Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Wickerhamia_20fluorescens_20[genbank_20GCA_5F001599155.1_202016-03-
01] 20 sequences; 13,178,500 total letters
Query= NC_003225.3
Length=309286
Score E
Sequences producing significant alignments: (Bits) Value
seq1 152 1e-31
seq6 100 6e-16
>seq1
Length=2974285
Score = 152 bits (168), Expect = 1e-31
Identities = 306/447 (68%), Gaps = 14/447 (3%)
Strand=Plus/Plus
Query 101901 ATTTGGCGGAACTAATTGTTGCCTTTGCTGCAGTTGAAGGAATCTTCTTTAGTGGTGCAT 101960
|||||||| ||| ||||||| |||||||| |||||||| || ||||| ||||| | |
Sbjct 232866 ATTTGGCG-AACGTCTTGTTGCATTTGCTGCTGTTGAAGGTATTTTCTTCAGTGGATCGT 232924
Query 101961 TCGCATCCATTTTCTGGATCAAGAACAGGGGTATTTTGCCTGGTCTCACCTCCTCCAATG 102020
| |||||||| || ||| | ||||| || || | |||||||| | || | |||||| |
Sbjct 232925 TTGCATCCATCTTTTGGTTGAAGAAGAGAGGCTTGATGCCTGGTTTGACTTTCTCCAACG 232984
Query 102021 AGTTCATTTCTAGGGACGAAGGTCTTCATCGCGACTTTGCATGCATGCTGTTGAAAAAGG 102080
|||| || | | || || ||| | || ||| ||||| ||| || | || |
Sbjct 232985 AGTTAATCTGCCGTGATGAGGGTTTGCACACCGATTTTGCTTGCTTGTTATTCTCCCAC- 233043
Query 102081 GTTTTGTTGAT---ACCCCATCAAGAGAAAGGATTCTTGAA-ATTGTCACTGAAGCCGTC 102136
||| | |||| || | | | || ||| ||| |||| || |||||
Sbjct 233044 ---TTGCAAAACAGACCCGATGCTGCTATTG---TCGAGAAGATTATCACAGAGGCCGTT 233097
Query 102137 CGAATTGAACAAGAATTTCTCACAGTTTCCCTGCCTGTTAAATTAGTGGGAATGAACTGC 102196
|||||| | || ||| |||| | | | ||||| || || |||| ||||||||
Sbjct 233098 GCTATTGAAAAGGAGTTTTTCACTGATGCTTTGCCTATTTCGTTGTTGGGTATGAACTGT 233157
Query 102197 AAGTTGATGAGCCAGTACATTGAATTTGTGGCAGATAAACTATTGGTTGAAATGGGACTA 102256
|| |||||| |||||||| | || ||||| || || | | || | || | | | ||
Sbjct 233158 AAATTGATGTGCCAGTACGTGGAGTTTGTTGCCGACAGATTACTTGTCGCATTAGGCAAC 233217
Query 102257 GAAAAGCACTATAATGTTACCAACCCCTTCCCATTCATGGACAATATTTCCCTCG-AGAA 102315
|||||| || |||||||| || ||||| || ||||| || ||||| | | || |
Sbjct 233218 GAAAAGGTTTACAATGTTACTAATCCCTTTGACTTTATGGAAAACATTTCGTTGGCAGGA 233277
Query 102316 TAAGACCAACTTTTTTGAAAAGAGAGT 102342
|||||||||||||| |||||||||||
Sbjct 233278 -AAGACCAACTTTTTCGAAAAGAGAGT 233303
Score = 87.8 bits (96), Expect = 4e-12
Identities = 172/249 (69%), Gaps = 14/249 (6%)
Strand=Plus/Minus
Query 94792 CCTCCAGCAGTCTTGGAGATGATTGC-CGCCTCCTTAAGAGTATCATAAATACCCTCAAT 94850
||||||||| ||||||| || | || | || | ||| |||||||||||||| |||||
Sbjct 199369 CCTCCAGCACTCTTGGAAATCAAGGCACATGTCTTCAAG-GTATCATAAATACCGTCAAT 199311
Query 94851 GCTATCATCTTGAAGGCCCAGAAGGAAGCACGAGGAAAGTTGGGGTGTGACTGTTCCACA 94910
|||||||| | | | | ||||||||||| | ||| || || ||| |||
Sbjct 199310 AGAATCATCTTTCATAGCAATCAAAAAGCACGAGGACATTTGAGGGTTGGGTGTACCAGC 199251
Query 94911 ATTAAACAGTGTGGGGGAAGCATGGGTAAAATAGTGCCTC---GACATGAGATCATATGT 94967
|||||||| || || || | |||||||| ||| ||| ||||| | || || ||
Sbjct 199250 ATTAAACAAAGTAGGCGAGCCGTGGGTAAA---GTGTCTCTGGGACATCATATTGTAAGT 199194
Query 94968 TTCAATGACAGATTTG---ATGTCTGATCCGTGAATGCCGACAGCCACACGCATAATCAT 95024
||||||||| | || ||||| || ||||| || | || || | |||||| |
Sbjct 199193 TTCAATGAC---TCTGGGAATGTCGTCACCATGAATACCAATGGCAACTCTCATAATTAA 199137
Query 95025 GTCCTGAGG 95033
|| ||||||
Sbjct 199136 GTGCTGAGG 199128
>seq6
Length=1507273
Score = 100 bits (110), Expect = 6e-16
Identities = 273/416 (66%), Gaps = 28/416 (7%)
Strand=Plus/Minus
Query 35393 GAGGGAGATTTGGGACCCGTATACGGATTCCAATGGCGTCATTTTGGTGCTGAATATGAT 35452
||||| || ||||||||||| || || || |||||||| |||||||| || ||||| |
Sbjct 987379 GAGGGCGACTTGGGACCCGTTTATGGGTTTCAATGGCGCCATTTTGGAGCCGAATACAAA 987320
Query 35453 ACCTGTTCTTCCGATTATACTGGAAAGGGTATTGATCAATTGGCCAATATACTAAAGACC 35512
|||| | || || ||||| |||||| | ||||| | || | |||| |
Sbjct 987319 GACTGTGACACAGACTACACTGGGAAGGGTGTAGATCAGCTACAGGATGTTATAAACAAG 987260
Query 35513 CTGAGAGAAAATCCAGATGATAGAAGGATGATTATGACGGCATGGAATCCTATGGATCTT 35572
|| | | | || ||| | ||| |||| || || ||| |||| ||||| ||| ||| ||
Sbjct 987259 CTCAAAAATAACCCATACGATCGAAGAATTATCATGTCGGCTTGGAACCCTGCAGAT-TT 987201
Query 35573 CA-CCTTATGGCTCTTCCTCCATGCCA-CATGACTGCTCAATTTTATGTGGCTAA---TG 35627
|| |||||| | ||||||||||| | |||| || |||||||| ||| |
Sbjct 987200 CAGTAAAATGGCTTTACCTCCATGCCATGTTTTCTGC-CAGTTTTATGT---TAACTTTC 987145
Query 35628 GAGAAT------------------TGTCGTGCCAGTTGTATCAGCGAAGCGGAGATGTCG 35669
||||| | ||||| ||||| ||||| || | ||| | |
Sbjct 987144 CAGAATCCCCGTCTAAACCTAAGCTATCGTGTTTATTGTACCAGCGCAGTTGCGATATGG 987085
Query 35670 GGTTGGGCGTGCCCTTCAATATTGCATCATACTCTCTTCTGACTCATCTGATGGCCAGTA 35729
| ||||| || || || ||||||||||||||| | | || || | |||| ||| ||
Sbjct 987084 GATTGGGTGTTCCATTTAATATTGCATCATACGCGTTGCTCACAAAAATGATTGCCCATA 987025
Query 35730 TGGTGGGTCTAAAACCGGGAGAGTTTATCCTCACTCTTGGTGACGCACACATTTAT 35785
| |||| | | | || || ||||| | ||| | |||||||| || |||||
Sbjct 987024 TAGTGGATATGGATTGTGGTGAATTTATTCACACCTTAGGTGACGCGCATGTTTAT 986969
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 989583746419100
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |