Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Wickerhamia_20fluorescens_20[genbank_20GCA_5F001599155.1_202016-03-
01] 20 sequences; 13,178,500 total letters
Query= NC_001993.1
Length=236120
Score E
Sequences producing significant alignments: (Bits) Value
seq1 109 8e-19
>seq1
Length=2974285
Score = 109 bits (120), Expect = 8e-19
Identities = 164/233 (70%), Gaps = 0/233 (0%)
Strand=Plus/Minus
Query 124536 ACAATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCA 124595
||||||||||| ||| ||||||| | || || |||||||| || | ||| ||||| |
Sbjct 1361504 ACAATGCAAATCTTTGTAAAGACCTTGACTGGAAAAACTATTACCCTTGAGGTTGAATCC 1361445
Query 124596 AATGATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGAT 124655
||| || ||| || | || || ||||| || || || ||||| ||||| ||
Sbjct 1361444 TCTGACACTATTGACAACGTCAAGTCCAAGATTCAGGACAAGGAGGGTATTCCACCAGAC 1361385
Query 124656 CAACAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTAT 124715
|| || || | ||||| || || || |||||||| ||| | |||| ||| ||| ||
Sbjct 1361384 CAGCAGAGATTGATTTTCGCTGGTAAGCAATTAGAAGATGGCAGAACGTTATCAGACTAC 1361325
Query 124716 AATATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTAT 124768
|||||||| || || || || | ||| | || || | || ||||||||||
Sbjct 1361324 AATATTCAGAAGGAGTCTACACTTCATCTTGTATTGAGATTGAGAGGTGGTAT 1361272
Score = 107 bits (118), Expect = 3e-18
Identities = 183/263 (70%), Gaps = 2/263 (1%)
Strand=Plus/Minus
Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAAT 124598
|||||||| ||| | ||||| | || || |||||||| || | ||| ||||| | |
Sbjct 1360817 ATGCAAATCTTTGTCAAGACCTTGACTGGAAAAACTATTACCCTTGAGGTTGAATCCTCT 1360758
Query 124599 GATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCAA 124658
|| || ||| || | || || ||||| || || || ||||| ||||| || ||
Sbjct 1360757 GACACTATTGACAAMGTCAAGTCCAAGATTCAGGACAAGGAGGGTATTCCACCAGACCAG 1360698
Query 124659 CAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAAT 124718
|| || | ||||| || || || |||||||| ||| | |||| ||| ||| || |||
Sbjct 1360697 CAGAGATTGATTTTCGCTGGTAAGCAATTAGAAGATGGAAGAACGTTATCAGACTACAAT 1360638
Query 124719 ATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTATTAAAAATTCA 124778
|||||||| || || || | ||| | || || | || |||||||||| || || |
Sbjct 1360637 ATTCAAAAGGAGTCTACGCTTCATCTTGTATTGAGATTGAGAGGTGGTATGTAAGATGC- 1360579
Query 124779 TAAAAATTGATTGT-AAATAAAT 124800
|||| | || || ||||||||
Sbjct 1360578 TAAAGCTATATAGTCAAATAAAT 1360556
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 755455811136000
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |