Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Wickerhamia_20fluorescens_20[genbank_20GCA_5F001599155.1_202016-03-
01] 20 sequences; 13,178,500 total letters
Query= NC_003310.1
Length=196858
Score E
Sequences producing significant alignments: (Bits) Value
seq1 271 1e-67
>seq1
Length=2974285
Score = 271 bits (300), Expect = 1e-67
Identities = 1449/2289 (63%), Gaps = 51/2289 (2%)
Strand=Plus/Minus
Query 62039 GTCCAATGTGAATTGAATGGGAGCGGATGCGGGTTTCGTACGTAGATAGTACATTCCCGT 62098
||| | ||||||||| |||| ||| || || | | || | | |||||||| || ||
Sbjct 200897 GTCTACTGTGAATTGGATGGCAGCCGAGGCAGCCTGGGTTCTCAAGTAGTACATACCTGT 200838
Query 62099 TTTTAGACCGAGACTCCATCCGTAAAAATGCATACTCGTTAGTTTGGAATAACTCGGATC 62158
||| || || |||| |||||||||||||| |||| ||| | |||||
Sbjct 200837 TTTGAGTCCCTTCTTCCAACCGTAAAAATGCATCGAGGTTAATTTACCCATTGTAGGATC 200778
Query 62159 TGCTATATGGATATTCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCCAT 62218
|| ||||| |||| ||| || |||||| |||||||| | | ||||||||||||
Sbjct 200777 CTTGATGTGGATGTTCAAAGACTGGGATTGATCAATGAAGGCGGCACGGTCTGCAGCCAT 200718
Query 62219 TTTTATGATCGTCTTT-TGTGCAATTTCCCAAATAGTTTTATA-AACTCGCTTAATATCT 62276
| || || || ||| || | |||||||| | || || || ||| | ||| | ||
Sbjct 200717 ATCAATAAT-GTGTTTCTGAGAGATTTCCCATACGGTCTTGTACAACGC-CTTGACTTCG 200660
Query 62277 TCTGGAAGGTTTGTATTC---TGAATGGATCCACCATCTACCATAATCCTATTCTTGATC 62333
|| || | ||| | | || || || || | || || | ||||| ||
Sbjct 200659 TCAGGGATGTTGGGCAACAGCTGGATCGAACCGTTGTTGGAAATGATGTTGTTCTTCATG 200600
Query 62334 TCATCATTCCATAATTTTCTC---TCGGTTAAAACTCTAAGGAGATGCGGGTTAACTACT 62390
|| ||||| | | | | || | | | | | | || ||||| || | |
Sbjct 200599 GAGTCGTTCCAGA---TACCCAAATCCACAAGATCGCGTAACAAATAAGGGTTGACAATT 200543
Query 62391 TGGAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCCACCGAC 62450
|||||||| |||| ||||||||| | | ||| ||||| || || ||||| | ||
Sbjct 200542 TGGAATTCACCAGCCAATACTCTTCTGGAGTAGATATTGGAAGTGTAGGGTTCAAAGCAC 200483
Query 62451 TCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAAACTA 62510
|| || || ||||| ||||| | ||| ||||| || ||||| || || |||||||| |
Sbjct 200482 TCGTTGTTACCCAATATTTGGGAAGTGGATGCCGTGGGCATGGGAGCAACCAATAACGAA 200423
Query 62511 TTTCTAAGACCGTATGTTCTG---ATTTTATCTTTTAGATGTTCCCAATTCCAAAGATCC 62567
||||||| ||| ||| | | ||||| |||| | ||| |||| | ||| | ||
Sbjct 200422 TTTCTAATACC--ATGCTTAGCCAATTTTTGCTTTAATGTGT-CCCAGTCCCACAACTCA 200366
Query 62568 GACGGTACAACANNNNNNNNNNNATATTGTAGAATACCGTTACTGGCGTACGATCCTACA 62627
