Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Wickerhamia_20fluorescens_20[genbank_20GCA_5F001599155.1_202016-03-
01] 20 sequences; 13,178,500 total letters
Query= NC_001973.1
Length=161046
Score E
Sequences producing significant alignments: (Bits) Value
seq1 176 5e-39
seq7 95.1 1e-14
>seq1
Length=2974285
Score = 176 bits (194), Expect = 5e-39
Identities = 414/619 (67%), Gaps = 17/619 (3%)
Strand=Plus/Plus
Query 116591 GAGAACCCCCGCCGGTTCGTGATTTTCCCCATACAATACCCGGACATGTGGCGCATGTAC 116650
|||||| | || || || || ||||||| || |||||| || || |||| ||||||
Sbjct 232426 GAGAACACTCGTCGTTTTGTTCTTTTCCCTATTAAATACCACGAGATTTGGCAAATGTAC 232485
Query 116651 AAAAAGGCCGAGGCGTCGTTCTGGACCGTCGAGGAGGTGGACCTGTCCAAGGACACGAGC 116710
|| || || || || || || ||||| | ||||| | || || || |||||
Sbjct 232486 AAGAAAGCAGAAGCATCTTTTTGGACTGCAGAGGAAATCGATTTGGGAAAAGACACTCAT 232545
Query 116711 GACTGGGAG---CGCTTGAACGACAACGAGCGCCATTTCATCA-AGCACG--TGCTGGCC 116764
|||||| | |||||||||||||||||||| |||| ||| | || | ||||
Sbjct 232546 GACTGGAACAATCGCTTGAACGACAACGAGCG---TTTCTTCATTTCCCGTATTTTGGCA 232602
Query 116765 TTTTTCGCCGCCAGCGACGGCATCGTCAACGAGAATCTGGTCGAGCGTTTCGCTCAGGAG 116824
|||||||| || ||| || || || |||||||| |||| ||| ||| || |||
Sbjct 232603 TTTTTCGCTGCTTCCGATGGTATTGTTAACGAGAACTTGGTGGAGAACTTCTCTGCCGAG 232662
Query 116825 GTGCAGGTGGCCGAGGCGCGGTGCTTCTACGGCTTTCAGATCGCCATGGAGAACGTGCAC 116884
|| ||| | | || || ||||| ||||| || || ||| ||||| || | |||
Sbjct 232663 GTTCAGATTCCAGAAGCCAAATGCTTTTACGGTTTCCAAATCATGATGGAAAATATCCAC 232722
Query 116885 TCGGAAATGTATTCGACCCTCATCGACACGTA---CGTGCGCTCTTCGGAGG-AGAAGCT 116940
|| || | || || | |||||||| || | | | | ||||| |||
Sbjct 232723 TCAGAGACCTACTCCTTGTTGATCGACACCTATATCAAGGACCCCAAGGAGGCAGA---- 232778
Query 116941 CCGTTTGTTGAACGCCATCGAGACGATGCCGTGCGTCAAAGAGAAGGCCGAGTGGGCGCT 117000
| ||| || || || || ||||| || || ||| ||||| ||||||| || ||||| |
Sbjct 232779 CTTTTTATTCAATGCTATTGAGACTATTCCTTGCATCAAAAAGAAGGCTGACTGGGCTTT 232838
Query 117001 GCGCTGGATCGCCGGCAGAGAGGCCGCCTTCGGCGAGCGCCTGGTGGCCTTCGCGGCCGT 117060
||||||||| | |||||| || ||||| || || || || || || || ||
Sbjct 232839 ACGCTGGATCAGTGATGACGAGGCCTTATTTGGCGAACGTCTTGTTGCATTTGCTGCTGT 232898
Query 117061 CGAGGGCGTCTTCTTTTCGGGCAGTTTCGCCGCCATATTTTGGCTCAAGAAACGCGGCCT 117120
|| || | ||||| || || || |||| |||||| | ||||| | ||| |
Sbjct 232899 TGAAGGTATTTTCTTCAGTGGATCGTTTGCATCCATCTTTTGGTTGAAGAAGAGAGGCTT 232958
Query 117121 CATGCCCGGCCTGACTTTCAGCAACGAGCTCATCTCCAGGGACGAGGGTCTGCATTGCGA 117180
||||| || |||||||| ||||||| | |||| | | || |||||| |||| |||
Sbjct 232959 GATGCCTGGTTTGACTTTCTCCAACGAGTTAATCTGCCGTGATGAGGGTTTGCACACCGA 233018
Query 117181 CTTTGCCTGTTTGCTGTTC 117199
||||| || ||| | |||
Sbjct 233019 TTTTGCTTGCTTGTTATTC 233037
>seq7
Length=860703
Score = 95.1 bits (104), Expect = 1e-14
Identities = 159/230 (69%), Gaps = 0/230 (0%)
Strand=Plus/Plus
Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749
|||||||| ||||| || || | || || || || |||||| | || || || | ||
Sbjct 37633 ATGCAAATTTTCGTCAAGACCTTAACCGGTAAGACTATCACCCTTGAGGTGGAGTCTTCC 37692
Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809
|||| | | | | ||||| || |||| ||||| || || || ||| | ||||||
Sbjct 37693 GACACCATTGACAATGTCAAGTCCAAGATTCAGGACAAGGAAGGTATTCCCCCTGACCAG 37752
Query 40810 CAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 40869
||| || | || | || || || || |||| |||| || || || |||||||||
Sbjct 37753 CAAAGATTGATTTTTGCTGGTAAGCAATTGGAGGACGGCCGTACTCTTTCTGACTACAAC 37812
Query 40870 ATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGGCGG 40919
||||| |||||| | || || || | |||||| | ||||| || || ||
Sbjct 37813 ATCCAAAAGGAGTCTACTCTTCACTTGGTGTTGAGATTGAGAGGTGGTGG 37862
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 515219071195200
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |