Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Wickerhamia_20fluorescens_20[genbank_20GCA_5F001599155.1_202016-03- 01] 20 sequences; 13,178,500 total letters Query= NC_004002.1 Length=149955 Score E Sequences producing significant alignments: (Bits) Value seq1 199 4e-46 >seq1 Length=2974285 Score = 199 bits (220), Expect = 4e-46 Identities = 594/905 (66%), Gaps = 21/905 (2%) Strand=Plus/Minus Query 13563 TTAGAAATAACGCCCATTTTTTGATATTCACTAACTCTTTTTTCAAAGAAGTTAGTTTTA 13622 |||| ||||| || ||||| || ||||||||||| ||||| || ||||| || || Sbjct 233336 TTAGCCATAACACCAGCCTTTTGGTAGTCACTAACTCTCTTTTCGAAAAAGTTGGTCTTT 233277 Query 13623 CCTTCCAGTGATATATTTTCCATAAAATCAAATGGATTTATTGACAT---AAACACTTTA 13679 ||| ||| || || ||||||||||| ||||| ||||| | | |||| |||| |||| Sbjct 233276 CCTGCCAACGAAATGTTTTCCATAAAGTCAAAGGGATT-AGTAACATTGTAAAC-CTTT- 233220 Query 13680 TCACAACCTAGTTCTAATAGTAATCTATCAGCAATAAACTCAATATATTGAGACATTAAA 13739 || |||| | | | |||||||| || |||| |||||| | || || |||| || Sbjct 233219 TCGTTGCCTAATGCGACAAGTAATCTGTCGGCAACAAACTCCACGTACTGGCACATCAAT 233160 Query 13740 TCACAATTCATACCTATTAGTTTTACAGGAATTATATTGGTTAAAAATTCTTTTTCTATA 13799 | ||| |||||||| | | | ||| | || || ||||| || ||||| ||| Sbjct 233159 TTACAGTTCATACCCAACAACGAAATAGGCAAAGCATCAGTGAAAAACTCCTTTTCAATA 233100 Query 13800 GACACAGCCTCTTTTATAATAATTGTAATAATCTCATTAGAAGGAGGATATTTTAGATGT 13859 | || |||||| | ||||| | | ||| || | || | |||| | || Sbjct 233099 GCAACGGCCTCTGTGATAATCTTCTCGACAATAGCAGCATCGGGTC--TGTTTTGCAAGT 233042 Query 13860 TTAAAAATTAAA--CACGCAAAATCACAATGAAGGCCCTCATCTCTACTAATAAGTTCGT 13917 | ||| | | || |||||||| || | |||||||| | | || | |||| Sbjct 233041 GGGAGAATAACAAGCAAGCAAAATCGGTGTGCAAACCCTCATCACGGCAGATTAACTCGT 232982 Query 13918 TTGAAAATGTTAATCCTGGCATCAATCCTCGtttttttAACCAAAATATTGCAGCAAATG 13977 | || || || || || |||||||| |||| || || |||||||| || | ||||| | Sbjct 232981 TGGAGAAAGTCAAACCAGGCATCAAGCCTCTCTTCTTCAACCAAAAGATGGATGCAAACG 232922 Query 13978 ACCCGGAAAAGAATATTCCCTCAACTGCAGCAAACGCTATTAATCGTTCTCCAAACGATG 14037 | || ||||| || || ||||| |||||||| || | | ||||| ||||| | | Sbjct 232921 ATCCACTGAAGAAAATACCTTCAACAGCAGCAAATGCAACAAGACGTTCGCCAAATAAGG 232862 Query 14038 CTTTTTTGTTCGATATCCATTTTCTAGCCCATTCAGAtttttttttAATAAAATCCATTG 14097 | | | | ||||| | |||||| |||| || ||||| || || || | Sbjct 232861 CCTCGTCATCACTGATCCAGCGTAAAGCCCAGTCAGCCTTCTTTTTGATGCAAGGAATAG 232802 Query 14098 TTTCAATAGCATTAAATAAATATTCCTTCTCTTTAG--TACTTGAAATGTATGTATCAAT 14155 | ||||||||||| |||||| | || ||| || | | ||||| || | || || || Sbjct 232801 TCTCAATAGCATTGAATAAAAAGTCTGCCTCCTTGGGGTCCTTGATAT--AGGTGTCGAT 232744 Query 14156 AAGTAAGCTATACATTTCAGAGTGTATGTTTTCCATAGCTATCTGAAAACCATAAAAGCA 14215 | ||| || | || ||||| || |||||||| || || ||||| |||||||| Sbjct 232743 CAACAAGGAGTAGGTCTCTGAGTGGATATTTTCCATCATGATTTGGAAACCGTAAAAGCA 232684 Query 14216 TCTAGCTTCCGACCATTGTACTTCCGAGTAAAATCTTTCGGCCAAATTTTCATTAACTAT 14275 | | ||||| | || || || | | || | || |||| || || ||||| || Sbjct 232683 TTTGGCTTCTGGAATCTGAACCTCGGCAGAGAAGTTCTCCACCAAGTTCTCGTTAACAAT 232624 Query 14276 ACCATCACTAGCTGCAAAAAATGCCAATATGTTTTTAATAAAGTATTGCTCTTCATTGTT 14335 |||||| ||| || ||||||||||| || ||| ||| | |||| | | ||| Sbjct 232623 ACCATCGGAAGCAGCGAAAAATGCCAAAATACGGGAAATGAAGAAACGCTCGTTGTCGTT 232564 Query 14336 ---GAGTTTTTTCCAATCGGATAA--ATCCTTAGAAAGATCTACTTCATCAACTGTCCAA 14390 | | || ||||| || || | || || | ||| | ||| || | |||||| Sbjct 232563 CAAGCGATTGTTCCAGTC--ATGAGTGTCTTTTCCCAAATCGATTTCCTCTGCAGTCCAA 232506 Query 14391 AAACTAGCGACAGCTTTTTTATACATTACCCATATTTCTTTATATAATATAGGAAAAACT 14450 ||| || | ||||| || |||||| ||| || || | ||| ||||| |||| Sbjct 232505 AAAGATGCTTCTGCTTTCTTGTACATTTGCCAAATCTCGTGGTATTTAATAGGGAAAAGA 232446 Query 14451 ACAAA 14455 ||||| Sbjct 232445 ACAAA 232441 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 479727880068000