Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Wickerhamia_20fluorescens_20[genbank_20GCA_5F001599155.1_202016-03- 01] 20 sequences; 13,178,500 total letters Query= NC_002642.1 Length=144575 Score E Sequences producing significant alignments: (Bits) Value seq1 210 2e-49 >seq1 Length=2974285 Score = 210 bits (232), Expect = 2e-49 Identities = 589/889 (66%), Gaps = 29/889 (3%) Strand=Plus/Minus Query 15944 TTTTGATATTCACTAACTCTCTTTTCAAAGAAATTTGTTTTTCCTTCTAATGAAATATTT 16003 ||||| || ||||||||||||||||| || || || || |||||| | || ||||| ||| Sbjct 233318 TTTTGGTAGTCACTAACTCTCTTTTCGAAAAAGTTGGTCTTTCCTGCCAACGAAATGTTT 233259 Query 16004 TCCATAAAATCAAAAGGATTTTTTGAACAATAGTA---TTTATCGCATCCCAATTCCAAC 16060 |||||||| ||||| ||||| | ||| || ||| || ||| || ||| | | Sbjct 233258 TCCATAAAGTCAAAGGGATTAGT--AAC-ATTGTAAACCTTTTCGTTGCCTAATGCGACA 233202 Query 16061 AATAATCTATCCGCCACAAATTCTATATACTGTTTCATTAAATCACAGTTCATTCCTATT 16120 | |||||| || || ||||| || | ||||| ||| || | ||||||||| || | Sbjct 233201 AGTAATCTGTCGGCAACAAACTCCACGTACTGGCACATCAATTTACAGTTCATACCCAAC 233142 Query 16121 AATTTAACAGGGATTGCTTCTGTTAAAAAAtttttttCTATATTAACCGCTTCAATGATT 16180 || || ||| | || || || ||||| | ||||| ||| ||| || || |||| Sbjct 233141 AACGAAATAGGCAAAGCATCAGTGAAAAACTCCTTTTCAATAGCAACGGCCTCTGTGATA 233082 Query 16181 ATATCTCTTACTACACTA--TTTAAC-GGAGGGTTTAATAAGTGTTTAAACATTATACAA 16237 || | ||| | ||| || | | || |||| ||||| || | | ||| Sbjct 233081 ATCT-TCT--CGACAATAGCAGCATCGGGTCTGTTTTGCAAGTGGGAGAATAACAAGCAA 233025 Query 16238 GCAAAATCACAATGCAATCCTTCGTCCCTACTTATTAACTCGTTTGAAAATGTAAGACCT 16297 |||||||| ||||| || || || | | ||||||||||| || || || | ||| Sbjct 233024 GCAAAATCGGTGTGCAAACCCTCATCACGGCAGATTAACTCGTTGGAGAAAGTCAAACCA 232965 Query 16298 GGCATTAGTCCTCGTTTTTTAATCCAAAATATAGCGGCAAATGAACCAGAAAAGAATATA 16357 ||||| | |||| || || | |||||| || | ||||| || ||| ||||| ||| Sbjct 232964 GGCATCAAGCCTCTCTTCTTCAACCAAAAGATGGATGCAAACGATCCACTGAAGAAAATA 232905 Query 16358 CCTTCAACTGCGGCAAATGCAACCAATCGCTCACC--GTACGTTCT-Atttttactttct 16414 |||||||| || ||||||||||| | || || || || | || | | ||| Sbjct 232904 CCTTCAACAGCAGCAAATGCAACAAGACGTTCGCCAAATAAGGCCTCGTCATCACT---G 232848 Query 16415 atccattttttagcccaatttgctttttgtttAACACAGTTCATGTTCTCTATTGCATTA 16474 ||||| | |||||| | || || | ||| | || || |||| || ||||| Sbjct 232847 ATCCAGCGTAAAGCCCAGTCAGCCTTCTTTTTGATGCAAGGAATAGTCTCAATAGCATTG 232788 Query 16475 AATAAATAAtttttttCTTTGCTATCTAAAATATAAGTATCTATTAGTAAACTATACATT 16534 |||||| | | | || ||| || ||||| || || || | || || | Sbjct 232787 AATAAAAAGTCTGCCTCCTTGGGGTCCTTGATATAGGTGTCGATCAACAAGGAGTAGGTC 232728 Query 16535 TCTGAATGAATATTCTCCATTGCTATCTGAAAACCATAAAAGCATCTAGCTTCGGATATT 16594 ||||| || ||||| ||||| || || ||||| ||||||||| | ||||| | || Sbjct 232727 TCTGAGTGGATATTTTCCATCATGATTTGGAAACCGTAAAAGCATTTGGCTTCTGGAATC 232668 Query 16595 TGTACTTCAGAGTAAAACCTTTCTGCTAAGTTTTCGTTAACTATTCCATCGCTAGCTGCA 16654 || || || | | || | || | ||||| |||||||| || |||||| ||| || Sbjct 232667 TGAACCTCGGCAGAGAAGTTCTCCACCAAGTTCTCGTTAACAATACCATCGGAAGCAGCG 232608 Query 16655 AAAAACGC--AAGTATGTG--TTTAATAAA--AtttttttCGTT-ATCTGAAAGTTTTAA 16707 ||||| || || || | | | || ||| | || ||||| | || ||| Sbjct 232607 AAAAATGCCAAAATACGGGAAATGAAGAAACGCTCGTTGTCGTTCAAGCGATTGTT---- 232552 Query 16708 CCAGTCAGAAAAATCTTTTGATAAATCGACCTCTTCTACAGTCCAAAAAGAAGCAACAGC 16767 ||||||| | |||||| ||||||| || ||| ||||||||||||| || | || Sbjct 232551 CCAGTCATGAGTGTCTTTTCCCAAATCGATTTCCTCTGCAGTCCAAAAAGATGCTTCTGC 232492 Query 16768 CTTTTTATACATTTTCCATATGTCTTCGTAAACAATAGGAAACACAACA 16816 || || ||||||| ||| || || | ||| |||||| || | |||| Sbjct 232491 TTTCTTGTACATTTGCCAAATCTCGTGGTATTTAATAGGGAAAAGAACA 232443 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 462511884372000