Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Wickerhamia_20fluorescens_20[genbank_20GCA_5F001599155.1_202016-03- 01] 20 sequences; 13,178,500 total letters Query= NC_003225.3 Length=309286 Score E Sequences producing significant alignments: (Bits) Value seq1 152 1e-31 seq6 100 6e-16 >seq1 Length=2974285 Score = 152 bits (168), Expect = 1e-31 Identities = 306/447 (68%), Gaps = 14/447 (3%) Strand=Plus/Plus Query 101901 ATTTGGCGGAACTAATTGTTGCCTTTGCTGCAGTTGAAGGAATCTTCTTTAGTGGTGCAT 101960 |||||||| ||| ||||||| |||||||| |||||||| || ||||| ||||| | | Sbjct 232866 ATTTGGCG-AACGTCTTGTTGCATTTGCTGCTGTTGAAGGTATTTTCTTCAGTGGATCGT 232924 Query 101961 TCGCATCCATTTTCTGGATCAAGAACAGGGGTATTTTGCCTGGTCTCACCTCCTCCAATG 102020 | |||||||| || ||| | ||||| || || | |||||||| | || | |||||| | Sbjct 232925 TTGCATCCATCTTTTGGTTGAAGAAGAGAGGCTTGATGCCTGGTTTGACTTTCTCCAACG 232984 Query 102021 AGTTCATTTCTAGGGACGAAGGTCTTCATCGCGACTTTGCATGCATGCTGTTGAAAAAGG 102080 |||| || | | || || ||| | || ||| ||||| ||| || | || | Sbjct 232985 AGTTAATCTGCCGTGATGAGGGTTTGCACACCGATTTTGCTTGCTTGTTATTCTCCCAC- 233043 Query 102081 GTTTTGTTGAT---ACCCCATCAAGAGAAAGGATTCTTGAA-ATTGTCACTGAAGCCGTC 102136 ||| | |||| || | | | || ||| ||| |||| || ||||| Sbjct 233044 ---TTGCAAAACAGACCCGATGCTGCTATTG---TCGAGAAGATTATCACAGAGGCCGTT 233097 Query 102137 CGAATTGAACAAGAATTTCTCACAGTTTCCCTGCCTGTTAAATTAGTGGGAATGAACTGC 102196 |||||| | || ||| |||| | | | ||||| || || |||| |||||||| Sbjct 233098 GCTATTGAAAAGGAGTTTTTCACTGATGCTTTGCCTATTTCGTTGTTGGGTATGAACTGT 233157 Query 102197 AAGTTGATGAGCCAGTACATTGAATTTGTGGCAGATAAACTATTGGTTGAAATGGGACTA 102256 || |||||| |||||||| | || ||||| || || | | || | || | | | || Sbjct 233158 AAATTGATGTGCCAGTACGTGGAGTTTGTTGCCGACAGATTACTTGTCGCATTAGGCAAC 233217 Query 102257 GAAAAGCACTATAATGTTACCAACCCCTTCCCATTCATGGACAATATTTCCCTCG-AGAA 102315 |||||| || |||||||| || ||||| || ||||| || ||||| | | || | Sbjct 233218 GAAAAGGTTTACAATGTTACTAATCCCTTTGACTTTATGGAAAACATTTCGTTGGCAGGA 233277 Query 102316 TAAGACCAACTTTTTTGAAAAGAGAGT 102342 |||||||||||||| ||||||||||| Sbjct 233278 -AAGACCAACTTTTTCGAAAAGAGAGT 233303 Score = 87.8 bits (96), Expect = 4e-12 Identities = 172/249 (69%), Gaps = 14/249 (6%) Strand=Plus/Minus Query 94792 CCTCCAGCAGTCTTGGAGATGATTGC-CGCCTCCTTAAGAGTATCATAAATACCCTCAAT 94850 ||||||||| ||||||| || | || | || | ||| |||||||||||||| ||||| Sbjct 199369 CCTCCAGCACTCTTGGAAATCAAGGCACATGTCTTCAAG-GTATCATAAATACCGTCAAT 199311 