|| | | |||| | ||| || ||| || || |
Sbjct 200365 CTGGGCTTTCTGTCCCAAAGATCAAACTGTAACAAACCCTTGGAGGCTGGAGACCCCTCG 200306
Query 62628 TATGTATCATATGGTCCTTCCTTCTCAGCTAGTTTACAACTCGCCTCTAATGCACCGTAA 62687
|| | || || | || || || || | || ||| || || | ||||||||
Sbjct 200305 TAACTTTCGTAAGAACCCTCGACCTGCGCCAATTCGATACTGGCTTCCACTGCACCGTGG 200246
Query 62688 TAAATGGTTTCAAAGATCTTCTTATTTAGATCTTGTGCTTCCGGGCTATCAAATGGATAA 62747
|| |||||||| || |||| |||| | ||| |||| | ||||| || |
Sbjct 200245 TACATGGTTTCGAAAATCTGAATATTCAATTCTCTAGCTTGTTGCGAGTCAAAGGGCAAT 200186
Query 62748 TTTAAGAGAATAAACGCGTCCGCTAATCCTTGAACACCAATACCGATAGGTCTATGTCTC 62807
| || ||||| || || || || || || ||||| | | || ||||||| |||
Sbjct 200185 CTCAATGCCATAAAAGCATCTGCCAAACCCTGCACACCCAATGCAATTGGTCTATTCCTC 200126
Query 62808 TTATTAGAGATTTCAGCTTCTGGAATAGGATAATAATTAATATCTATAATTTTATTGAGA 62867
| ||||| ||| |||||||||| || ||| | ||| ||| || ||| | || |
Sbjct 200125 ATGTTAGATCTTTTGGCTTCTGGAACGGGGTAAAAGTTACGATCAATGATTCTGTTCAAG 200066
Query 62868 TTTCTGACAATTACTTTGACCACATCCTTCAGTTTGAGAAAAT-------CAAATCGC-- 62918
|| | | || || ||| || || | || || ||| | ||| | |
Sbjct 200065 TTACGGGTAACAACCTTGGTAACTTCATGAAGCTTCTCAAAGTTGTACCACAAGTTGTTG 200006
Query 62919 CCATCTATT---ACAAACATGTTCAATGCAACAGATGCCAGATTACACACGGCTACCTCA 62975
| ||| || |||||| | | ||| | |||||||| ||||| || || ||||||
Sbjct 200005 CTGTCTTTTTCAACAAACGAGGGAAGTGCGATAGATGCCAAGTTACATACAGCAACCTCA 199946
Query 62976 TTAGCATCCGCATATTGTATTATCTCAGTGCAAAGATTACTACACTTGATAGTTCCTAAA 63035
| | | |||| | || ||| || | ||| | | ||||| || ||
Sbjct 199945 TCTGGCGAGGAGTATTCGACAATTTCACAACACAAATTGGAAGATTTGATGACACCCAAG 199886
Query 63036 TTTTGTTGATTACTCTTTTTGTTACACGCATCCTTATAAAGAATGAATGGAGTACCAGTT 63095
|| | ||||||| | ||||| || || ||||| || || | |||||||| ||||| |||
Sbjct 199885 TTCTTTTGATTAGTTTTTTTATTGCATGCATCTTTGTACAACATGAATGGGGTACCGGTT 199826
Query 63096 TCAATCTGAGATTCTATAATCGCTTTCCAGACGACTCGAGCCTTTATTATAGATTTGTAT 63155
|| | || | || | ||| || | ||| | ||||||| || | ||| |
Sbjct 199825 TCGGTTTGCGCCTCCAAAATGGCGTACCATAATTTCTGAGCCTTGATAGTC--TTTCTTC 199768
Query 63156 CTCC--TTTCTCTTTCGTATAGAGTATACAATCGTTCGAACTCGTCTCCCCAAACATTGT 63213
| | |||| | |||||| |||||| || ||||| || || |||||| |
Sbjct 199767 CACGGTTTTCACGTTCGTACTTCTCGTACAATGCCTCAAACTCATCACCGTAAACATCGG 199708
Query 63214 CCAATC-TAGGACATTCATCCGGACACATCAACGACCACTCTCCGTCATCCTTCACTCGT 63272
||| | | || | | ||| ||| | | ||| | |||||| | | | || ||||
Sbjct 199707 ACAAACCTTGGGCCT-CATTAGGAGAGAACAAGGTCCACTCAGCATTCTGCTCAACTCTC 199649
