Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Wickerhamia_20fluorescens_20[genbank_20GCA_5F001599155.1_202016-03- 01] 20 sequences; 13,178,500 total letters Query= NC_003391.1 Length=205719 Score E Sequences producing significant alignments: (Bits) Value seq1 295 9e-75 seq5 120 4e-22 >seq1 Length=2974285 Score = 295 bits (326), Expect = 9e-75 Identities = 1449/2287 (63%), Gaps = 47/2287 (2%) Strand=Plus/Minus Query 64832 GTCCAATGTGAATTGAATGGGAGCGGATGCGGGTTTCGTACGTAGATAGTACATTCCCGT 64891 ||| | ||||||||| |||| ||| || || | | || | | |||||||| || || Sbjct 200897 GTCTACTGTGAATTGGATGGCAGCCGAGGCAGCCTGGGTTCTCAAGTAGTACATACCTGT 200838 Query 64892 TTTTAGACCGAGACTCCATCCGTAAAAATGCATACTCGTTAGTTTGGAATAACTCGGATC 64951 ||| || || |||| |||||||||||||| |||| ||| | ||||| Sbjct 200837 TTTGAGTCCCTTCTTCCAACCGTAAAAATGCATCGAGGTTAATTTACCCATTGTAGGATC 200778 Query 64952 TGCTATATGGATATTCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCCAT 65011 || ||||| |||| ||| || |||||| |||||||| | | |||||||||||| Sbjct 200777 CTTGATGTGGATGTTCAAAGACTGGGATTGATCAATGAAGGCGGCACGGTCTGCAGCCAT 200718 Query 65012 TTTTATGATCGTCTTT-TGTGGAATTTCCCAAATAGTTTTATA-AACTCGCTTAATATCT 65069 | || || || ||| || | |||||||| | || || || ||| | ||| | || Sbjct 200717 ATCAATAAT-GTGTTTCTGAGAGATTTCCCATACGGTCTTGTACAACGC-CTTGACTTCG 200660 Query 65070 TCTGGAAGGTTTGTATTC---TGAATGGATCCACCATCTGCCATAATCCTATTCTTGATC 65126 || || | ||| | | || || || || | | || || | ||||| || Sbjct 200659 TCAGGGATGTTGGGCAACAGCTGGATCGAACCGTTGTTGGAAATGATGTTGTTCTTCATG 200600 Query 65127 TCATCATTCCATAATTTTCTC---TCGGTTAAAACTCTAAGGAGATGCGGATTAACTACT 65183 || ||||| | | | | || | | | | | | || || || || | | Sbjct 200599 GAGTCGTTCCAGA---TACCCAAATCCACAAGATCGCGTAACAAATAAGGGTTGACAATT 200543 Query 65184 TGAAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCCACAGAC 65243 || ||||| |||| ||||||||| | | ||| ||||| || || ||||| | || Sbjct 200542 TGGAATTCACCAGCCAATACTCTTCTGGAGTAGATATTGGAAGTGTAGGGTTCAAAGCAC 200483 Query 65244 TCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAAACTA 65303 || || || ||||| ||||| | ||| ||||| || ||||| || || |||||||| | Sbjct 200482 TCGTTGTTACCCAATATTTGGGAAGTGGATGCCGTGGGCATGGGAGCAACCAATAACGAA 200423 Query 65304 TTTCTAAGACCGTATGTTCTG--ATTTTATCTTTTAGAGGTTCCCAATTCCAAAGATCCG 65361 ||||||| ||| ||| | | | ||| | |||| | ||||| | ||| | || Sbjct 200422 TTTCTAATACC--ATGCTTAGCCAATTTTTGCTTTAATGTGTCCCAGTCCCACAACTCAC 200365 Query 65362 