Query 94851 GCTATCATCTTGAAGGCCCAGAAGGAAGCACGAGGAAAGTTGGGGTGTGACTGTTCCACA 94910 |||||||| | | | | ||||||||||| | ||| || || ||| ||| Sbjct 199310 AGAATCATCTTTCATAGCAATCAAAAAGCACGAGGACATTTGAGGGTTGGGTGTACCAGC 199251 Query 94911 ATTAAACAGTGTGGGGGAAGCATGGGTAAAATAGTGCCTC---GACATGAGATCATATGT 94967 |||||||| || || || | |||||||| ||| ||| ||||| | || || || Sbjct 199250 ATTAAACAAAGTAGGCGAGCCGTGGGTAAA---GTGTCTCTGGGACATCATATTGTAAGT 199194 Query 94968 TTCAATGACAGATTTG---ATGTCTGATCCGTGAATGCCGACAGCCACACGCATAATCAT 95024 ||||||||| | || ||||| || ||||| || | || || | |||||| | Sbjct 199193 TTCAATGAC---TCTGGGAATGTCGTCACCATGAATACCAATGGCAACTCTCATAATTAA 199137 Query 95025 GTCCTGAGG 95033 || |||||| Sbjct 199136 GTGCTGAGG 199128 >seq6 Length=1507273 Score = 100 bits (110), Expect = 6e-16 Identities = 273/416 (66%), Gaps = 28/416 (7%) Strand=Plus/Minus Query 35393 GAGGGAGATTTGGGACCCGTATACGGATTCCAATGGCGTCATTTTGGTGCTGAATATGAT 35452 ||||| || ||||||||||| || || || |||||||| |||||||| || ||||| | Sbjct 987379 GAGGGCGACTTGGGACCCGTTTATGGGTTTCAATGGCGCCATTTTGGAGCCGAATACAAA 987320 Query 35453 ACCTGTTCTTCCGATTATACTGGAAAGGGTATTGATCAATTGGCCAATATACTAAAGACC 35512 |||| | || || ||||| |||||| | ||||| | || | |||| | Sbjct 987319 GACTGTGACACAGACTACACTGGGAAGGGTGTAGATCAGCTACAGGATGTTATAAACAAG 987260 Query 35513 CTGAGAGAAAATCCAGATGATAGAAGGATGATTATGACGGCATGGAATCCTATGGATCTT 35572 || | | | || ||| | ||| |||| || || ||| |||| ||||| ||| ||| || Sbjct 987259 CTCAAAAATAACCCATACGATCGAAGAATTATCATGTCGGCTTGGAACCCTGCAGAT-TT 987201 Query 35573 CA-CCTTATGGCTCTTCCTCCATGCCA-CATGACTGCTCAATTTTATGTGGCTAA---TG 35627 || |||||| | ||||||||||| | |||| || |||||||| ||| | Sbjct 987200 CAGTAAAATGGCTTTACCTCCATGCCATGTTTTCTGC-CAGTTTTATGT---TAACTTTC 987145 Query 35628 GAGAAT------------------TGTCGTGCCAGTTGTATCAGCGAAGCGGAGATGTCG 35669 ||||| | ||||| ||||| ||||| || | ||| | | Sbjct 987144 CAGAATCCCCGTCTAAACCTAAGCTATCGTGTTTATTGTACCAGCGCAGTTGCGATATGG 987085 Query 35670 GGTTGGGCGTGCCCTTCAATATTGCATCATACTCTCTTCTGACTCATCTGATGGCCAGTA 35729 | ||||| || || || ||||||||||||||| | | || || | |||| ||| || Sbjct 987084 GATTGGGTGTTCCATTTAATATTGCATCATACGCGTTGCTCACAAAAATGATTGCCCATA 987025 Query 35730 TGGTGGGTCTAAAACCGGGAGAGTTTATCCTCACTCTTGGTGACGCACACATTTAT 35785 | |||| | | | || || ||||| | ||| | |||||||| || ||||| Sbjct 987024 TAGTGGATATGGATTGTGGTGAATTTATTCACACCTTAGGTGACGCGCATGTTTAT 986969 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 989583746419100