Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Wickerhamia_20fluorescens_20[genbank_20GCA_5F001599155.1_202016-03- 01] 20 sequences; 13,178,500 total letters Query= NC_003663.2 Length=224499 Score E Sequences producing significant alignments: (Bits) Value seq1 354 1e-92 seq5 125 1e-23 >seq1 Length=2974285 Score = 354 bits (392), Expect = 1e-92 Identities = 1469/2291 (64%), Gaps = 55/2291 (2%) Strand=Plus/Minus Query 78711 GTCCAATGTGAATTGAATGGGAGCGGATGCGGGTTTCGTACGTAGATAGTACATTCCCGT 78770 ||| | ||||||||| |||| ||| || || | | || | | |||||||| || || Sbjct 200897 GTCTACTGTGAATTGGATGGCAGCCGAGGCAGCCTGGGTTCTCAAGTAGTACATACCTGT 200838 Query 78771 TTTTAGACCGAGACTCCATCCGTAGAAATGCATACTCGTTAGTTTGGAATAACTCGGATC 78830 ||| || || |||| ||||| |||||||| |||| ||| | ||||| Sbjct 200837 TTTGAGTCCCTTCTTCCAACCGTAAAAATGCATCGAGGTTAATTTACCCATTGTAGGATC 200778 Query 78831 TGCTATATGGATATTCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCCAT 78890 || ||||| |||| ||| || |||||| |||||||| | | |||||||||||| Sbjct 200777 CTTGATGTGGATGTTCAAAGACTGGGATTGATCAATGAAGGCGGCACGGTCTGCAGCCAT 200718 Query 78891 TTTTATGATCGTCTTT-TGTGGAATTTCCCAAATAGTTTTATA-AACTCGCTTAATATCT 78948 | || || || ||| || | |||||||| | || || || ||| | ||| | || Sbjct 200717 ATCAATAAT-GTGTTTCTGAGAGATTTCCCATACGGTCTTGTACAACGC-CTTGACTTCG 200660 Query 78949 TCTGGAAGGTTTGTATTC---TGAATGGATCCACCATCTGCCATAATCCTATTCTTGATC 79005 || || | ||| | | || || || || | | || || | ||||| || Sbjct 200659 TCAGGGATGTTGGGCAACAGCTGGATCGAACCGTTGTTGGAAATGATGTTGTTCTTCATG 200600 Query 79006 TCTTCATTCCATAATTTTCTC---TCGGTTAAAACTCTAAGGAGATGCGGATTAACTACT 79062 || ||||| | | | | || | | | | | | || || || || | | Sbjct 200599 GAGTCGTTCCAGA---TACCCAAATCCACAAGATCGCGTAACAAATAAGGGTTGACAATT 200543 Query 79063 TGAAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATATGGTTCCACCGAT 79122 || ||||| |||| ||||||||| | | ||| ||||| || || ||||| | | Sbjct 200542 TGGAATTCACCAGCCAATACTCTTCTGGAGTAGATATTGGAAGTGTAGGGTTCAAAGCAC 200483 Query 79123 TCATTATTTCCCAAAATTTGAGCAGTTGATGCCGTTGGCATAGGTGCCACCAATAAACTA 79182 || || || ||||| ||||| | ||| |||||||| ||||| || || |||||||| | Sbjct 200482 TCGTTGTTACCCAATATTTGGGAAGTGGATGCCGTGGGCATGGGAGCAACCAATAACGAA 200423 Query 79183 TTTCTAAGACCGTA-TGATCTGATTTTATCTTTTAGAGATTCCCAATCCCAAAGATCAGA 79241 ||||||| ||| | | | | ||||| |||| | | ||||| ||||| | ||| Sbjct 200422 TTTCTAATACCATGCTTAGCCAATTTTTGCTTTAAT-GTGTCCCAGTCCCACAACTCACT 200364 Query 