Query 63273 TTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTTGTTCTATGTTCCTCG 63332
|||||||| | ||||||||||| | ||| || | |||||||| || ||| ||
Sbjct 199648 TTCATAAACAAGTCAGGAATCCACAATGCTGGGAACAAATCTCTTGCCCTCATTTCTTCC 199589
Query 63333 TTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAG 63392
|| || ||||||| ||| ||||| ||| | | ||||| | ||||| ||||||||
Sbjct 199588 TTACCATGATTCTTTCTAATATCGATGAAATCAAAGATATCCGCGTGCCATGGTTCCAAA 199529
Query 63393 TATATGGCCATAACTCCAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTA 63452
|||| ||| | | || || | || || || |||||||| | ||| | ||| ||||||
Sbjct 199528 TATAAGGCAAATGCACCGGGTCTCTTATTACCACCCTGATCCACGTAACGAGCAGTGTTA 199469
Query 63453 TTATAAACTCTCAACATTGGAATAATACCGTTTGATATACCATTGGTACCGGAGATATAG 63512
|| ||||||| | ||| ||||| ||||| || || |||| |||||||| | || |||
Sbjct 199468 TTGAAAACTCTAACCATAGGAATGATACCATTAGAGGTACCGTTGGTACCAGCAATGTAG 199409
Query 63513 CCTCCACTGGCACGAATATTACTAATTGATAGACCTATTCCCCCTGCCATTTTAGAGATT 63572
| ||| | | ||||| || || || ||| || || || || | || || ||
Sbjct 199408 GCACCAGTCGAGCGAATGTTGTGTATGTGTAAACCAATACCTCCAGCACTCTTGGAAATC 199349
Query 63573 AATGCGCATCGTTTTAACGTGTCATAGATGCCTTCTATGCTATCATCGATCATGTTAAGT 63632
|| || ||| || || || ||||| || || || || |||||| |||| ||
Sbjct 199348 AAGGCACATGTCTTCAAGGTATCATAAATACCGTCAATAGAATCATCTTTCATAGCAATC 199289
Query 63633 AGAAAACAGCTAGACATTTG-GTGACGAGTAGTTCCCGCATTAAATAAGGTAGGAGAAGC 63691
| ||| || |||||||| | | | || || || |||||||| || ||||| || |
Sbjct 199288 AAAAAGCACGAGGACATTTGAGGGTTGGGT-GTACCAGCATTAAACAAAGTAGGCGAGCC 199230
Query 63692 GTGCGTAAACCATTTTTCAGAAAGTAGATTGTACGTCTCAATAGCTGAGTCTATATCCCA 63751
||| ||||| | | | || | | |||||| || ||||| || | || ||
Sbjct 199229 GTGGGTAAAGTGTCTCTGGGACATCATATTGTAAGTTTCAATGACTCTGGGAATGTCGTC 199170
Query 63752 TTGATGAATTCCTACTGCGACACGCATTAACATGTGCTGAGGTCTTTCAACAATTTTGTT 63811
|||||| || | || || | ||| | | ||||||||||||||| | | ||||
Sbjct 199169 ACCATGAATACCAATGGCAACTCTCATAATTAAGTGCTGAGGTCTTTCTGCGACTTTGCC 199110
Query 63812 GTTTATTTTCAACAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAA 63871
|| ||| | || | ||| ||| | || |||||||| |||||||| || ||||| |||
Sbjct 199109 ATTAATTCTTAAAAGGTAAGATCTCTCTAAAGTTTTGAAACCAAAGTAATTGTAGTTAAA 199050
Query 63872 GTCTCGTTCGTAAATAATAACCGAATTGAGCTTATCCTTATATTTGTTAACTATATC-CA 63930
|| || || | | ||| | || | | | ||| || ||| ||| || || |
Sbjct 199049 ATCACGATCAAATACAATTGCAGAGTCCAAGTCATCAGCGTACTTGGTAATAATGTCGTA 198990
Query 63931 TGGTAATACT-TGAAATAATCGGAGAATGTTTCCCATTTTTAGGATTAACATAGTTGAAT 63989
