Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Wickerhamia_20fluorescens_20[genbank_20GCA_5F001599155.1_202016-03- 01] 20 sequences; 13,178,500 total letters Query= NC_003102.1 Length=139342 Score E Sequences producing significant alignments: (Bits) Value seq1 241 1e-58 seq7 89.7 5e-13 >seq1 Length=2974285 Score = 241 bits (266), Expect = 1e-58 Identities = 1189/1878 (63%), Gaps = 48/1878 (3%) Strand=Plus/Minus Query 22108 GTCCACTGTAAACTGTATGGCGTTTGCGGCCGGTTTGGTGCGAAGATAATACATGCCCGT 22167 ||| ||||| || || ||||| | ||| | | ||| | | || ||||| || || Sbjct 200897 GTCTACTGTGAATTGGATGGCAGCCGAGGCAGCCTGGGTTCTCAAGTAGTACATACCTGT 200838 Query 22168 CTTCAGACCCATCTTCCACGCGTAAAAATGTATCGACGTCAATTTTCCATAACTCGGCAA 22227 || || ||| ||||||| |||||||||| ||||| || ||||| || | || Sbjct 200837 TTTGAGTCCCTTCTTCCAACCGTAAAAATGCATCGAGGTTAATTTACCCATTGTAGGATC 200778 Query 22228 GTCCATGTACACATTGAACGACTGACTCTGATCGATAAACGCTCCTCGATCGGCGGCCAT 22287 | |||| | || || ||||| ||||| || || || | || || || ||||| Sbjct 200777 CTTGATGTGGATGTTCAAAGACTGGGATTGATCAATGAAGGCGGCACGGTCTGCAGCCAT 200718 Query 22288 ATTTATCAATGTACGCATC---GACATTTCCCATACGGTCTTGTACAGTTGCCTGATCTC 22344 || || ||||| | || || |||||||||||||||||||||| | ||| || Sbjct 200717 ATCAAT-AATGT--GTTTCTGAGAGATTTCCCATACGGTCTTGTACAACGCCTTGACTTC 200661 Query 22345 TAACGGTATCGATTCG-ATCCTCTGGACGGACCCGTTATTGTGTATGATCAAATTTTTAA 22403 || || | | | | | ||||| || ||||| ||| ||||| || || | Sbjct 200660 GTCAGGGAT-GTTGGGCAACAGCTGGATCGAACCGTTGTTGGAAATGATGTTGTTCTTCA 200602 Query 22404 TCGTATCGTTCCACAAACCGATGGCGGTCAAATCTTTGACCAGATGACGGTTCACCACTT 22463 | | |||||||| | ||| | | | ||| | || || | |||| || | || Sbjct 200601 TGGAGTCGTTCCAGATACCCAAATCCACAAGATCGCGTAACAAATAAGGGTTGACAATTT 200542 Query 22464 GAAACTCGCCGGACAAGACGCGGCGTTGGTAAATGTTGGATGTGAACGGTTCGAAAGATT 22523 | || || || | ||| || | | ||| || ||||| ||| | ||||| || | | Sbjct 200541 GGAATTCACCAGCCAATACTCTTCTGGAGTAGATATTGGAAGTGTAGGGTTCAAAGCACT 200482 Query 22524 CATTGTTTCCCAGTATCTGAGCGGTCGAAGCGGTCGGCATCGGCGCCAACAGTAGCGAGT 22583 | ||||| |||| ||| || | || || || || ||||| || || | || || ||| | Sbjct 200481 CGTTGTTACCCAATATTTGGGAAGTGGATGCCGTGGGCATGGGAGCAACCAATAACGAAT 200422 Query 22584 TTCTCAAGCCGTGCTTTG--AAATTTTACTCTTGAGCATCGACCAGTCCCACAGATCGGA 22641 |||| | || ||||| | || |||| || | | || ||||||||||| || Sbjct 200421 TTCTAATACCATGCTTAGCCAATTTTTGCTTTAATGTGTC--CCAGTCCCACAACTCACT 