79242 CGGGACAACATTCCAAAGATCATATTGTAGAATACCGTTACTAGCGTATGATCCTGTGTA 79301 || | |||||||||| | |||| | ||| || || || || ||| Sbjct 200363 GGGCTTTCTGTCCCAAAGATCAAACTGTAACAAACCCTTGGAGGCTGGAGACCCCTCGTA 200304 Query 79302 TGTTTCATAAGGTCCTTCCTTTTCGGCTAATTCACAACTCGCCTCTAATGCTCCGTAATA 79361 |||| |||| || || | || ||||| ||| || || | ||| |||| || Sbjct 200303 ACTTTCGTAAGAACCCTCGACCTGCGCCAATTCGATACTGGCTTCCACTGCACCGTGGTA 200244 Query 79362 AATGGTTTCGAAAATCTTCTTATTGAGATCTTGTGCTTCTAGGCTATCAAATGGATAATT 79421 |||||||||||||||| |||| | ||| |||| | | ||||| || | | Sbjct 200243 CATGGTTTCGAAAATCTGAATATTCAATTCTCTAGCTTGTTGCGAGTCAAAGGGCAATCT 200184 Query 79422 TAAGAGAATAAACGCGTCTGCTAATCCTTGAACACCAATACCGATAGGTCTATGTCTCTT 79481 || ||||| || ||||| || || || ||||| | | || ||||||| ||| | Sbjct 200183 CAATGCCATAAAAGCATCTGCCAAACCCTGCACACCCAATGCAATTGGTCTATTCCTCAT 200124 Query 79482 ATTAGAAATTTCAGCTTCTGGAATAGGATAATAATTAATATCTATAATTTTATTGAGATT 79541 ||||| ||| |||||||||| || ||| | ||| ||| || ||| | || | || Sbjct 200123 GTTAGATCTTTTGGCTTCTGGAACGGGGTAAAAGTTACGATCAATGATTCTGTTCAAGTT 200064 Query 79542 CCTGACTATTACTTTGACCACATCCTTTAGTTTGAGAAAAT-------CAAATCGT--CC 79592 | | | || ||| || || | || || ||| | ||| | || | Sbjct 200063 ACGGGTAACAACCTTGGTAACTTCATGAAGCTTCTCAAAGTTGTACCACAAGTTGTTGCT 200004 Query 79593 ATCTATT---ACAAACATGTTCAACGCGACAGATGCCAGATTACAAACGGCTACCTCATT 79649 ||| || |||||| | | |||| |||||||| ||||| || || ||||||| Sbjct 200003 GTCTTTTTCAACAAACGAGGGAAGTGCGATAGATGCCAAGTTACATACAGCAACCTCATC 199944 Query 79650 AGCATCCGCATATTGTATTATTTCAGTGCAGAGGTTACTACACTTAATGGTTCCTAAATT 79709 | | |||| | |||||| || | || | | || ||| || || || Sbjct 199943 TGGCGAGGAGTATTCGACAATTTCACAACACAAATTGGAAGATTTGATGACACCCAAGTT 199884 Query 79710 TTGTTGATTACTCTTTTTGTTACACGCATCCTTATAAAGAATGAACGGAGTACCAGTTTC 79769 | ||||||| | ||||| || || ||||| || || | ||||| || ||||| ||||| Sbjct 199883 CTTTTGATTAGTTTTTTTATTGCATGCATCTTTGTACAACATGAATGGGGTACCGGTTTC 199824 Query 79770 AATCTGAGATTCTATAATCGCTTTCCAGACGACTCGAGCCTTTATTATAGACTTGTATCT 79829 | || | || | ||| || | ||| | ||||||| || || ||| || Sbjct 199823 GGTTTGCGCCTCCAAAATGGCGTACCATAATTTCTGAGCCTTGAT---AGTCTTTCTTCC 199767 Query 79830 C---TTTTCTCTTTCGTATTGTGTATATAATCGTTCGAACTCGTCTCCCCAAACATCGTC 79886 ||||| | |||||| | || ||| || ||||| || || |||||||| Sbjct 199766 ACGGTTTTCACGTTCGTACTTCTCGTACAATGCCTCAAACTCATCACCGTAAACATCGGA 199707 Query 79887 TAATCCAGGACATTCGTCAGGACACATCAACGACCACTCTCCATCATCCTTTACTCGTTT 