Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Wickerhamia_20fluorescens_20[genbank_20GCA_5F001599155.1_202016-03-
01] 20 sequences; 13,178,500 total letters
Query= NC_003529.1
Length=155060
Score E
Sequences producing significant alignments: (Bits) Value
seq1 122 9e-23
seq7 98.7 1e-15
>seq1
Length=2974285
Score = 122 bits (134), Expect = 9e-23
Identities = 351/530 (66%), Gaps = 19/530 (4%)
Strand=Plus/Plus
Query 52521 AGACTTGATACTCAACGCTTTTGACAATGTTCCGTGTGTGCGCAAAAAGGATGATTGGGC 52580
|||||| || |||| ||| |||| | | |||| || | || |||| ||| |||||
Sbjct 232776 AGACTTTTTATTCAATGCTATTGAGACTATTCCTTGCATCAAAAAGAAGGCTGACTGGGC 232835
Query 52581 ATTGAAATGGATCGAAAACGACAAAGCCACTTTTGCCGAACGTCTGGTCGCGTTTGCTAT 52640
|| |||||| | ||| | ||| |||| ||||||||| || || ||||||
Sbjct 232836 TTTACGCTGGATCAGTGATGACGAGGCCTTATTTGGCGAACGTCTTGTTGCATTTGCTGC 232895
Query 52641 AGTGGAAGGTGTGtttttttC---GGGTAGTTTTGCGGCAATATTTTACATCAAAACCTT 52697
|| |||||| | ||| ||| || | |||| || | || |||| | || |
Sbjct 232896 TGTTGAAGGTAT--TTTCTTCAGTGGATCGTTT-GCATCCATCTTTTGGTTGAAGAAGAG 232952
Query 52698 GGGCATAATGCCCGGCCTCACGTTTAGCAACGAGTTGATATCGCGCGACGAAGGAATGCA 52757
||| | ||||| || | || || ||||||||| || | || || || || ||||
Sbjct 232953 AGGCTTGATGCCTGGTTTGACTTTCTCCAACGAGTTAATCTGCCGTGATGAGGGTTTGCA 233012
Query 52758 CACAGATTTTGCGTGTTTGTATTATAATACGCGCGTTAAAGAAAAATTGTCATATGAAAA 52817
||| |||||||| || |||| ||| | | | | | || | | | | |||
Sbjct 233013 CACCGATTTTGCTTGCTTGT--TATTCTCC-CACTTGCAAAACAGAC---CCGATGCTGC 233066
Query 52818 AATTCTAGACATGTTTAA---AGAGGCCGTCGACATTGAAAAAGAGTTTTTTACGGACGC 52874
||| | || | | ||| ||||||||| | |||||||| |||||||| || || ||
Sbjct 233067 TATTGTCGAGAAGATTATCACAGAGGCCGTTGCTATTGAAAAGGAGTTTTTCACTGATGC 233126
Query 52875 TTTACCCGTATCATTGTTGGGCATGAACGCGACCATGATGTGCGAGTACATCGAGTTTGT 52934
||| || | || |||||||| |||||| | |||||||| ||||| | ||||||||
Sbjct 233127 TTTGCCTATTTCGTTGTTGGGTATGAACTGTAAATTGATGTGCCAGTACGTGGAGTTTGT 233186
Query 52935 TGCGGACAGACT-GTTGATGCAGCTCGGTCAGCCGAAA-TACTATAATGCGCGTAACCCC 52992
||| |||||| | ||| ||| | | || | ||| || |||| ||| |||
Sbjct 233187 TGCCGACAGATTACTTGTCGCA--TTAGGCAACGAAAAGGTTTACAATGTTACTAATCCC 233244
Query 52993 TTTTCGTTTATGAACAACATATCGCTCGAGGGCAAAACAAACTTTTTCGA 53042
||| |||||| | ||||| ||| | | || || || |||||||||||
Sbjct 233245 TTTGACTTTATGGAAAACATTTCGTTGGCAGGAAAGACCAACTTTTTCGA 233294
>seq7
Length=860703
Score = 98.7 bits (108), Expect = 1e-15
Identities = 160/228 (70%), Gaps = 2/228 (1%)
Strand=Plus/Minus
Query 139538 CCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTC 139597
|| |||| || | ||| || ||||||| |||||||| ||||| ||||| || ||
Sbjct 37859 CCACCTCTCAATCTCAACACCAAGTGAAGAGTAGACTCCTTTTGGATGTTGTAGTCAGAA 37800
Query 139598 ATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 139657
| || | ||| || | || ||||||||| | |||| | |||||| || || ||
Sbjct 37799 AGAGTACGGCCGTCCTCCAATTGCTTACCAGCAAAAATCAATCTTTGCTGGTCAGGGGGA 37740
Query 139658 ATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGCTGTTCCACTG-TGTCGGTGGGCTCCAC 139716
|| ||||| ||||| ||| | || | || | | || || |||||| | ||||||
Sbjct 37739 ATACCTTCCTTGTCC-TGAATCTTGGACTTGACATTGTCAATGGTGTCGGAAGACTCCAC 37681
Query 139717 CTCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764
||||| ||| | ||||| ||||| || || || ||||| ||||||||
Sbjct 37680 CTCAAGGGTGATAGTCTTACCGGTTAAGGTCTTGACGAAAATTTGCAT 37633
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 496063875984000
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |