Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Wickerhamia_20fluorescens_20[genbank_20GCA_5F001599155.1_202016-03- 01] 20 sequences; 13,178,500 total letters Query= NC_001993.1 Length=236120 Score E Sequences producing significant alignments: (Bits) Value seq1 109 8e-19 >seq1 Length=2974285 Score = 109 bits (120), Expect = 8e-19 Identities = 164/233 (70%), Gaps = 0/233 (0%) Strand=Plus/Minus Query 124536 ACAATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCA 124595 ||||||||||| ||| ||||||| | || || |||||||| || | ||| ||||| | Sbjct 1361504 ACAATGCAAATCTTTGTAAAGACCTTGACTGGAAAAACTATTACCCTTGAGGTTGAATCC 1361445 Query 124596 AATGATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGAT 124655 ||| || ||| || | || || ||||| || || || ||||| ||||| || Sbjct 1361444 TCTGACACTATTGACAACGTCAAGTCCAAGATTCAGGACAAGGAGGGTATTCCACCAGAC 1361385 Query 124656 CAACAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTAT 124715 || || || | ||||| || || || |||||||| ||| | |||| ||| ||| || Sbjct 1361384 CAGCAGAGATTGATTTTCGCTGGTAAGCAATTAGAAGATGGCAGAACGTTATCAGACTAC 1361325 Query 124716 AATATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTAT 124768 |||||||| || || || || | ||| | || || | || |||||||||| Sbjct 1361324 AATATTCAGAAGGAGTCTACACTTCATCTTGTATTGAGATTGAGAGGTGGTAT 1361272 Score = 107 bits (118), Expect = 3e-18 Identities = 183/263 (70%), Gaps = 2/263 (1%) Strand=Plus/Minus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAAT 124598 |||||||| ||| | ||||| | || || |||||||| || | ||| ||||| | | Sbjct 1360817 ATGCAAATCTTTGTCAAGACCTTGACTGGAAAAACTATTACCCTTGAGGTTGAATCCTCT 1360758 Query 124599 GATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCAA 124658 || || ||| || | || || ||||| || || || ||||| ||||| || || Sbjct 1360757 GACACTATTGACAAMGTCAAGTCCAAGATTCAGGACAAGGAGGGTATTCCACCAGACCAG 1360698 Query 124659 CAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAAT 124718 || || | ||||| || || || |||||||| ||| | |||| ||| ||| || ||| Sbjct 1360697 CAGAGATTGATTTTCGCTGGTAAGCAATTAGAAGATGGAAGAACGTTATCAGACTACAAT 1360638 Query 124719 ATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTATTAAAAATTCA 124778 |||||||| || || || | ||| | || || | || |||||||||| || || | Sbjct 1360637 ATTCAAAAGGAGTCTACGCTTCATCTTGTATTGAGATTGAGAGGTGGTATGTAAGATGC- 1360579 Query 124779 TAAAAATTGATTGT-AAATAAAT 124800 |||| | || || |||||||| Sbjct 1360578 TAAAGCTATATAGTCAAATAAAT 1360556 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 755455811136000