79946 || || | || | |||| | | ||| | |||||| ||| | || |||| || Sbjct 199706 CAAACCTTGGGCCTCATTAGGAGAGAACAAGGTCCACTCAGCATTCTGCTCAACTCTCTT 199647 Query 79947 CATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATGCTCCTCGTT 80006 |||||| | ||||||||||| | ||| || | |||||| | || || || || Sbjct 199646 CATAAACAAGTCAGGAATCCACAATGCTGGGAACAAATCTCTTGCCCTCATTTCTTCCTT 199587 Query 80007 TCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTA 80066 || ||||||| ||| ||||| ||| | | ||||| | ||||| |||||||| || Sbjct 199586 ACCATGATTCTTTCTAATATCGATGAAATCAAAGATATCCGCGTGCCATGGTTCCAAATA 199527 Query 80067 TATGGCCATAACTCCCGGTCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATT 80126 || ||| | | || |||| || || || |||||||| | ||| | ||| |||||||| Sbjct 199526 TAAGGCAAATGCACCGGGTCTCTTATTACCACCCTGATCCACGTAACGAGCAGTGTTATT 199467 Query 80127 ATAAACTCTCAACATTGGAATAATACCATTGGATGTACCATTGGTCCCGGAGATATAGCT 80186 ||||||| | ||| ||||| |||||||| || ||||| ||||| || | || ||| Sbjct 199466 GAAAACTCTAACCATAGGAATGATACCATTAGAGGTACCGTTGGTACCAGCAATGTAGGC 199407 Query 80187 TCCACTGGCACGAATATTACTAATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAA 80246 ||| | | ||||| || || || ||| || || || || | || || || || Sbjct 199406 ACCAGTCGAGCGAATGTTGTGTATGTGTAAACCAATACCTCCAGCACTCTTGGAAATCAA 199347 Query 80247 TGCGCATCGTTTTAACGTATCATAGATGCCCTCTATGCTATCATCAATCATGTTAAGTAG 80306 || ||| || || |||||||| || || || || |||||| |||| || | Sbjct 199346 GGCACATGTCTTCAAGGTATCATAAATACCGTCAATAGAATCATCTTTCATAGCAATCAA 199287 Query 80307 AAAACAGCTAGACATTTG-GTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGT 80365 ||| || |||||||| | | | | || || |||||||| || ||||| || ||| Sbjct 199286 AAAGCACGAGGACATTTGAGGGTTGGGT-GTACCAGCATTAAACAAAGTAGGCGAGCCGT 199228 Query 80366 GCGTAAACCATTTTTCAGACAGTAGATTGTACGTCTCAATAGCTGATTCT----ATATCC 80421 | ||||| | | | |||| | |||||| || |||| ||| ||| || || Sbjct 199227 GGGTAAAGTGTCTCTGGGACATCATATTGTAAGTTTCAA----TGACTCTGGGAATGTCG 199172 Query 80422 CATTGATGAATTCCTACCGCGACACGCATTAACATGTGCTGAGGTCTTTCAACGATCTTG 80481 |||||| || | || || | ||| | | ||||||||||||||| ||| ||| Sbjct 199171 TCACCATGAATACCAATGGCAACTCTCATAATTAAGTGCTGAGGTCTTTCTGCGACTTTG 199112 Query 80482 TTATTTATTTTCAACAAGTAAGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAA 80541 ||| ||| | || | ||||||| | || |||||||| |||||||| || ||||| | Sbjct 199111 CCATTAATTCTTAAAAGGTAAGATCTCTCTAAAGTTTTGAAACCAAAGTAATTGTAGTTA 199052 Query 