Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Wickerhamia_20fluorescens_20[genbank_20GCA_5F001599155.1_202016-03- 01] 20 sequences; 13,178,500 total letters Query= NC_001973.1 Length=161046 Score E Sequences producing significant alignments: (Bits) Value seq1 176 5e-39 seq7 95.1 1e-14 >seq1 Length=2974285 Score = 176 bits (194), Expect = 5e-39 Identities = 414/619 (67%), Gaps = 17/619 (3%) Strand=Plus/Plus Query 116591 GAGAACCCCCGCCGGTTCGTGATTTTCCCCATACAATACCCGGACATGTGGCGCATGTAC 116650 |||||| | || || || || ||||||| || |||||| || || |||| |||||| Sbjct 232426 GAGAACACTCGTCGTTTTGTTCTTTTCCCTATTAAATACCACGAGATTTGGCAAATGTAC 232485 Query 116651 AAAAAGGCCGAGGCGTCGTTCTGGACCGTCGAGGAGGTGGACCTGTCCAAGGACACGAGC 116710 || || || || || || || ||||| | ||||| | || || || ||||| Sbjct 232486 AAGAAAGCAGAAGCATCTTTTTGGACTGCAGAGGAAATCGATTTGGGAAAAGACACTCAT 232545 Query 116711 GACTGGGAG---CGCTTGAACGACAACGAGCGCCATTTCATCA-AGCACG--TGCTGGCC 116764 |||||| | |||||||||||||||||||| |||| ||| | || | |||| Sbjct 232546 GACTGGAACAATCGCTTGAACGACAACGAGCG---TTTCTTCATTTCCCGTATTTTGGCA 232602 Query 116765 TTTTTCGCCGCCAGCGACGGCATCGTCAACGAGAATCTGGTCGAGCGTTTCGCTCAGGAG 116824 |||||||| || ||| || || || |||||||| |||| ||| ||| || ||| Sbjct 232603 TTTTTCGCTGCTTCCGATGGTATTGTTAACGAGAACTTGGTGGAGAACTTCTCTGCCGAG 232662 Query 116825 GTGCAGGTGGCCGAGGCGCGGTGCTTCTACGGCTTTCAGATCGCCATGGAGAACGTGCAC 116884 || ||| | | || || ||||| ||||| || || ||| ||||| || | ||| Sbjct 232663 GTTCAGATTCCAGAAGCCAAATGCTTTTACGGTTTCCAAATCATGATGGAAAATATCCAC 232722 Query 116885 TCGGAAATGTATTCGACCCTCATCGACACGTA---CGTGCGCTCTTCGGAGG-AGAAGCT 116940 || || | || || | |||||||| || | | | | ||||| ||| Sbjct 232723 TCAGAGACCTACTCCTTGTTGATCGACACCTATATCAAGGACCCCAAGGAGGCAGA---- 232778 Query 116941 CCGTTTGTTGAACGCCATCGAGACGATGCCGTGCGTCAAAGAGAAGGCCGAGTGGGCGCT 117000 | ||| || || || || ||||| || || ||| ||||| ||||||| || ||||| | Sbjct 232779 CTTTTTATTCAATGCTATTGAGACTATTCCTTGCATCAAAAAGAAGGCTGACTGGGCTTT 232838 Query 117001 GCGCTGGATCGCCGGCAGAGAGGCCGCCTTCGGCGAGCGCCTGGTGGCCTTCGCGGCCGT 117060 ||||||||| | |||||| || ||||| || || || || || || || || Sbjct 232839 ACGCTGGATCAGTGATGACGAGGCCTTATTTGGCGAACGTCTTGTTGCATTTGCTGCTGT 232898 Query 117061 CGAGGGCGTCTTCTTTTCGGGCAGTTTCGCCGCCATATTTTGGCTCAAGAAACGCGGCCT 117120 || || | ||||| || || || |||| |||||| | ||||| | ||| | Sbjct 232899 TGAAGGTATTTTCTTCAGTGGATCGTTTGCATCCATCTTTTGGTTGAAGAAGAGAGGCTT 232958 Query 117121 CATGCCCGGCCTGACTTTCAGCAACGAGCTCATCTCCAGGGACGAGGGTCTGCATTGCGA 117180 ||||| || |||||||| ||||||| | |||| | | || |||||| |||| ||| Sbjct 232959 GATGCCTGGTTTGACTTTCTCCAACGAGTTAATCTGCCGTGATGAGGGTTTGCACACCGA 233018 Query 117181 CTTTGCCTGTTTGCTGTTC 117199 ||||| || ||| | ||| Sbjct 233019 TTTTGCTTGCTTGTTATTC 233037 >seq7 Length=860703 Score = 95.1 bits (104), Expect = 1e-14 Identities = 159/230 (69%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 |||||||| ||||| || || | || || || || |||||| | || || || | || Sbjct 37633 ATGCAAATTTTCGTCAAGACCTTAACCGGTAAGACTATCACCCTTGAGGTGGAGTCTTCC 37692 Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809 |||| | | | | ||||| || |||| ||||| || || || ||| | |||||| Sbjct 37693 GACACCATTGACAATGTCAAGTCCAAGATTCAGGACAAGGAAGGTATTCCCCCTGACCAG 37752 Query 40810 CAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 40869 ||| || | || | || || || || |||| |||| || || || ||||||||| Sbjct 37753 CAAAGATTGATTTTTGCTGGTAAGCAATTGGAGGACGGCCGTACTCTTTCTGACTACAAC 37812 Query 40870 ATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGGCGG 40919 ||||| |||||| | || || || | |||||| | ||||| || || || Sbjct 37813 ATCCAAAAGGAGTCTACTCTTCACTTGGTGTTGAGATTGAGAGGTGGTGG 37862 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 515219071195200