Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Wickerhamia_20fluorescens_20[genbank_20GCA_5F001599155.1_202016-03- 01] 20 sequences; 13,178,500 total letters Query= NC_003310.1 Length=196858 Score E Sequences producing significant alignments: (Bits) Value seq1 271 1e-67 >seq1 Length=2974285 Score = 271 bits (300), Expect = 1e-67 Identities = 1449/2289 (63%), Gaps = 51/2289 (2%) Strand=Plus/Minus Query 62039 GTCCAATGTGAATTGAATGGGAGCGGATGCGGGTTTCGTACGTAGATAGTACATTCCCGT 62098 ||| | ||||||||| |||| ||| || || | | || | | |||||||| || || Sbjct 200897 GTCTACTGTGAATTGGATGGCAGCCGAGGCAGCCTGGGTTCTCAAGTAGTACATACCTGT 200838 Query 62099 TTTTAGACCGAGACTCCATCCGTAAAAATGCATACTCGTTAGTTTGGAATAACTCGGATC 62158 ||| || || |||| |||||||||||||| |||| ||| | ||||| Sbjct 200837 TTTGAGTCCCTTCTTCCAACCGTAAAAATGCATCGAGGTTAATTTACCCATTGTAGGATC 200778 Query 62159 TGCTATATGGATATTCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCCAT 62218 || ||||| |||| ||| || |||||| |||||||| | | |||||||||||| Sbjct 200777 CTTGATGTGGATGTTCAAAGACTGGGATTGATCAATGAAGGCGGCACGGTCTGCAGCCAT 200718 Query 62219 TTTTATGATCGTCTTT-TGTGCAATTTCCCAAATAGTTTTATA-AACTCGCTTAATATCT 62276 | || || || ||| || | |||||||| | || || || ||| | ||| | || Sbjct 200717 ATCAATAAT-GTGTTTCTGAGAGATTTCCCATACGGTCTTGTACAACGC-CTTGACTTCG 200660 Query 62277 TCTGGAAGGTTTGTATTC---TGAATGGATCCACCATCTACCATAATCCTATTCTTGATC 62333 || || | ||| | | || || || || | || || | ||||| || Sbjct 200659 TCAGGGATGTTGGGCAACAGCTGGATCGAACCGTTGTTGGAAATGATGTTGTTCTTCATG 200600 Query 62334 TCATCATTCCATAATTTTCTC---TCGGTTAAAACTCTAAGGAGATGCGGGTTAACTACT 62390 || ||||| | | | | || | | | | | | || ||||| || | | Sbjct 200599 GAGTCGTTCCAGA---TACCCAAATCCACAAGATCGCGTAACAAATAAGGGTTGACAATT 200543 Query 62391 TGGAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCCACCGAC 62450 |||||||| |||| ||||||||| | | ||| ||||| || || ||||| | || Sbjct 200542 TGGAATTCACCAGCCAATACTCTTCTGGAGTAGATATTGGAAGTGTAGGGTTCAAAGCAC 200483 Query 62451 TCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAAACTA 62510 || || || ||||| ||||| | ||| ||||| || ||||| || || |||||||| | Sbjct 200482 TCGTTGTTACCCAATATTTGGGAAGTGGATGCCGTGGGCATGGGAGCAACCAATAACGAA 200423 Query 62511 TTTCTAAGACCGTATGTTCTG---ATTTTATCTTTTAGATGTTCCCAATTCCAAAGATCC 62567 ||||||| ||| ||| | | ||||| |||| | ||| |||| | ||| | || Sbjct 200422 TTTCTAATACC--ATGCTTAGCCAATTTTTGCTTTAATGTGT-CCCAGTCCCACAACTCA 200366 Query 62568 GACGGTACAACANNNNNNNNNNNATATTGTAGAATACCGTTACTGGCGTACGATCCTACA 62627 || | | |||| | ||| || ||| || || | Sbjct 200365 CTGGGCTTTCTGTCCCAAAGATCAAACTGTAACAAACCCTTGGAGGCTGGAGACCCCTCG 200306 Query 62628 TATGTATCATATGGTCCTTCCTTCTCAGCTAGTTTACAACTCGCCTCTAATGCACCGTAA 62687 || | || || | || || || || | || ||| || || | |||||||| Sbjct 200305 TAACTTTCGTAAGAACCCTCGACCTGCGCCAATTCGATACTGGCTTCCACTGCACCGTGG 200246 Query 62688 TAAATGGTTTCAAAGATCTTCTTATTTAGATCTTGTGCTTCCGGGCTATCAAATGGATAA 62747 || |||||||| || |||| |||| | ||| |||| | ||||| || | Sbjct 200245 TACATGGTTTCGAAAATCTGAATATTCAATTCTCTAGCTTGTTGCGAGTCAAAGGGCAAT 200186 Query 62748 TTTAAGAGAATAAACGCGTCCGCTAATCCTTGAACACCAATACCGATAGGTCTATGTCTC 62807 | || ||||| || || || || || || ||||| | | || ||||||| ||| Sbjct 200185 CTCAATGCCATAAAAGCATCTGCCAAACCCTGCACACCCAATGCAATTGGTCTATTCCTC 200126 Query 62808 TTATTAGAGATTTCAGCTTCTGGAATAGGATAATAATTAATATCTATAATTTTATTGAGA 62867 | ||||| ||| |||||||||| || ||| | ||| ||| || ||| | || | Sbjct 200125 ATGTTAGATCTTTTGGCTTCTGGAACGGGGTAAAAGTTACGATCAATGATTCTGTTCAAG 200066 Query 62868 TTTCTGACAATTACTTTGACCACATCCTTCAGTTTGAGAAAAT-------CAAATCGC-- 62918 || | | || || ||| || || | || || ||| | ||| | | Sbjct 200065 TTACGGGTAACAACCTTGGTAACTTCATGAAGCTTCTCAAAGTTGTACCACAAGTTGTTG 200006 Query 62919 CCATCTATT---ACAAACATGTTCAATGCAACAGATGCCAGATTACACACGGCTACCTCA 62975 | ||| || |||||| | | ||| | |||||||| ||||| || || |||||| Sbjct 200005 CTGTCTTTTTCAACAAACGAGGGAAGTGCGATAGATGCCAAGTTACATACAGCAACCTCA 199946 Query 62976 TTAGCATCCGCATATTGTATTATCTCAGTGCAAAGATTACTACACTTGATAGTTCCTAAA 63035 | | | |||| | || ||| || | ||| | | ||||| || || Sbjct 199945 TCTGGCGAGGAGTATTCGACAATTTCACAACACAAATTGGAAGATTTGATGACACCCAAG 199886 Query 63036 TTTTGTTGATTACTCTTTTTGTTACACGCATCCTTATAAAGAATGAATGGAGTACCAGTT 63095 || | ||||||| | ||||| || || ||||| || || | |||||||| ||||| ||| Sbjct 199885 TTCTTTTGATTAGTTTTTTTATTGCATGCATCTTTGTACAACATGAATGGGGTACCGGTT 199826 Query 63096 TCAATCTGAGATTCTATAATCGCTTTCCAGACGACTCGAGCCTTTATTATAGATTTGTAT 63155 || | || | || | ||| || | ||| | ||||||| || | ||| | Sbjct 199825 TCGGTTTGCGCCTCCAAAATGGCGTACCATAATTTCTGAGCCTTGATAGTC--TTTCTTC 199768 Query 63156 CTCC--TTTCTCTTTCGTATAGAGTATACAATCGTTCGAACTCGTCTCCCCAAACATTGT 63213 | | |||| | |||||| |||||| || ||||| || || |||||| | Sbjct 199767 CACGGTTTTCACGTTCGTACTTCTCGTACAATGCCTCAAACTCATCACCGTAAACATCGG 199708 Query 63214 CCAATC-TAGGACATTCATCCGGACACATCAACGACCACTCTCCGTCATCCTTCACTCGT 63272 ||| | | || | | ||| ||| | | ||| | |||||| | | | || |||| Sbjct 199707 ACAAACCTTGGGCCT-CATTAGGAGAGAACAAGGTCCACTCAGCATTCTGCTCAACTCTC 