80542 AAGTCTCGTTCGTAAATAATAACCGAGTTGAGTTTATCCTTATATTTGTTAACTACATC- 80600 || || || || | | ||| | |||| | | ||| || ||| ||| | || Sbjct 199051 AAATCACGATCAAATACAATTGCAGAGTCCAAGTCATCAGCGTACTTGGTAATAATGTCG 198992 Query 80601 CATGGTGATACT-TGAAATAATCGGAGAATGTTTCCCATTTTTAGGATTAACATAGTTGA 80659 ||| | | || || || || || || || ||| |||| || |||||||||| Sbjct 198991 TATGTT--TCCTGGGAGATCATAGGGGAGTGCAAACCAGTTTTGGGGTTAACATAGTCAT 198934 Query 80660 ATAAATCCT--CCATCACTTCACTAAATAGtttttttGTTTCCTTGTGTAGATTTGATAC 80717 | || |||| | | ||||| | ||| | ||| | |||| ||||| | || || || Sbjct 198933 ACAACTCCTTACTAACACTTGA--AAACTGCTTTGTAGTTTGTTTGTGCAAGTTAGAAAC 198876 Query 80718 GGCTATTCTGGCGGCTAAAATGGCATAATCTGGATGTTGTGTAGTACAAGT-GGCTGCTA 80776 || ||||| || || || || ||||||||||| || ||||| || || || || Sbjct 198875 AGCAATTCTTGCTGCCAAGATAGCATAATCTGGGTGGATAGTAGT-CATGTATGCGGCAG 198817 Query 80777 TTTCGGCTGCCAGAGTGTCCAATTCTACCGTTGTTACTCCATTATATATTCCTTGGATAA 80836 | || ||||| | | || | || | || || || || | || | ||| |||| Sbjct 198816 TCTCTGCTGCTAAGTTATCAAGCTCAATAGTGGTAACACCTTGGTACACACCTGAAATAA 198757 Query 80837 CCTTCATAGCTATTTTAATAGGATCTATATGATCAGTGTTTAAGCCATAACATAAT-TTT 80895 | | || |||| | | ||| | |||| | || |||||||||||||||| | | Sbjct 198756 CTCTTTGAGTGATTTGCACGGCATCAACGTGATTGGAGTCTAAGCCATAACATAATCTCT 198697 Query 80896 CTAATACGAGACGTGATTTTATCAAACATGACATTTTCCTTGTATCCATTTCGTTTAATG 80955 || | | || || ||||||||||| |||| || ||| |||| || ||||| Sbjct 198696 GTACT-CTAGCAGTAATTTTATCAAAACGGACAGGCTCTTTGCGACCATGTCTTTTAACC 198638 Query 80956 ACAAACATTTT 80966 ||| ||||||| Sbjct 198637 ACATACATTTT 198627 Score = 219 bits (242), Expect = 6e-52 Identities = 595/902 (66%), Gaps = 13/902 (1%) Strand=Plus/Minus Query 49648 TCTTGAGACATAACTCCCATTTTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTT 49707 |||| || |||||| || |||||||| |||| || | ||||||||||| || || Sbjct 233338 TCTT-AGCCATAACACCAGCCTTTTGGTAGTCACTAACTCTCTTTTCGAAAAAGTTGGTC 233280 Query 49708 TTTCCTTCCAATGATATATTTTCCATGAAATCAAACGGATTGGTAACATTATAAAttttt 49767 |||||| |||| || || |||||||| || ||||| ||||| |||||||| |||| ||| Sbjct 233279 TTTCCTGCCAACGAAATGTTTTCCATAAAGTCAAAGGGATTAGTAACATTGTAAACCTTT 233220 Query 49768 ttAAATCCCAATTCAGAAATCAATCTATCCGCGACAAATTCTATATATGTTTTCATCATT 49827 | || ||| | || ||||| || || ||||| || | || ||||| | Sbjct 233219 TCGTTGCCTAATGCGACAAGTAATCTGTCGGCAACAAACTCCACGTACTGGCACATCAAT 233160 Query 49828 TCACAATTCATTCCTATAAGTTTAACTGGAAGAGCCGCAGTAAGAAATTCTTGTTCAATG 