200364 Query 22642 CGGCGTCACATTGTCCCACATATCGTATTGCAACACGCCGCGACTCGCCGGGCTGCCTTC 22701 ||| | ||||||| | ||| | || |||| || || || || || Sbjct 200363 GGGCTTTC---TGTCCCAAAGATCAAACTGTAACAAACCCTTGGAGGCTGGAGACCCCTC 200307 Query 22702 GTACGTTTCGTACGGACCATATATC-GCGGCAAGTTCGCAGCTCGCCTCCAACGCGCCGT 22760 ||| ||||||| | ||| | | | ||| ||| |||| || || |||| || |||| Sbjct 200306 GTAACTTTCGTAAGAACCCTCGACCTGCGCCAA-TTCGATACTGGCTTCCACTGCACCGT 200248 Query 22761 AATATATAGTCTCGAAGATTTTCTTGTTCAATTCGGCGGCG----GCGACGCTTTCGTAC 22816 || || || ||||| || | | |||||||| || |||| || | Sbjct 200247 GGTACATGGTTTCGAAAATCTGAATATTCAATTCTCTAGCTTGTTGCGAG----TCAAAG 200192 Query 22817 GGCATACGCATCATCACGAACGCGTCCGCCATACCCTGAACGCCTATACCGATCGGTCGG 22876 |||| | || || || || || |||| |||||| || || | | || |||| Sbjct 200191 GGCAATCTCAATGCCATAAAAGCATCTGCCAAACCCTGCACACCCAATGCAATTGGTCTA 200132 Query 22877 TTTTTCAGATTCGACACTTTTGCCTCGGGCAAAGGATACCAATTCGAATCGATTGTTCTG 22936 || ||| || || ||| || || || | || || | || ||| || ||||| Sbjct 200131 TTCCTCATGTTAGATCTTTTGGCTTCTGGAACGGGGTAAAAGTTACGATCAATGATTCTG 200072 Query 22937 TTCAAGTTTCTGGTCACAATTTTCGTTATNNNNNNNNNNNNNTCAAAGTCGTAA-AC--- 22992 |||||||| | ||| |||| || || | ||||||| ||| || Sbjct 200071 TTCAAGTTACGGGTAACAACCTTGGTAACTTCATGAAGCTTCTCAAAGTTGTACCACAAG 200012 Query 22993 -----GCCCGATTGTACAACAAACTTGTTGACGGCGATCGAGGCAAGATTGCATACGGCC 23047 || || | |||||||| | | ||||| || || | || ||||| || Sbjct 200011 TTGTTGCTGTCTTTTTCAACAAACGAGGGAAGTGCGATAGATGCCAAGTTACATACAGCA 199952 Query 23048 ACCTCGTCTTTGGACGTGTACTCTACAATTTCGGTACATAGATTGCTACACTTTATCGTG 23107 ||||| ||| || | ||| || |||||||| ||| | |||| | | || || Sbjct 199951 ACCTCATCTGGCGAGGAGTATTCGACAATTTCACAACACAAATTGGAAGATTTGATGACA 199892 Query 23108 CCCAAATTGCTCTGGTTGCTTTTTCGATTGCACGAATCCTTGTAGAGCATGTACGGCGTG 23167 ||||| || | || || ||||| |||||| | ||| ||||| | |||| | || || Sbjct 199891 CCCAAGTTCTTTTGATTAGTTTTTTTATTGCATGCATCTTTGTACAACATGAATGGGGTA 199832 Query 23168 CCCGTCTCGACCTGCGACTCGATGATCGCTCGCCACATAGTCTGAGCGTGAACACGTCGC 23227 || || ||| |||| ||| | || || ||| | ||||||| | | | ||| Sbjct 199831 CCGGTTTCGGTTTGCGCCTCCAAAATGGCGTACCATAATTTCTGAGCCTTGATA-GTCTT 199773 Query 23228 ACGTAC-CTGCCTTCTTCCTCGTACTTTTGGTACAACGCGTCAAATTCGGCACCGTAACA 23286 | | | | | ||| |||||||| | |||||| || ||||| || |||||||| Sbjct 199772 