ACGGTACAACNNNNNNNNNNNNNNNTTGTAGAATACCGTTACTGGCGTACGATCCTACAT 65421 || |||| | ||| || ||| || || | | Sbjct 200364 TGGGCTTTCTGTCCCAAAGATCAAACTGTAACAAACCCTTGGAGGCTGGAGACCCCTCGT 200305 Query 65422 ATGTATCGTATGGTCCTTCCTTCTCAGCTAGTTCACAACTCGCCTCTAATGCACCGTAAT 65481 | | ||||| | || || || || | ||| ||| || || | |||||||| | Sbjct 200304 AACTTTCGTAAGAACCCTCGACCTGCGCCAATTCGATACTGGCTTCCACTGCACCGTGGT 200245 Query 65482 AAATGGTTTCGAAGATCTTCTTATTTAGATCTTGTGCTTCCAGGCTATCAAATGGATAAT 65541 | ||||||||||| |||| |||| | ||| |||| | ||||| || | Sbjct 200244 ACATGGTTTCGAAAATCTGAATATTCAATTCTCTAGCTTGTTGCGAGTCAAAGGGCAATC 200185 Query 65542 TTAAGAGAATAAACGCGTCTGCTAATCCTTGAACACCAATACCGATAGGTCTATGTCTCT 65601 | || ||||| || ||||| || || || ||||| | | || ||||||| ||| Sbjct 200184 TCAATGCCATAAAAGCATCTGCCAAACCCTGCACACCCAATGCAATTGGTCTATTCCTCA 200125 Query 65602 TATTAGAGATTTCAGCTTCTGGAATAGGATAATAATTAATATCTATAATTTTATTGAGAT 65661 | ||||| ||| |||||||||| || ||| | ||| ||| || ||| | || | | Sbjct 200124 TGTTAGATCTTTTGGCTTCTGGAACGGGGTAAAAGTTACGATCAATGATTCTGTTCAAGT 200065 Query 65662 TTCTGACAATTACTTTGACCACATCCTTCAGTTTGAGAAAAT-------CAAATCGCTCA 65714 | | | || || ||| || || | || || ||| | ||| | | | Sbjct 200064 TACGGGTAACAACCTTGGTAACTTCATGAAGCTTCTCAAAGTTGTACCACAAGTTGTTGC 200005 Query 65715 TCTATT-----ACAAACATGTTCAATGCAACAGATGCCAGATTACAAACGGCTACCTCAT 65769 | | || |||||| | | ||| | |||||||| ||||| || || ||||||| Sbjct 200004 TGTCTTTTTCAACAAACGAGGGAAGTGCGATAGATGCCAAGTTACATACAGCAACCTCAT 199945 Query 65770 TAGCATCCGCATATTGTATTATCTCAGTGCAAAGATTACTACACTTGATGGTTCCTAAAT 65829 | | |||| | || ||| || | ||| | | |||||| || || | Sbjct 199944 CTGGCGAGGAGTATTCGACAATTTCACAACACAAATTGGAAGATTTGATGACACCCAAGT 199885 Query 65830 TTTGTTGATTACTCTTTTTGTTACACGCATCCTTATAAAGAATGAATGGAGTACCAGTTT 65889 | | ||||||| | ||||| || || ||||| || || | |||||||| ||||| |||| Sbjct 199884 TCTTTTGATTAGTTTTTTTATTGCATGCATCTTTGTACAACATGAATGGGGTACCGGTTT 199825 Query 65890 CAATCTGAGATTCTATAATCGCTTTCCAGACGACTCGAGCCTTTATTATAGATTTGTATC 65949 | | || | || | ||| || | ||| | ||||||| || | ||| | | Sbjct 199824 CGGTTTGCGCCTCCAAAATGGCGTACCATAATTTCTGAGCCTTGATAGTC--TTTCTTCC 199767 Query 65950 TC--TTTTCTCTTTCGTATAGTGTATACAATCGTTCGAACTCGTCTCCCCAAACATTGTC 66007 | ||||| | |||||| |||||| || ||||| || || |||||| | Sbjct 199766 ACGGTTTTCACGTTCGTACTTCTCGTACAATGCCTCAAACTCATCACCGTAAACATCGGA 199707 Query 66008 CAATCCAGGACATTCATCCGGACACATCAACGACCACTCTCCGTCATCCTTCACTCGTTT 66067 ||| || | |||| ||| | | ||| | |||||| | | | || |||| || Sbjct 199706 CAAACCTTGGGCCTCATTAGGAGAGAACAAGGTCCACTCAGCATTCTGCTCAACTCTCTT 199647 Query 66068 CATAAAGAGATCAGGAATCCAAAGAGCTATAAATAAATCTCTGGTTCTATGTTCCTCGTT 66127 |||||| | ||||||||||| | ||| || |||||||| | || ||| || || Sbjct 199646 CATAAACAAGTCAGGAATCCACAATGCTGGGAACAAATCTCTTGCCCTCATTTCTTCCTT 199587 Query 66128 TCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCATAATGCCACGGTTCCAAGTA 66187 || ||||||| ||| ||||| ||| | | ||||| ||||| |||||||| || Sbjct 199586 ACCATGATTCTTTCTAATATCGATGAAATCAAAGATATCCGCGTGCCATGGTTCCAAATA 199527 Query 66188 TATGGCCATAACTCCAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATT 66247 || ||| | | || || | || || || |||||||| | ||| | ||| |||||||| Sbjct 199526 TAAGGCAAATGCACCGGGTCTCTTATTACCACCCTGATCCACGTAACGAGCAGTGTTATT 199467 Query 66248 ATAAACTCTCAACATTGGAATAATACCATTGGATGTACCATTGGTCCCGGAGATATAGCT 66307 ||||||| | ||| ||||| |||||||| || ||||| ||||| || | || ||| Sbjct 199466 GAAAACTCTAACCATAGGAATGATACCATTAGAGGTACCGTTGGTACCAGCAATGTAGGC 199407 Query 66308 TCCACTTGCACGAATATTACTAATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAA 66367 ||| | | ||||| || || || ||| || || || || | || || || || Sbjct 199406 ACCAGTCGAGCGAATGTTGTGTATGTGTAAACCAATACCTCCAGCACTCTTGGAAATCAA 199347 Query 66368 TGCGCATCGTTTTAACGTATCATAGATGCCCTCTATACTATCATCCATCATGTTAAGTAG 66427 || ||| || || |||||||| || || || ||| |||||| |||| || | Sbjct 199346 GGCACATGTCTTCAAGGTATCATAAATACCGTCAATAGAATCATCTTTCATAGCAATCAA 199287 Query 66428 AAAACAGCTAGACATTTG-GTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGT 66486 ||| || |||||||| | | | | || || |||||||| || ||||| || ||| Sbjct 199286 AAAGCACGAGGACATTTGAGGGTTGGGT-GTACCAGCATTAAACAAAGTAGGCGAGCCGT 199228 Query 66487 GCGTAAACCATTTTTCAGAAAGTAGATTGTACGTCTCAATAGCTGAGTCTATATCCCATT 66546 | ||||| | | | || | | |||||| || ||||| || | || || Sbjct 199227 GGGTAAAGTGTCTCTGGGACATCATATTGTAAGTTTCAATGACTCTGGGAATGTCGTCAC 199168 Query 66547 GATGAATTCCTACTGCGACACGCATTAACATGTGCTGAGGTCTTTCAACGATCTTGTTGT 66606 |||||| || | || || | ||| | | ||||||||||||||| ||| ||| | Sbjct 199167 CATGAATACCAATGGCAACTCTCATAATTAAGTGCTGAGGTCTTTCTGCGACTTTGCCAT 199108 Query 66607 TTATTTTCAACAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGT 66666 | ||| | || | ||| ||| | || |||||||| |||||||| || ||||| ||| | Sbjct 199107 TAATTCTTAAAAGGTAAGATCTCTCTAAAGTTTTGAAACCAAAGTAATTGTAGTTAAAAT 199048 Query 66667 