Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Wickerhamia_20fluorescens_20[genbank_20GCA_5F001599155.1_202016-03- 01] 20 sequences; 13,178,500 total letters Query= NC_003027.1 Length=150773 Score E Sequences producing significant alignments: (Bits) Value seq1 194 2e-44 >seq1 Length=2974285 Score = 194 bits (214), Expect = 2e-44 Identities = 498/750 (66%), Gaps = 14/750 (2%) Strand=Plus/Minus Query 13895 TTAGAAATAACGCCCATTTTTTGATATTCACTAACTCTTTTTTCAAAGAAGTTAGTTTTA 13954 |||| ||||| || ||||| || ||||||||||| ||||| || ||||| || || Sbjct 233336 TTAGCCATAACACCAGCCTTTTGGTAGTCACTAACTCTCTTTTCGAAAAAGTTGGTCTTT 233277 Query 13955 CCTTCCAGTGATATATTTTCCATAAAATCAAATGGATTTGTTGACAT---AAACACTTTA 14011 ||| ||| || || ||||||||||| ||||| ||||| || |||| |||| |||| Sbjct 233276 CCTGCCAACGAAATGTTTTCCATAAAGTCAAAGGGATTAGTA-ACATTGTAAAC-CTTT- 233220 Query 14012 TCACAACCTAGTTCTAATAGTAATCTATCCGCAATGAACTCAATATATTGAGACATTAAA 14071 || |||| | | | |||||||| || |||| ||||| | || || |||| || Sbjct 233219 TCGTTGCCTAATGCGACAAGTAATCTGTCGGCAACAAACTCCACGTACTGGCACATCAAT 233160 Query 14072 TCACAATTCATACCTATTAGTTTTACAGGAATTATATTGGTTAAAAATTCTTTTTCTATA 14131 | ||| |||||||| | | | ||| | || || ||||| || ||||| ||| Sbjct 233159 TTACAGTTCATACCCAACAACGAAATAGGCAAAGCATCAGTGAAAAACTCCTTTTCAATA 233100 Query 14132 GACACAGCCTCGTTTATAATAATCGTAATAATTTCATTAGAAGGAGGATATTTTAGATGT 14191 | || ||||| | ||||| || | ||| || | || | |||| | || Sbjct 233099 GCAACGGCCTCTGTGATAATCTTCTCGACAATAGCAGCATCGGGTC--TGTTTTGCAAGT 233042 Query 14192 TTAAAAATTAAA--CACGCAAAATCACAATGAAGGCCCTCATCTCTACTAATAAGTTCGT 14249 | ||| | | || |||||||| || | |||||||| | | || | |||| Sbjct 233041 GGGAGAATAACAAGCAAGCAAAATCGGTGTGCAAACCCTCATCACGGCAGATTAACTCGT 232982 Query 14250 TTGAAAATGTTAATCCTGGCATCAATCCTCGtttttttAACCAAAATATTGCAGCGAATG 14309 | || || || || || |||||||| |||| || || |||||||| || | || || | Sbjct 232981 TGGAGAAAGTCAAACCAGGCATCAAGCCTCTCTTCTTCAACCAAAAGATGGATGCAAACG 232922 Query 14310 ATCCGGAAAAGAATATTCCCTCAACTGCAGCAAACGCTATTAATCGTTCTCCAAACGATG 14369 |||| ||||| || || ||||| |||||||| || | | ||||| ||||| | | Sbjct 232921 ATCCACTGAAGAAAATACCTTCAACAGCAGCAAATGCAACAAGACGTTCGCCAAATAAGG 232862 Query 14370 CTTTTTTGTTCGATATCCATTTTCTAGCCCATTCAGAtttttttttAATAAAATCCATTG 14429 | | | | ||||| | |||||| |||| || ||||| || || || | Sbjct 232861 CCTCGTCATCACTGATCCAGCGTAAAGCCCAGTCAGCCTTCTTTTTGATGCAAGGAATAG 232802 Query 14430 TTTCAATAGCATTAAATAAATGTTCCTTCTCTTTAG--TACTTGAAATGTATGTATCAAT 14487 | ||||||||||| |||||| || ||| || | | ||||| || | || || || Sbjct 232801 TCTCAATAGCATTGAATAAAAAGTCTGCCTCCTTGGGGTCCTTGATAT--AGGTGTCGAT 232744 Query 14488 AAGTAAGCTATACATTTCAGAGTGTATGTTTTCCATAGCTATCTGAAAACCATAAAAACA 14547 | ||| || | || ||||| || |||||||| || || ||||| ||||| || Sbjct 232743 CAACAAGGAGTAGGTCTCTGAGTGGATATTTTCCATCATGATTTGGAAACCGTAAAAGCA 232684 Query 14548 TCTAGCTTCTGACCATTGTACCTCTGAGTAAAATCTTTCGGCCAAATTTTCATTAACTAT 14607 | | ||||||| || ||||| | | || | || |||| || || ||||| || Sbjct 232683 TTTGGCTTCTGGAATCTGAACCTCGGCAGAGAAGTTCTCCACCAAGTTCTCGTTAACAAT 232624 Query 14608 ACCATCACTAGCTGCAAAAAATGCCAATAT 14637 |||||| ||| || ||||||||||| || Sbjct 232623 ACCATCGGAAGCAGCGAAAAATGCCAAAAT 232594 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 482345479413600