49887 | ||| ||||| || | | || || | ||| |||| | ||| || | |||||| Sbjct 233159 TTACAGTTCATACCCAACAACGAAATAGGCAAAGCATCAGTGAAAAACTCCTTTTCAATA 233100 Query 49888 GATACCGCATCTGTTATAATAGATCTA-ACGGTTTCTTCACTCGGTGGATGCAAT--AAA 49944 | || || ||||| ||||| ||| || | | || |||| | || | || Sbjct 233099 GCAACGGCCTCTGTGATAATCT-TCTCGACAATAGCAGCA-TCGG-GTCTGTTTTGCAAG 233043 Query 49945 TGTTTAAACATCAAACATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCG 50004 || || | ||| || || |||||| ||||| |||||| || | | |||| ||| Sbjct 233042 TGGGAGAATAACAAGCAAGCAAAATCGGTGTGCAAACCCTCATCACGGCAGATTAACTCG 232983 Query 50005 TTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAAT 50064 ||||| || || | || ||||| | ||| | ||| || | |||||| ||||| ||||| Sbjct 232982 TTGGAGAAAGTCAAACCAGGCATCAAGCCTCTCTTCTTCAACCAAAAGATGGATGCAAAC 232923 Query 50065 GACCCAGAAAAGAAGATTCCTTCTACTGCGGCAAAGGCAACAAGTCTCTCTCCATAACTG 50124 || ||| ||||| || ||||| || || ||||| |||||||| | || ||| | | Sbjct 232922 GATCCACTGAAGAAAATACCTTCAACAGCAGCAAATGCAACAAGACGTTCGCCAAATAAG 232863 Query 50125 GCGCTGTCATGT---ATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATC 50181 || ||||| ||||| | |||||| || ||||||||||| | ||||| || Sbjct 232862 GCCTCGTCATCACTGATCCAGCGTAAAGCCCAGTCAGCCTTCTTTTTGATGCAAGGAATA 232803 Query 50182 GTTTCTATGGCATTAAAGAGATAGtttttttCATTACTATCTTTAACATAAGTATCGATC 50241 || || || ||||| || | | ||| | || || || || | ||| || |||||| Sbjct 232802 GTCTCAATAGCATTGAATAAAAAGTCTGCCTCCTTGGGGTCCTTGATATAGGTGTCGATC 232743 Query 50242 AAAAGACTATACATTTCCGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACAT 50301 || | || | || || || || ||||| || || || || ||||| || ||| Sbjct 232742 AACAAGGAGTAGGTCTCTGAGTGGATATTTTCCATCATGATTTGGAAACCGTAAAAGCAT 232683 Query 50302 CTAGCCTCGGTAATCTGCACTTCTGTACAAAATCGTTCAGCTAAATTTTCATTCACTATT 50361 | || || | |||||| || || | | | || || | || || || || || || Sbjct 232682 TTGGCTTCTGGAATCTGAACCTCGGCAGAGAAGTTCTCCACCAAGTTCTCGTTAACAATA 232623 Query 50362 CCGTCACTGGCTGCAAAAAACGCCAATACATGTTTTATAAAATGTTTTTCGTTGGGTGTT 50421 || || || || ||||| ||||| | | | || || |||||| | Sbjct 232622 CCATCGGAAGCAGCGAAAAATGCCAAAATACGGGAAATGAAGAAACGCTCGTTGTCGTTC 232563 Query 50422 A---GTTTATTCCAATCATTGATATCTTTAGATATATCTACTTCTTCCACTGTCCAAAAT 50478 | | || ||||| |||| | ||||| | ||| | ||| || | |||||||| Sbjct 232562 AAGCGATTGTTCCAGTCATGAGTGTCTTTTCCCAAATCGATTTCCTCTGCAGTCCAAAAA 232503 Query 50479 