|| | | || || || || || || || ||| |||| || |||||||||| |
Sbjct 198989 TGTT--TCCTGGGAGATCATAGGGGAGTGCAAACCAGTTTTGGGGTTAACATAGTCATAC 198932
Query 63990 AAATCCT--CCATCACTTCACTAAATAGtttttttGTTTCCTTGTGTAGATTTGATATGG 64047
|| |||| | | ||||| | ||| | ||| | |||| ||||| | || || | |
Sbjct 198931 AACTCCTTACTAACACTTGA--AAACTGCTTTGTAGTTTGTTTGTGCAAGTTAGAAACAG 198874
Query 64048 CTATTCTGGCGGCTAGAATGGCATAATCCGGATGTTGTGTAGTACAAGT-GGCTGCTATT 64106
| ||||| || || | || |||||||| || || ||||| || || || || |
Sbjct 198873 CAATTCTTGCTGCCAAGATAGCATAATCTGGGTGGATAGTAGT-CATGTATGCGGCAGTC 198815
Query 64107 TCGGCTGCCAGAGTGTCCAATTCTACCGTTGTTACTCCATTATATATTCCTTGAATAACC 64166
|| ||||| | | || | || | || || || || | || | ||| ||||||
Sbjct 198814 TCTGCTGCTAAGTTATCAAGCTCAATAGTGGTAACACCTTGGTACACACCTGAAATAACT 198755
Query 64167 TTCATAGCTATTTTAATAGGATCTATATGATCCGTGTTTAAGCCATAGCACAAT-TTTCT 64225
| || |||| | | ||| | |||| | || ||||||||| || ||| | | |
Sbjct 198754 CTTTGAGTGATTTGCACGGCATCAACGTGATTGGAGTCTAAGCCATAACATAATCTCTGT 198695
Query 64226 AATACGAGACGTGATTTTATCAAACATGACATTTTCCTTGTATCCATTTCGTTTAATGAC 64285
| | | || || ||||||||||| |||| || ||| |||| || ||||| ||
Sbjct 198694 ACT-CTAGCAGTAATTTTATCAAAACGGACAGGCTCTTTGCGACCATGTCTTTTAACCAC 198636
Query 64286 AAACATTTT 64294
| |||||||
Sbjct 198635 ATACATTTT 198627
Score = 224 bits (248), Expect = 1e-53
Identities = 600/905 (66%), Gaps = 19/905 (2%)
Strand=Plus/Minus
Query 33270 TCTTGAGACATAACTCCCATTTTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTT 33329
|||| || |||||| || |||||||| |||| || | ||||||||||| || ||
Sbjct 233338 TCTT-AGCCATAACACCAGCCTTTTGGTAGTCACTAACTCTCTTTTCGAAAAAGTTGGTC 233280
Query 33330 TTTCCTTCCAATGATATATTTTCCATGAAATCAAACGGATTGGTAACATTGTAAAttttt 33389
|||||| |||| || || |||||||| || ||||| ||||| ||||||||||||| |||
Sbjct 233279 TTTCCTGCCAACGAAATGTTTTCCATAAAGTCAAAGGGATTAGTAACATTGTAAACCTTT 233220
Query 33390 ttAAATCCCAATTCAGAAATCAATCTATCTGCGACGAATTCTATATATGTTTTCATCATT 33449
| || ||| | || ||||| || || || || || | || ||||| |
Sbjct 233219 TCGTTGCCTAATGCGACAAGTAATCTGTCGGCAACAAACTCCACGTACTGGCACATCAAT 233160
Query 33450 TCACAATTCATTCCTATGAGTTTAACTGGAAGAGCCACAGTAAGAAATTCTTGTTCAATG 33509
| ||| ||||| || | | || || | ||| |||| | ||| || | ||||||
Sbjct 233159 TTACAGTTCATACCCAACAACGAAATAGGCAAAGCATCAGTGAAAAACTCCTTTTCAATA 233100
Query 33510 GATACCGCATTTGTTATAATAAATCTA-ACGGTTTCTTCACTCGGTGGATGTAAT--AAA 33566
| || || | ||| ||||| ||| || | | || |||| | ||| | ||