CTCGTTCGTAAATAATAACCGAGTTGAGTTTATCCTTATATTTGTTAACTACATC-CATG 66725 | || || | | ||| | |||| | | ||| || ||| ||| | || ||| Sbjct 199047 CACGATCAAATACAATTGCAGAGTCCAAGTCATCAGCGTACTTGGTAATAATGTCGTATG 198988 Query 66726 GTAATACT-TGAAATAATCGGAGAATGTTTCCCATTTTTAGGATTGACATAGTTGAATAA 66784 | | || || || || || || || ||| |||| || || ||||||| | || Sbjct 198987 TT--TCCTGGGAGATCATAGGGGAGTGCAAACCAGTTTTGGGGTTAACATAGTCATACAA 198930 Query 66785 ATCCT--CCATCACTTCACTAAATAGtttttttGTTTCTTTGTGTAGATTTGATACGGCT 66842 |||| | | ||||| | ||| | ||| | |||| |||||| | || || || || Sbjct 198929 CTCCTTACTAACACTTGA--AAACTGCTTTGTAGTTTGTTTGTGCAAGTTAGAAACAGCA 198872 Query 66843 ATTCTAGCGGCTATAATGGCATAATCCGGATGTTGTGTAGTACAAGT-GGCTGCTATTTC 66901 ||||| || || | || |||||||| || || ||||| || || || || | || Sbjct 198871 ATTCTTGCTGCCAAGATAGCATAATCTGGGTGGATAGTAGT-CATGTATGCGGCAGTCTC 198813 Query 66902 GGCTGCCAGAGTGTCCAATTCTACCGTTGTTACTCCATTATATATTCCTTGGATAACCTT 66961 ||||| | | || | || | || || || || | || | ||| ||||| | Sbjct 198812 TGCTGCTAAGTTATCAAGCTCAATAGTGGTAACACCTTGGTACACACCTGAAATAACTCT 198753 Query 66962 CATAGCTATTTTAATAGGATCTATATGATCAGTGTTTAAGCCATAACATAAT-TTTCTAA 67020 || |||| | | ||| | |||| | || |||||||||||||||| | | || Sbjct 198752 TTGAGTGATTTGCACGGCATCAACGTGATTGGAGTCTAAGCCATAACATAATCTCTGTAC 198693 Query 67021 TACGAGATGTGATTTTATCAAACATGACATTTTCCTTGTATCCATTTCGTTTAATGACAA 67080 | | || || ||||||||||| |||| || ||| |||| || ||||| ||| Sbjct 198692 T-CTAGCAGTAATTTTATCAAAACGGACAGGCTCTTTGCGACCATGTCTTTTAACCACAT 198634 Query 67081 ACATTTT 67087 ||||||| Sbjct 198633 ACATTTT 198627 Score = 219 bits (242), Expect = 6e-52 Identities = 593/901 (66%), Gaps = 11/901 (1%) Strand=Plus/Minus Query 35846 TCTTGAGACATAACTCCCATTTTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTT 35905 |||| || |||||| || |||||||| |||| || | ||||||||||| || || Sbjct 233338 TCTT-AGCCATAACACCAGCCTTTTGGTAGTCACTAACTCTCTTTTCGAAAAAGTTGGTC 233280 Query 35906 TTACCTTCTAATGATATATTTTCCATGAAATCGAATGGATTGATAACATTATAAAttttt 35965 || ||| | || || || |||||||| || || || ||||| ||||||| |||| ||| Sbjct 233279 TTTCCTGCCAACGAAATGTTTTCCATAAAGTCAAAGGGATTAGTAACATTGTAAACCTTT 233220 Query 35966 ttAAATCCCAATTCAGAAATCAATCTATCTGCGACAAATTCTATATATGTTTTCATCATT 36025 | || ||| | || ||||| || || ||||| || | || ||||| | Sbjct 233219 TCGTTGCCTAATGCGACAAGTAATCTGTCGGCAACAAACTCCACGTACTGGCACATCAAT 233160 Query 36026 TCACAATTCATTCCTATAAGTTTAACTGGAAGAGCCACAGTAAGAAATTCTTGTTCAATA 36085 | ||| ||||| || | | || || | ||| |||| | ||| || | ||||||| Sbjct 233159 TTACAGTTCATACCCAACAACGAAATAGGCAAAGCATCAGTGAAAAACTCCTTTTCAATA 233100 Query 36086 GAGACCGCGTCTGTTATAATAGATATTACTGTTTCTTCACTCGGTGGATACAATAAATGT 36145 | || || ||||| ||||| || | | || ||| | || || Sbjct 233099 GCAACGGCCTCTGTGATAATCTTCTCGACAATAGCAGCATCGGGTCTGTTTTGCAAGTGG 233040 Query 36146 TTAAACATCAAACATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTG 36205 || | ||| || || |||||| ||| | |||||| || | | ||||| |||||| Sbjct 233039 GAGAATAACAAGCAAGCAAAATCGGTGTGCAAACCCTCATCACGGCAGATTAACTCGTTG 232980 Query 36206 GAAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGAT 36265 || || || | || ||||| | ||| | ||| || | |||||| ||||| ||||| ||| Sbjct 232979 GAGAAAGTCAAACCAGGCATCAAGCCTCTCTTCTTCAACCAAAAGATGGATGCAAACGAT 232920 Query 36266 CCAGAAAAGAAAATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATAACCGGCA 36325 ||| |||||||| ||||| || || ||||| |||| ||| | || ||| | ||| Sbjct 232919 CCACTGAAGAAAATACCTTCAACAGCAGCAAATGCAACAAGACGTTCGCCAAATAAGGCC 232860 Query 36326 CTGTCATGT---ATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATTGTC 36382 ||||| ||||| | |||||| || ||||||||||| | ||||| || ||| Sbjct 232859 TCGTCATCACTGATCCAGCGTAAAGCCCAGTCAGCCTTCTTTTTGATGCAAGGAATAGTC 232800 Query 36383 TCTATAGCATTAAAGAGATAGtttttttCATTACTATCTTTAACATATGTATCAATCAAA 36442 || |||||||| || | | ||| | || || || || | ||| || || ||||| Sbjct 232799 TCAATAGCATTGAATAAAAAGTCTGCCTCCTTGGGGTCCTTGATATAGGTGTCGATCAAC 232740 Query 36443 AGACTATACATTTCCGAATGAATGTTTTCAATGGCCATTTGAAATCCGTAGAAACATCTA 36502 | || | || || || || ||||| || ||||| || ||||| || ||| | Sbjct 232739 AAGGAGTAGGTCTCTGAGTGGATATTTTCCATCATGATTTGGAAACCGTAAAAGCATTTG 232680 Query 36503 GCCTCGGTAATCTGTACTTCTGTACAAAATCGTTCT--GCTAAATTTTCATTCACTATTC 36560 || || | |||||| || || | | | || ||||| | || || || || || || | Sbjct 232679 GCTTCTGGAATCTGAACCTCGGCAGAGAA--GTTCTCCACCAAGTTCTCGTTAACAATAC 232622 Query 36561 CGTCACTGGCTGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTT-TGGTGTT 36619 | || || || ||||| ||||| | | | || || | ||||| | || Sbjct 232621 CATCGGAAGCAGCGAAAAATGCCAAAATACGGGAAATGAAGAAACGCTCGTTGTCGTTCA 232562 Query 36620 A--GTTTATTCCAATCATTGATATCTTTAGATATATCCACTTCTTCCACTGTCCAAAATG 36677 | | || ||||| |||| | ||||| | ||| | ||| || | |||||||| | Sbjct 232561 AGCGATTGTTCCAGTCATGAGTGTCTTTTCCCAAATCGATTTCCTCTGCAGTCCAAAAAG 232502 Query 36678 ATGCCTCTGCCTTTTTATACATATTCCAGATGTCATGATATTGAATTGGAAAAATAACAA 