Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Wickerhamia_20fluorescens_20[genbank_20GCA_5F001599155.1_202016-03- 01] 20 sequences; 13,178,500 total letters Query= NC_003529.1 Length=155060 Score E Sequences producing significant alignments: (Bits) Value seq1 122 9e-23 seq7 98.7 1e-15 >seq1 Length=2974285 Score = 122 bits (134), Expect = 9e-23 Identities = 351/530 (66%), Gaps = 19/530 (4%) Strand=Plus/Plus Query 52521 AGACTTGATACTCAACGCTTTTGACAATGTTCCGTGTGTGCGCAAAAAGGATGATTGGGC 52580 |||||| || |||| ||| |||| | | |||| || | || |||| ||| ||||| Sbjct 232776 AGACTTTTTATTCAATGCTATTGAGACTATTCCTTGCATCAAAAAGAAGGCTGACTGGGC 232835 Query 52581 ATTGAAATGGATCGAAAACGACAAAGCCACTTTTGCCGAACGTCTGGTCGCGTTTGCTAT 52640 || |||||| | ||| | ||| |||| ||||||||| || || |||||| Sbjct 232836 TTTACGCTGGATCAGTGATGACGAGGCCTTATTTGGCGAACGTCTTGTTGCATTTGCTGC 232895 Query 52641 AGTGGAAGGTGTGtttttttC---GGGTAGTTTTGCGGCAATATTTTACATCAAAACCTT 52697 || |||||| | ||| ||| || | |||| || | || |||| | || | Sbjct 232896 TGTTGAAGGTAT--TTTCTTCAGTGGATCGTTT-GCATCCATCTTTTGGTTGAAGAAGAG 232952 Query 52698 GGGCATAATGCCCGGCCTCACGTTTAGCAACGAGTTGATATCGCGCGACGAAGGAATGCA 52757 ||| | ||||| || | || || ||||||||| || | || || || || |||| Sbjct 232953 AGGCTTGATGCCTGGTTTGACTTTCTCCAACGAGTTAATCTGCCGTGATGAGGGTTTGCA 233012 Query 52758 CACAGATTTTGCGTGTTTGTATTATAATACGCGCGTTAAAGAAAAATTGTCATATGAAAA 52817 ||| |||||||| || |||| ||| | | | | | || | | | | ||| Sbjct 233013 CACCGATTTTGCTTGCTTGT--TATTCTCC-CACTTGCAAAACAGAC---CCGATGCTGC 233066 Query 52818 AATTCTAGACATGTTTAA---AGAGGCCGTCGACATTGAAAAAGAGTTTTTTACGGACGC 52874 ||| | || | | ||| ||||||||| | |||||||| |||||||| || || || Sbjct 233067 TATTGTCGAGAAGATTATCACAGAGGCCGTTGCTATTGAAAAGGAGTTTTTCACTGATGC 233126 Query 52875 TTTACCCGTATCATTGTTGGGCATGAACGCGACCATGATGTGCGAGTACATCGAGTTTGT 52934 ||| || | || |||||||| |||||| | |||||||| ||||| | |||||||| Sbjct 233127 TTTGCCTATTTCGTTGTTGGGTATGAACTGTAAATTGATGTGCCAGTACGTGGAGTTTGT 233186 Query 52935 TGCGGACAGACT-GTTGATGCAGCTCGGTCAGCCGAAA-TACTATAATGCGCGTAACCCC 52992 ||| |||||| | ||| ||| | | || | ||| || |||| ||| ||| Sbjct 233187 TGCCGACAGATTACTTGTCGCA--TTAGGCAACGAAAAGGTTTACAATGTTACTAATCCC 233244 Query 52993 TTTTCGTTTATGAACAACATATCGCTCGAGGGCAAAACAAACTTTTTCGA 53042 ||| |||||| | ||||| ||| | | || || || ||||||||||| Sbjct 233245 TTTGACTTTATGGAAAACATTTCGTTGGCAGGAAAGACCAACTTTTTCGA 233294 >seq7 Length=860703 Score = 98.7 bits (108), Expect = 1e-15 Identities = 160/228 (70%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 139538 CCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTC 139597 || |||| || | ||| || ||||||| |||||||| ||||| ||||| || || Sbjct 37859 CCACCTCTCAATCTCAACACCAAGTGAAGAGTAGACTCCTTTTGGATGTTGTAGTCAGAA 37800 Query 139598 ATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 139657 | || | ||| || | || ||||||||| | |||| | |||||| || || || Sbjct 37799 AGAGTACGGCCGTCCTCCAATTGCTTACCAGCAAAAATCAATCTTTGCTGGTCAGGGGGA 37740 Query 139658 ATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGCTGTTCCACTG-TGTCGGTGGGCTCCAC 139716 || ||||| ||||| ||| | || | || | | || || |||||| | |||||| Sbjct 37739 ATACCTTCCTTGTCC-TGAATCTTGGACTTGACATTGTCAATGGTGTCGGAAGACTCCAC 37681 Query 139717 CTCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764 ||||| ||| | ||||| ||||| || || || ||||| |||||||| Sbjct 37680 CTCAAGGGTGATAGTCTTACCGGTTAAGGTCTTGACGAAAATTTGCAT 37633 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 496063875984000