GATGCCTCTGCCTTTTTATACATATTCCAGATGTCATGATATTGGATTGGGAAAATAACA 50538 ||||| ||||| || || ||||| | ||| || || || |||| || ||||||| |||| Sbjct 232502 GATGCTTCTGCTTTCTTGTACATTTGCCAAATCTCGTGGTATTTAATAGGGAAAAGAACA 232443 Query 50539 AA 50540 || Sbjct 232442 AA 232441 >seq5 Length=1501106 Score = 125 bits (138), Expect = 1e-23 Identities = 354/540 (66%), Gaps = 4/540 (1%) Strand=Plus/Minus Query 79691 ACTTAATGGTTCCTAAATTTTGTTGATTACTCTTTTTGTTACACGCATCCTTATAAAGAA 79750 ||||||| || |||| ||||| || || ||| |||||| ||||| ||||| | | Sbjct 762059 ACTTAATTGTCCCTAGATTTTTCTGGTTTGATTTTGAGTTACATGCATCTTTATATAACA 762000 Query 79751 TGAACGGAGTACCAGTTTCAATCTGAGATTCTATAATCGCTTTCCAGACGACTCGAGCCT 79810 || |||| || ||||| | || ||||||| ||| ||| ||| | | |||| Sbjct 761999 TGTACGGCCCTCCTGTTTCTGTTTGGGATTCTAAAATGGCTAGCCATAATTTCTGCGCCT 761940 Query 79811 TTATTATAGACTTGTATCTCTTTTCTCTTTCGTATTGTGTATATAATCGTTCGAACTCGT 79870 | ||| || ||| || ||| || || | ||||| | || || | Sbjct 761939 TAATTGTAACTTTGGCTCGACCTTCAGACTCATAGGATTCGTATAACTTGACAAAGTCAT 761880 Query 79871 CTCCCCAAACATCGTCTAATCCAGGACATTCGTCAGGACACATCAACGACCACTCTCCAT 79930 |||| || |||||| || |||||| ||| || || | | ||| ||||| ||| || Sbjct 761879 CTCCGTAACAATCGTCCAACCCAGGAGCTTCATCTGGTGAAAACAATGACCATTCTAGAT 761820 Query 79931 CATCCTTTACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGG 79990 | ||| |||| ||||| || | ||| | ||||| || | ||||| |||||||| Sbjct 761819 TTTGCTTAACTCTCTTCATGAATAAATCGGATATCCATAGTCCATAAAATAAATCTCTGG 761760 Query 79991 TTC-TATGCTCCTCGTTTCCTGT-ATTCTTTTTAAGATCGAGGAACGCCATAATATCAGA 80048 ||| || | || |||| | || ||| || || | || ||| | | | |||||| | Sbjct 761759 TTCGCAT--TTCTTGTTTGCCGTGATTTTTCTTTAAATTGAGTACATCGAATATATCACA 761702 Query 80049 ATGCCACGGTTCCAAGTATATGGCCATAACTCCCGGTCGTTTGTTTCCTCCCTGATCTAT 80108 |||||| || || | ||||| || | | | || |||| | ||||| ||||| | Sbjct 761701 ATGCCATGGCTCAATGTATACTGCAAAAGCACCTGGTCTCCGACTACCTCCTTGATCAAC 761642 Query 80109 GTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCATTGGATGTACCATT 80168 ||||| || || | ||| | |||| |||||| ||||| || ||| | ||||| ||||| Sbjct 761641 ATATCTTGCAGTTTCATTGAATACTCGCAACATGGGAATTATTCCAGTTGATGTTCCATT 761582 Query 80169 GGTCCCGGAGATATAGCTTCCACTGGCACGAATATTACTAATTGATAGACCTATTCCCCC 80228 | | | ||| ||| |||| | | |||| |||| ||| || |||||||| || Sbjct 761581 TGAGCTAGCGATGTAGGATCCATTACCCCGAACATTATGAATATGTAAGCCTATTCCACC 761522 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 718268620432800