36737 |||| ||||| || || ||||| | ||| || || || |||| ||| || |||| ||||| Sbjct 232501 ATGCTTCTGCTTTCTTGTACATTTGCCAAATCTCGTGGTATTTAATAGGGAAAAGAACAA 232442 Query 36738 A 36738 | Sbjct 232441 A 232441 >seq5 Length=1501106 Score = 120 bits (132), Expect = 4e-22 Identities = 355/541 (66%), Gaps = 6/541 (1%) Strand=Plus/Minus Query 65812 ACTTGATGGTTCCTAAATTTTGTTGATTACTCTTTTTGTTACACGCATCCTTATAAAGAA 65871 |||| || || |||| ||||| || || ||| |||||| ||||| ||||| | | Sbjct 762059 ACTTAATTGTCCCTAGATTTTTCTGGTTTGATTTTGAGTTACATGCATCTTTATATAACA 762000 Query 65872 TGAATGGAGTACCAGTTTCAATCTGAGATTCTATAATCGCTTTCCAGACGACTCGAGCCT 65931 || | || || ||||| | || ||||||| ||| ||| ||| | | |||| Sbjct 761999 TGTACGGCCCTCCTGTTTCTGTTTGGGATTCTAAAATGGCTAGCCATAATTTCTGCGCCT 761940 Query 65932 TTATTATAGATTTGTATCTCTTTTCTCTTTCGTATAGT--GTATACAATCGTTCGAACTC 65989 | ||| || |||| || ||| || || | ||||| | | | | || || Sbjct 761939 TAATTGTAACTTTGGCTCGACCTTCAGACTCATAGGATTCGTATA-ACTTGA-CAAAGTC 761882 Query 65990 GTCTCCCCAAACATTGTCCAATCCAGGACATTCATCCGGACACATCAACGACCACTCTCC 66049 ||||| || || |||||| |||||| |||||| || | | ||| ||||| ||| Sbjct 761881 ATCTCCGTAACAATCGTCCAACCCAGGAGCTTCATCTGGTGAAAACAATGACCATTCTAG 761822 Query 66050 GTCATCCTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAAATCTCT 66109 | | ||| |||| ||||| || | ||| | ||||| || | |||||||||||| Sbjct 761821 ATTTTGCTTAACTCTCTTCATGAATAAATCGGATATCCATAGTCCATAAAATAAATCTCT 761762 Query 66110 GGTTCTATGTTCCTCGTTTCCTGT-ATTCTTTTTAAGATCGAGGAACGCCATAATATCAT 66168 ||||| || || |||| | || ||| || || | || ||| | | | |||||| Sbjct 761761 GGTTC-GCATTTCTTGTTTGCCGTGATTTTTCTTTAAATTGAGTACATCGAATATATCAC 761703 Query 66169 AATGCCACGGTTCCAAGTATATGGCCATAACTCCAGGCCGTTTGTTTCCTCCCTGATCTA 66228 ||||||| || || | ||||| || | | | || || | | ||||| ||||| | Sbjct 761702 AATGCCATGGCTCAATGTATACTGCAAAAGCACCTGGTCTCCGACTACCTCCTTGATCAA 761643 Query 66229 TGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCATTGGATGTACCAT 66288 ||||| || || | ||| | |||| |||||| ||||| || ||| | ||||| |||| Sbjct 761642 CATATCTTGCAGTTTCATTGAATACTCGCAACATGGGAATTATTCCAGTTGATGTTCCAT 761583 Query 66289 TGGTCCCGGAGATATAGCTTCCACTTGCACGAATATTACTAATTGATAGACCTATTCCCC 66348 | | | | ||| ||| |||| | | |||| |||| ||| || |||||||| | Sbjct 761582 TTGAGCTAGCGATGTAGGATCCATTACCCCGAACATTATGAATATGTAAGCCTATTCCAC 761523 Query 66349 C 66349 | Sbjct 761522 C 761522 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 658172635456800