATAGACCTATCCCCC 54317 | | | | ||| ||| |||| | | |||| |||| ||| || ||||| || | Sbjct 761582 TTGAGCTAGCGATGTAGGATCCATTACCCCGAACATTATGAATATGTAAGCCTATTCCAC 761523 Query 54318 C 54318 | Sbjct 761522 C 761522 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 593721451569600