199649 Query 63273 TTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTTGTTCTATGTTCCTCG 63332 |||||||| | ||||||||||| | ||| || | |||||||| || ||| || Sbjct 199648 TTCATAAACAAGTCAGGAATCCACAATGCTGGGAACAAATCTCTTGCCCTCATTTCTTCC 199589 Query 63333 TTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAG 63392 || || ||||||| ||| ||||| ||| | | ||||| | ||||| |||||||| Sbjct 199588 TTACCATGATTCTTTCTAATATCGATGAAATCAAAGATATCCGCGTGCCATGGTTCCAAA 199529 Query 63393 TATATGGCCATAACTCCAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTA 63452 |||| ||| | | || || | || || || |||||||| | ||| | ||| |||||| Sbjct 199528 TATAAGGCAAATGCACCGGGTCTCTTATTACCACCCTGATCCACGTAACGAGCAGTGTTA 199469 Query 63453 TTATAAACTCTCAACATTGGAATAATACCGTTTGATATACCATTGGTACCGGAGATATAG 63512 || ||||||| | ||| ||||| ||||| || || |||| |||||||| | || ||| Sbjct 199468 TTGAAAACTCTAACCATAGGAATGATACCATTAGAGGTACCGTTGGTACCAGCAATGTAG 199409 Query 63513 CCTCCACTGGCACGAATATTACTAATTGATAGACCTATTCCCCCTGCCATTTTAGAGATT 63572 | ||| | | ||||| || || || ||| || || || || | || || || Sbjct 199408 GCACCAGTCGAGCGAATGTTGTGTATGTGTAAACCAATACCTCCAGCACTCTTGGAAATC 199349 Query 63573 AATGCGCATCGTTTTAACGTGTCATAGATGCCTTCTATGCTATCATCGATCATGTTAAGT 63632 || || ||| || || || ||||| || || || || |||||| |||| || Sbjct 199348 AAGGCACATGTCTTCAAGGTATCATAAATACCGTCAATAGAATCATCTTTCATAGCAATC 199289 Query 63633 AGAAAACAGCTAGACATTTG-GTGACGAGTAGTTCCCGCATTAAATAAGGTAGGAGAAGC 63691 | ||| || |||||||| | | | || || || |||||||| || ||||| || | Sbjct 199288 AAAAAGCACGAGGACATTTGAGGGTTGGGT-GTACCAGCATTAAACAAAGTAGGCGAGCC 199230 Query 63692 GTGCGTAAACCATTTTTCAGAAAGTAGATTGTACGTCTCAATAGCTGAGTCTATATCCCA 63751 ||| ||||| | | | || | | |||||| || ||||| || | || || Sbjct 199229 GTGGGTAAAGTGTCTCTGGGACATCATATTGTAAGTTTCAATGACTCTGGGAATGTCGTC 199170 Query 63752 TTGATGAATTCCTACTGCGACACGCATTAACATGTGCTGAGGTCTTTCAACAATTTTGTT 63811 |||||| || | || || | ||| | | ||||||||||||||| | | |||| Sbjct 199169 ACCATGAATACCAATGGCAACTCTCATAATTAAGTGCTGAGGTCTTTCTGCGACTTTGCC 199110 Query 63812 GTTTATTTTCAACAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAA 63871 || ||| | || | ||| ||| | || |||||||| |||||||| || ||||| ||| Sbjct 199109 ATTAATTCTTAAAAGGTAAGATCTCTCTAAAGTTTTGAAACCAAAGTAATTGTAGTTAAA 199050 Query 63872 GTCTCGTTCGTAAATAATAACCGAATTGAGCTTATCCTTATATTTGTTAACTATATC-CA 63930 || || || | | ||| | || | | | ||| || ||| ||| || || | Sbjct 199049 ATCACGATCAAATACAATTGCAGAGTCCAAGTCATCAGCGTACTTGGTAATAATGTCGTA 198990 Query 63931 TGGTAATACT-TGAAATAATCGGAGAATGTTTCCCATTTTTAGGATTAACATAGTTGAAT 63989 || | | || || || || || || || ||| |||| || |||||||||| | Sbjct 198989 TGTT--TCCTGGGAGATCATAGGGGAGTGCAAACCAGTTTTGGGGTTAACATAGTCATAC 198932 Query 63990 AAATCCT--CCATCACTTCACTAAATAGtttttttGTTTCCTTGTGTAGATTTGATATGG 64047 || |||| | | ||||| | ||| | ||| | |||| ||||| | || || | | Sbjct 198931 AACTCCTTACTAACACTTGA--AAACTGCTTTGTAGTTTGTTTGTGCAAGTTAGAAACAG 198874 Query 64048 CTATTCTGGCGGCTAGAATGGCATAATCCGGATGTTGTGTAGTACAAGT-GGCTGCTATT 64106 | ||||| || || | || |||||||| || || ||||| || || || || | Sbjct 198873 CAATTCTTGCTGCCAAGATAGCATAATCTGGGTGGATAGTAGT-CATGTATGCGGCAGTC 198815 Query 64107 TCGGCTGCCAGAGTGTCCAATTCTACCGTTGTTACTCCATTATATATTCCTTGAATAACC 64166 || ||||| | | || | || | || || || || | || | ||| |||||| Sbjct 198814 TCTGCTGCTAAGTTATCAAGCTCAATAGTGGTAACACCTTGGTACACACCTGAAATAACT 198755 Query 64167 TTCATAGCTATTTTAATAGGATCTATATGATCCGTGTTTAAGCCATAGCACAAT-TTTCT 64225 | || |||| | | ||| | |||| | || ||||||||| || ||| | | | Sbjct 198754 CTTTGAGTGATTTGCACGGCATCAACGTGATTGGAGTCTAAGCCATAACATAATCTCTGT 198695 Query 64226 AATACGAGACGTGATTTTATCAAACATGACATTTTCCTTGTATCCATTTCGTTTAATGAC 64285 | | | || || ||||||||||| |||| || ||| |||| || ||||| || Sbjct 198694 ACT-CTAGCAGTAATTTTATCAAAACGGACAGGCTCTTTGCGACCATGTCTTTTAACCAC 198636 Query 64286 AAACATTTT 64294 | ||||||| Sbjct 198635 ATACATTTT 198627 Score = 224 bits (248), Expect = 1e-53 Identities = 600/905 (66%), Gaps = 19/905 (2%) Strand=Plus/Minus Query 33270 TCTTGAGACATAACTCCCATTTTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTT 33329 |||| || |||||| || |||||||| |||| || | ||||||||||| || || Sbjct 233338 TCTT-AGCCATAACACCAGCCTTTTGGTAGTCACTAACTCTCTTTTCGAAAAAGTTGGTC 233280 Query 33330 TTTCCTTCCAATGATATATTTTCCATGAAATCAAACGGATTGGTAACATTGTAAAttttt 33389 |||||| |||| || || |||||||| || ||||| ||||| ||||||||||||| ||| Sbjct 233279 TTTCCTGCCAACGAAATGTTTTCCATAAAGTCAAAGGGATTAGTAACATTGTAAACCTTT 233220 Query 33390 ttAAATCCCAATTCAGAAATCAATCTATCTGCGACGAATTCTATATATGTTTTCATCATT 33449 | || ||| | || ||||| || || || || || | || ||||| | Sbjct 233219 TCGTTGCCTAATGCGACAAGTAATCTGTCGGCAACAAACTCCACGTACTGGCACATCAAT 233160 Query 33450 TCACAATTCATTCCTATGAGTTTAACTGGAAGAGCCACAGTAAGAAATTCTTGTTCAATG 33509 | ||| ||||| || | | || || | ||| |||| | ||| || | |||||| Sbjct 233159 TTACAGTTCATACCCAACAACGAAATAGGCAAAGCATCAGTGAAAAACTCCTTTTCAATA 233100 Query 33510 GATACCGCATTTGTTATAATAAATCTA-ACGGTTTCTTCACTCGGTGGATGTAAT--AAA 33566 | || || | ||| ||||| ||| || | | || |||| | ||| | || Sbjct 233099 GCAACGGCCTCTGTGATAATCT-TCTCGACAATAGCAGCA-TCGG-GTCTGTTTTGCAAG 233043 Query 33567 TGTTTAAACATCAAACATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAATTCG 33626 || || | ||| || || |||||| ||||| |||||| || | | ||||| ||| Sbjct 233042 TGGGAGAATAACAAGCAAGCAAAATCGGTGTGCAAACCCTCATCACGGCAGATTAACTCG 232983 Query 33627 TTAGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAAT 33686 || || || || | || ||||| | ||| | ||| || | |||||| ||||| || || Sbjct 232982 TTGGAGAAAGTCAAACCAGGCATCAAGCCTCTCTTCTTCAACCAAAAGATGGATGCAAAC 232923 Query 33687 GATCCGGAAAAGAAGATTCCTTCTACTGCAGCAAAGGCAATAAGTCTCTCTCCATAACCG 33746 ||||| ||||| || ||||| || |||||||| |||| ||| | || ||| | | Sbjct 232922 GATCCACTGAAGAAAATACCTTCAACAGCAGCAAATGCAACAAGACGTTCGCCAAATAAG 232863 Query 33747 GCGCTGTCATGT---ATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATC 33803 || ||||| ||||| | |||||| || ||||||||||| | ||||| || Sbjct 232862 GCCTCGTCATCACTGATCCAGCGTAAAGCCCAGTCAGCCTTCTTTTTGATGCAAGGAATA 232803 Query 33804 GTTTCTATGGCATTAAAGAGATAGtttttttCATTACTATCTTTAACATAAGTATCGATC 33863 || || || ||||| || | | ||| | || || || || | ||| || |||||| Sbjct 232802 GTCTCAATAGCATTGAATAAAAAGTCTGCCTCCTTGGGGTCCTTGATATAGGTGTCGATC 232743 Query 33864 AAAAGACTATACATTTCCGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACAT 33923 || | || | || || || || ||||| || || || || ||||| || ||| Sbjct 232742 AACAAGGAGTAGGTCTCTGAGTGGATATTTTCCATCATGATTTGGAAACCGTAAAAGCAT 232683 Query 33924 CTAGCCTCGGTAATCTGCACTTCTGTACAAAATCGTTCT--GCTAAATTTTCATTCACTA 33981 | || || | |||||| || || | | | || ||||| | || || || || || | Sbjct 232682 TTGGCTTCTGGAATCTGAACCTCGGCAGAGAA--GTTCTCCACCAAGTTCTCGTTAACAA 232625 Query 33982 TTCCATCACTGGCTGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTCTGGTG 34041 | ||||| || || ||||| ||||| | | | || || | |||| || | Sbjct 232624 TACCATCGGAAGCAGCGAAAAATGCCAAAATACGGGAAATGAAGAAACGCTCGT-TGTCG 232566 Query 34042 TT----AGTTTATTCCAATCATTGATATCTTTAGATATATCCACTTCTTCCACTGTCCAA 34097 || | || ||||| |||| | ||||| | ||| | ||| || | |||||| Sbjct 232565 TTCAAGCGATTGTTCCAGTCATGAGTGTCTTTTCCCAAATCGATTTCCTCTGCAGTCCAA 232506 Query 34098 AATGATGCCTCTGCCTTTTTATACATATTCCAGATGTCATGATATTGGATTGGGAAAATA 34157 || ||||| ||||| || || ||||| | ||| || || || |||| || ||||||| | Sbjct 232505 AAAGATGCTTCTGCTTTCTTGTACATTTGCCAAATCTCGTGGTATTTAATAGGGAAAAGA 232446 Query 34158 ACAAA 34162 ||||| Sbjct 232445 ACAAA 232441 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 629817442545600