TCTTCCACGGTTTTCACGTTCGTACTTCTCGTACAATGCCTCAAACTCATCACCGTAAAC 199713 Query 23287 GTCGGCCAGGCCGGGCGATTGCATCGGACACATGAGACTCCACATTGAGTCATTTT---C 23343 |||| || || | | | | ||| | | | ||||| | || |||| | | Sbjct 199712 ATCGGACAAACCTTGGGCCTCATTAGGAGAGAACAAGGTCCAC--TCAG-CATTCTGCTC 199656 Query 23344 AACGCGTCTCATAAAAAGATCCGGTATCCATAGAGCGTAGAACAGTTCGCGGGCGCGCAC 23403 ||| | ||||||| | || || ||||| | || ||||| || | || | || Sbjct 199655 AACTCTCTTCATAAACAAGTCAGGAATCCACAATGCTGGGAACAAATCTCTTGCCCTCAT 199596 Query 23404 CTCCTCTTTGCCGGTGTTCTTTTTCAAATCCAAAAAGTCCAACACGTCCGCATGCCACGG 23463 || || || || |||||| | | ||| | || || || | ||||| ||||| || Sbjct 199595 TTCTTCCTTACCATGATTCTTTCTAATATCGATGAAATCAAAGATATCCGCGTGCCATGG 199536 Query 23464 CTCGAGGTAAACGGCAAACGCGCCCGGTCTCTTATTGCCGCCCTGATCGACGTAACGGGC 23523 || | || | |||||| || || ||||||||||| || |||||||| |||||||| || Sbjct 199535 TTCCAAATATAAGGCAAATGCACCGGGTCTCTTATTACCACCCTGATCCACGTAACGAGC 199476 Query 23524 CGTGTTGTTGTACACTCTTAGCATCGGCACGAGACCGTTGGACGCGCCGCCTACGCCCGC 23583 ||||| ||| | ||||| | ||| || | || ||| || || | ||| || || Sbjct 199475 AGTGTTATTGAAAACTCTAACCATAGGAATGATACCATTAGAGGTACCGTTGGTACCAGC 199416 Query 23584 CACACTCGAACCTTTTGCTCGAACGTTGTGAACGTGGAAACCTATGCCTCCGCCCGATTT 23643 | | ||| | | |||| |||||| | ||| ||||| || ||||| | || Sbjct 199415 AATGTAGGCACCAGTCGAGCGAATGTTGTGTATGTGTAAACCAATACCTCCAGCACTCTT 199356 Query 23644 CGATATCATCGCGCATTGTTTCAGAGTGTCGTAGATGCCCTCGATGCTGTCCTCTTTGGT 23703 || |||| || ||| |||| || || || || || || || || ||||| | Sbjct 199355 GGAAATCAAGGCACATGTCTTCAAGGTATCATAAATACCGTCAATAGAATCATCTTTCAT 199296 Query 23704 CGCGACCAAGAAACACGAAGACATTTGCGCTTTGGGCGTAGCGGCCGAGAACAGTGTCGG 23763 || | ||| || ||||| |||||||| | ||||| ||| | || |||| || || Sbjct 199295 AGCAATCAAAAAGCACGAGGACATTTGAGGGTTGGGTGTACCAGCATTAAACAAAGTAGG 199236 Query 23764 GCTGGCGTGCGTAAAGTATCCATTCGACATTAGATTGTACGTGTCGATGGCGGCATCAAT 23823 | |||| ||||||| || | ||||| | |||||| || || ||| | ||| Sbjct 199235 CGAGCCGTGGGTAAAGTGTCTCTGGGACATCATATTGTAAGTTTCAATGACTCTGGGAAT 199176 Query 23824 GTCCTCTCCGTGTATACCGATGGCGACGCGCATCATCATGTATTGAGGTCTCT---CGAC 23880 ||| || || || ||||| ||||| || | ||| || | || |||||||| | |||| Sbjct 199175 GTCGTCACCATGAATACCAATGGCAACTCTCATAATTAAGTGCTGAGGTCTTTCTGCGAC 199116 Query 23881 CGTGACGCCGTTAATTTTGAACAGATATGAACGTTGCATCGTTTTAAATCCAAAATAGTC 23940 | ||| |||||| | || || || || | | | ||||| || ||||| || | Sbjct 199115 TTT---GCCATTAATTCTTAAAAGGTAAGATCTCTCTAAAGTTTTGAAACCAAAGTAATT 199059 Query 23941 ATAGTTAAAGTCACGATC 23958 |||||||| |||||||| Sbjct 199058 GTAGTTAAAATCACGATC 199041 Score = 233 bits (258), Expect = 2e-56 Identities = 613/922 (66%), Gaps = 25/922 (3%) Strand=Plus/Plus Query 57507 GATGAACCACTTTTGCAAGAGAATCCCCGTAGATTTGTCATGTTTCCGATTGAATATCCA 57566 ||||| || |||||| | ||||| | ||| | ||||| | || || ||| |||| | Sbjct 232408 GATGAGCCTCTTTTGAAGGAGAACACTCGTCGTTTTGTTCTTTTCCCTATTAAATACCAC 232467 Query 57567 GACATTTGGAACATGTACAAAAAGGCAGAAGCATCGTTTTGGACCGTCGAAGAAGTAGAC 57626 || |||||| | |||||||| || ||||||||||| |||||||| | || ||| | || Sbjct 232468 GAGATTTGGCAAATGTACAAGAAAGCAGAAGCATCTTTTTGGACTGCAGAGGAAATCGAT 232527 Query 57627 CTGTCTAAGGAT-CTGAGCGATTGGGAT--TCCCTCAAA-GAATCTGAGAGAAATTTTAT 57682 || || || || | || ||| | || || || || ||| | || || Sbjct 232528 TTGGGAAAAGACACTCAT-GACTGGAACAATCGCTTGAACGACAACGAGCGTTTCTTCAT 232586 Query 57683 TAAACACGTGTTGGCGTTTTTCGCCGCATCCGATGGTATTGTTAACGAGAATTTGGTCGA 57742 | | | ||||| |||||||| || ||||||||||||||||||||||| ||||| || Sbjct 232587 TTCCCGTATTTTGGCATTTTTCGCTGCTTCCGATGGTATTGTTAACGAGAACTTGGTGGA 232646 Query 57743 AAGATTTTCACAAGAAGTGCAAGTGACGGAGGCGAGATGCTTTTACGGATTTCAAGTGGC 57802 | || || || || || | | || || | |||||||||||| || ||| | Sbjct 232647 GAACTTCTCTGCCGAGGTTCAGATTCCAGAAGCCAAATGCTTTTACGGTTTCCAAATCAT 232706 Query 57803 CATTGAAAACGTGCATTCAGAAATGTATTCGCTACTCATCGATACGTACGTGAAGGACAA 57862 || ||||| | || ||||| | || || | | ||||| || || | |||||| Sbjct 232707 GATGGAAAATATCCACTCAGAGACCTACTCCTTGTTGATCGACACCTATATCAAGGACCC 232766 Query 57863 CGACGAGAAACGTAGACTGTT----CAACGCGATCGAAACAATGCCCGCGATCGCCAAGA 57918 | | ||| | ||||| || ||| || || || || || || ||| |||| Sbjct 232767 CAAGGAG----GCAGACTTTTTATTCAATGCTATTGAGACTATTCCTTGCATCAAAAAGA 232822 Query 57919 AGGCAGAGTGGTCAATCAAATGGATAAAAAGCGCCACGGCCACGTTCGCCGAGAGGCTAA 57978 |||| || ||| | | ||||| | | | |||| || | ||| | || Sbjct 232823 AGGCTGACTGGGCTTTACGCTGGATCAGTGATGACGAGGCCTTATTTGGCGAACGTCTTG 232882 Query 57979 TCGCGTTCGCCGCCGTCGAAGGTATATTCTTTTCGGGCAGCTTTGCGGCAATATTTTGGA 58038 | || || || || || |||||||| ||||| || ||||| | || |||||| Sbjct 232883 TTGCATTTGCTGCTGTTGAAGGTATTTTCTTCAGTGGATCGTTTGCATCCATCTTTTGGT 232942 Query 58039 TGAAGAAACGCGGCCTGATGCCCGGCCTGACGTTTAGCAACGAGTTGATATCGCGCGACG 58098 ||||||| | ||| ||||||| || |||| || ||||||||| || | || || | Sbjct 