Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Wickerhamia_20fluorescens_20[genbank_20GCA_5F001599155.1_202016-03- 01] 20 sequences; 13,178,500 total letters Query= NC_002331.1 Length=178733 Score E Sequences producing significant alignments: (Bits) Value seq1 104 3e-17 seq7 98.7 1e-15 >seq1 Length=2974285 Score = 104 bits (114), Expect = 3e-17 Identities = 164/230 (71%), Gaps = 4/230 (2%) Strand=Plus/Plus Query 42957 CCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCC 43016 || ||||| || | ||| || | ||| | ||| |||||| ||||||||||| || | Sbjct 1361275 CCACCTCTCAATCTCAATACAAGATGAAGTGTAGACTCCTTCTGAATATTGTAGTCTGAT 1361334 Query 43017 AGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGC 43076 | || | | || |||| |||||||||||||| || | || ||||||||| | || Sbjct 1361335 AACGTTCTGCCATCTTCTAATTGCTTACCAGCGAAAATCAATCTCTGCTGGTCTGGTGGA 1361394 Query 43077 ACGCTCTCCTTGTCCATGATTTTTTG-TTTGAGCGTCG-CCACCGTGTCGCTCGATTCCA 43134 | | |||||||||| ||| | || | |||| ||| | | | ||||| ||||| | Sbjct 1361395 ATACCCTCCTTGTCC-TGAATCTTGGACTTGA-CGTTGTCAATAGTGTCAGAGGATTCAA 1361452 Query 43135 CATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCATT 43184 | || | || || ||||| || || | ||||||||||||||||||||| Sbjct 1361453 CCTCAAGGGTAATAGTTTTTCCAGTCAAGGTCTTTACAAAGATTTGCATT 1361502 Score = 95.1 bits (104), Expect = 1e-14 Identities = 161/229 (70%), Gaps = 4/229 (2%) Strand=Plus/Plus Query 42957 CCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCC 43016 || ||||| || | ||| || | ||| | || |||||||||||||||||| || | Sbjct 1360591 CCACCTCTCAATCTCAATACAAGATGAAGCGTAGACTCCTTTTGAATATTGTAGTCTGAT 1360650 Query 43017 AGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGC 43076 | || | | || |||| |||||||||||||| || | || ||||||||| | || Sbjct 1360651 AACGTTCTTCCATCTTCTAATTGCTTACCAGCGAAAATCAATCTCTGCTGGTCTGGTGGA 1360710 Query 43077 ACGCTCTCCTTGTCCATGATTTTTTG-TTTGAGCGTCG-CCACCGTGTCGCTCGATTCCA 43134 | | |||||||||| ||| | || | |||| | | | | | ||||| ||||| | Sbjct 1360711 ATACCCTCCTTGTCC-TGAATCTTGGACTTGA-CKTTGTCAATAGTGTCAGAGGATTCAA 1360768 Query 43135 CATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 43183 | || | || || ||||| || || | ||||| |||||||||||||| Sbjct 1360769 CCTCAAGGGTAATAGTTTTTCCAGTCAAGGTCTTGACAAAGATTTGCAT 1360817 Score = 95.1 bits (104), Expect = 1e-14 Identities = 161/229 (70%), Gaps = 4/229 (2%) Strand=Plus/Plus Query 42957 CCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCC 43016 || ||||| || | ||| || | ||| | ||| |||||| ||||||||||| || | Sbjct 1360819 CCACCTCTCAATCTCAATACAAGATGAAGTGTAGACTCCTTCTGAATATTGTAGTCTGAT 1360878 Query 43017 AGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGC 43076 | || | | || |||| |||||||||||||| || | || ||||||||| | || Sbjct 1360879 AACGTTCTGCCATCTTCTAATTGCTTACCAGCGAAAATCAATCTCTGCTGGTCTGGTGGA 1360938 Query 43077 ACGCTCTCCTTGTCCATGATTTTTTG-TTTGAGCGTCG-CCACCGTGTCGCTCGATTCCA 43134 | | |||||||||| ||| | || | |||| | | | | | ||||| ||||| | Sbjct 1360939 ATACCCTCCTTGTCC-TGAATCTTGGACTTGA-CRTTGTCAATAGTGTCAGAGGATTCAA 1360996 Query 43135 CATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 43183 | || | || || ||||| || || | ||||| |||||||||||||| Sbjct 1360997 CCTCAAGGGTAATAGTTTTTCCAGTCAAGGTCTTGACAAAGATTTGCAT 1361045 Score = 95.1 bits (104), Expect = 1e-14 Identities = 161/229 (70%), Gaps = 4/229 (2%) Strand=Plus/Plus Query 42957 CCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCC 43016 || ||||| || | ||| || | ||| | ||| |||||| ||||||||||| || | Sbjct 1361047 CCACCTCTCAATCTCAATACAAGATGAAGTGTAGACTCCTTCTGAATATTGTAGTCTGAT 1361106 Query 43017 AGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGC 43076 | || | | || |||| |||||||||||||| || | || ||||||||| | || Sbjct 1361107 AACGTTCTGCCATCTTCTAATTGCTTACCAGCGAAAATCAATCTCTGCTGGTCTGGTGGA 1361166 Query 43077 ACGCTCTCCTTGTCCATGATTTTTTG-TTTGAGCGTCG-CCACCGTGTCGCTCGATTCCA 43134 | | |||||||||| ||| | || | |||| | | | | | ||||| ||||| | Sbjct 1361167 ATACCCTCCTTGTCC-TGAATCTTGGACTTGA-CRTTGTCAATAGTGTCAGAGGATTCAA 1361224 Query 43135 CATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 43183 | || | || || ||||| || || | ||||| |||||||||||||| Sbjct 1361225 CCTCAAGGGTAATAGTTTTTCCAGTCAAGGTCTTGACAAAGATTTGCAT 1361273 >seq7 Length=860703 Score = 98.7 bits (108), Expect = 1e-15 Identities = 160/228 (70%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 42957 CCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCC 43016 || ||||| || | ||||||||| || | || ||||||||| || ||||| |||| Sbjct 37859 CCACCTCTCAATCTCAACACCAAGTGAAGAGTAGACTCCTTTTGGATGTTGTAGTCAGAA 37800 Query 43017 AGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGC 43076 ||||| || |||| || | ||||||||||| || || | || |||||||| | || Sbjct 37799 AGAGTACGGCCGTCCTCCAATTGCTTACCAGCAAAAATCAATCTTTGCTGGTCAGGGGGA 37740 Query 43077 ACGCTCTCCTTGTCCATGATTTTTTG-TTTGAGCGTCGCCACCGTGTCGCTCGATTCCAC 43135 | | ||||||||| ||| | || | |||| | | | |||||| || ||||| Sbjct 37739 ATACCTTCCTTGTCC-TGAATCTTGGACTTGACATTGTCAATGGTGTCGGAAGACTCCAC 37681 Query 43136 ATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 43183 || | ||||| || || || |||| ||||| || || |||||||| Sbjct 37680 CTCAAGGGTGATAGTCTTACCGGTTAAGGTCTTGACGAAAATTTGCAT 37633 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 571817457045600