Sbjct 233099 GCAACGGCCTCTGTGATAATCT-TCTCGACAATAGCAGCA-TCGG-GTCTGTTTTGCAAG 233043
Query 33567 TGTTTAAACATCAAACATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAATTCG 33626
|| || | ||| || || |||||| ||||| |||||| || | | ||||| |||
Sbjct 233042 TGGGAGAATAACAAGCAAGCAAAATCGGTGTGCAAACCCTCATCACGGCAGATTAACTCG 232983
Query 33627 TTAGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAAT 33686
|| || || || | || ||||| | ||| | ||| || | |||||| ||||| || ||
Sbjct 232982 TTGGAGAAAGTCAAACCAGGCATCAAGCCTCTCTTCTTCAACCAAAAGATGGATGCAAAC 232923
Query 33687 GATCCGGAAAAGAAGATTCCTTCTACTGCAGCAAAGGCAATAAGTCTCTCTCCATAACCG 33746
||||| ||||| || ||||| || |||||||| |||| ||| | || ||| | |
Sbjct 232922 GATCCACTGAAGAAAATACCTTCAACAGCAGCAAATGCAACAAGACGTTCGCCAAATAAG 232863
Query 33747 GCGCTGTCATGT---ATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATC 33803
|| ||||| ||||| | |||||| || ||||||||||| | ||||| ||
Sbjct 232862 GCCTCGTCATCACTGATCCAGCGTAAAGCCCAGTCAGCCTTCTTTTTGATGCAAGGAATA 232803
Query 33804 GTTTCTATGGCATTAAAGAGATAGtttttttCATTACTATCTTTAACATAAGTATCGATC 33863
|| || || ||||| || | | ||| | || || || || | ||| || ||||||
Sbjct 232802 GTCTCAATAGCATTGAATAAAAAGTCTGCCTCCTTGGGGTCCTTGATATAGGTGTCGATC 232743
Query 33864 AAAAGACTATACATTTCCGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACAT 33923
|| | || | || || || || ||||| || || || || ||||| || |||
Sbjct 232742 AACAAGGAGTAGGTCTCTGAGTGGATATTTTCCATCATGATTTGGAAACCGTAAAAGCAT 232683
Query 33924 CTAGCCTCGGTAATCTGCACTTCTGTACAAAATCGTTCT--GCTAAATTTTCATTCACTA 33981
| || || | |||||| || || | | | || ||||| | || || || || || |
Sbjct 232682 TTGGCTTCTGGAATCTGAACCTCGGCAGAGAA--GTTCTCCACCAAGTTCTCGTTAACAA 232625
Query 33982 TTCCATCACTGGCTGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTCTGGTG 34041
| ||||| || || ||||| ||||| | | | || || | |||| || |
Sbjct 232624 TACCATCGGAAGCAGCGAAAAATGCCAAAATACGGGAAATGAAGAAACGCTCGT-TGTCG 232566
Query 34042 TT----AGTTTATTCCAATCATTGATATCTTTAGATATATCCACTTCTTCCACTGTCCAA 34097
|| | || ||||| |||| | ||||| | ||| | ||| || | ||||||
Sbjct 232565 TTCAAGCGATTGTTCCAGTCATGAGTGTCTTTTCCCAAATCGATTTCCTCTGCAGTCCAA 232506
Query 34098 AATGATGCCTCTGCCTTTTTATACATATTCCAGATGTCATGATATTGGATTGGGAAAATA 34157
|| ||||| ||||| || || ||||| | ||| || || || |||| || ||||||| |
Sbjct 232505 AAAGATGCTTCTGCTTTCTTGTACATTTGCCAAATCTCGTGGTATTTAATAGGGAAAAGA 232446
Query 34158 ACAAA 34162
|||||
Sbjct 232445 ACAAA 232441
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 629817442545600
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