232943 TGAAGAAGAGAGGCTTGATGCCTGGTTTGACTTTCTCCAACGAGTTAATCTGCCGTGATG 233002 Query 58099 AGGGTCTCCATACTGATTTTGCGTGCCTAATGTACTCTCACATTGTCAATAAA---CCGA 58155 ||||| | || || |||||||| ||| | | | ||| ||| ||| ||| | | |||| Sbjct 233003 AGGGTTTGCACACCGATTTTGCTTGCTTGTTATTCTCCCAC-TTG-CAAAACAGACCCGA 233060 Query 58156 CGCGGG-ATCGCATCTTGGACATTATCACCGAGGCGGTCGCGATCGAAAATGAGTTTGTC 58214 || | || | || | | |||||||| ||||| || || || ||||| |||||| || Sbjct 233061 TGCTGCTATTG--TCGAGAAGATTATCACAGAGGCCGTTGCTATTGAAAAGGAGTTTTTC 233118 Query 58215 ACCGAAGCCCTACCGGTGGCCATGCTCGGTATGAACAATGATTTGATGTCAAAGTACATT 58274 || || || | || | | || | ||||||||| | | ||||||| ||||| | Sbjct 233119 ACTGATGCTTTGCCTATTTCGTTGTTGGGTATGAACTGTAAATTGATGTGCCAGTACGTG 233178 Query 58275 GAGTTTGTTGCCGACAGACTTTTGCTCGAACT--GATTGGAGAGCGTCATTACAACACGA 58332 |||||||||||||||||| | | ||| | | | || | || |||||| | Sbjct 233179 GAGTTTGTTGCCGACAGATTACTTGTCGCATTAGGCAACGAAAAGGT--TTACAATGTTA 233236 Query 58333 AAAATCCGTTTGATTTTATGAATCTGATCTCGCTCGAGGGCAAGACAAACTTTTTCGaaa 58392 ||||| ||||| |||||| | || ||| | | || ||||| ||||||||||||| Sbjct 233237 CTAATCCCTTTGACTTTATGGAAAACATTTCGTTGGCAGGAAAGACCAACTTTTTCGAAA 233296 Query 58393 aaaaaGTTAGCGAATATCAAAA 58414 | | |||||| || || ||||| Sbjct 233297 AGAGAGTTAGTGACTACCAAAA 233318 >seq7 Length=860703 Score = 89.7 bits (98), Expect = 5e-13 Identities = 157/229 (69%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 31192 CATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTC 31251 ||||||||||||||| ||||| | || || || || |||||| | || || || | || Sbjct 37632 CATGCAAATTTTCGTCAAGACCTTAACCGGTAAGACTATCACCCTTGAGGTGGAGTCTTC 37691 Query 31252 CGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCA 31311 ||||| | || | ||||| | || |||||||||||| | || || ||||| Sbjct 37692 CGACACCATTGACAATGTCAAGTCCAAGATTCAGGACAAGGAAGGTATTCCCCCTGACCA 37751 Query 31312 GCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAA 31371 ||| | | || || ||||| || || ||||| ||| ||| | || || || Sbjct 37752 GCAAAGATTGATTTTTGCTGGTAAGCAATTGGAGGACGGCCGTACTCTTTCTGACTACAA 37811 Query 31372 CATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGGT 31420 ||| ||||| || || |||||||| |||| | ||| |||| || ||| Sbjct 37812 CATCCAAAAGGAGTCTACTCTTCACTTGGTGTTGAGATTGAGAGGTGGT 37860 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 445766288558400