Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Wickerhamia_20fluorescens_20[genbank_20GCA_5F001599155.1_202016-03-
01] 20 sequences; 13,178,500 total letters
Query= NC_004002.1
Length=149955
Score E
Sequences producing significant alignments: (Bits) Value
seq1 199 4e-46
>seq1
Length=2974285
Score = 199 bits (220), Expect = 4e-46
Identities = 594/905 (66%), Gaps = 21/905 (2%)
Strand=Plus/Minus
Query 13563 TTAGAAATAACGCCCATTTTTTGATATTCACTAACTCTTTTTTCAAAGAAGTTAGTTTTA 13622
|||| ||||| || ||||| || ||||||||||| ||||| || ||||| || ||
Sbjct 233336 TTAGCCATAACACCAGCCTTTTGGTAGTCACTAACTCTCTTTTCGAAAAAGTTGGTCTTT 233277
Query 13623 CCTTCCAGTGATATATTTTCCATAAAATCAAATGGATTTATTGACAT---AAACACTTTA 13679
||| ||| || || ||||||||||| ||||| ||||| | | |||| |||| ||||
Sbjct 233276 CCTGCCAACGAAATGTTTTCCATAAAGTCAAAGGGATT-AGTAACATTGTAAAC-CTTT- 233220
Query 13680 TCACAACCTAGTTCTAATAGTAATCTATCAGCAATAAACTCAATATATTGAGACATTAAA 13739
|| |||| | | | |||||||| || |||| |||||| | || || |||| ||
Sbjct 233219 TCGTTGCCTAATGCGACAAGTAATCTGTCGGCAACAAACTCCACGTACTGGCACATCAAT 233160
Query 13740 TCACAATTCATACCTATTAGTTTTACAGGAATTATATTGGTTAAAAATTCTTTTTCTATA 13799
| ||| |||||||| | | | ||| | || || ||||| || ||||| |||
Sbjct 233159 TTACAGTTCATACCCAACAACGAAATAGGCAAAGCATCAGTGAAAAACTCCTTTTCAATA 233100
Query 13800 GACACAGCCTCTTTTATAATAATTGTAATAATCTCATTAGAAGGAGGATATTTTAGATGT 13859
| || |||||| | ||||| | | ||| || | || | |||| | ||
Sbjct 233099 GCAACGGCCTCTGTGATAATCTTCTCGACAATAGCAGCATCGGGTC--TGTTTTGCAAGT 233042
Query 13860 TTAAAAATTAAA--CACGCAAAATCACAATGAAGGCCCTCATCTCTACTAATAAGTTCGT 13917
| ||| | | || |||||||| || | |||||||| | | || | ||||
Sbjct 233041 GGGAGAATAACAAGCAAGCAAAATCGGTGTGCAAACCCTCATCACGGCAGATTAACTCGT 232982
Query 13918 TTGAAAATGTTAATCCTGGCATCAATCCTCGtttttttAACCAAAATATTGCAGCAAATG 13977
| || || || || || |||||||| |||| || || |||||||| || | ||||| |
Sbjct 232981 TGGAGAAAGTCAAACCAGGCATCAAGCCTCTCTTCTTCAACCAAAAGATGGATGCAAACG 232922
Query 13978 ACCCGGAAAAGAATATTCCCTCAACTGCAGCAAACGCTATTAATCGTTCTCCAAACGATG 14037
| || ||||| || || ||||| |||||||| || | | ||||| ||||| | |
Sbjct 232921 ATCCACTGAAGAAAATACCTTCAACAGCAGCAAATGCAACAAGACGTTCGCCAAATAAGG 232862
Query 14038 CTTTTTTGTTCGATATCCATTTTCTAGCCCATTCAGAtttttttttAATAAAATCCATTG 14097
| | | | ||||| | |||||| |||| || ||||| || || || |
Sbjct 232861 CCTCGTCATCACTGATCCAGCGTAAAGCCCAGTCAGCCTTCTTTTTGATGCAAGGAATAG 232802
Query 14098 TTTCAATAGCATTAAATAAATATTCCTTCTCTTTAG--TACTTGAAATGTATGTATCAAT 14155
| ||||||||||| |||||| | || ||| || | | ||||| || | || || ||
Sbjct 232801 TCTCAATAGCATTGAATAAAAAGTCTGCCTCCTTGGGGTCCTTGATAT--AGGTGTCGAT 232744
Query 14156 AAGTAAGCTATACATTTCAGAGTGTATGTTTTCCATAGCTATCTGAAAACCATAAAAGCA 14215
| ||| || | || ||||| || |||||||| || || ||||| ||||||||
Sbjct 232743 CAACAAGGAGTAGGTCTCTGAGTGGATATTTTCCATCATGATTTGGAAACCGTAAAAGCA 232684
Query 14216 TCTAGCTTCCGACCATTGTACTTCCGAGTAAAATCTTTCGGCCAAATTTTCATTAACTAT 14275
| | ||||| | || || || | | || | || |||| || || ||||| ||
Sbjct 232683 TTTGGCTTCTGGAATCTGAACCTCGGCAGAGAAGTTCTCCACCAAGTTCTCGTTAACAAT 232624
Query 14276 ACCATCACTAGCTGCAAAAAATGCCAATATGTTTTTAATAAAGTATTGCTCTTCATTGTT 14335
|||||| ||| || ||||||||||| || ||| ||| | |||| | | |||
Sbjct 232623 ACCATCGGAAGCAGCGAAAAATGCCAAAATACGGGAAATGAAGAAACGCTCGTTGTCGTT 232564
Query 14336 ---GAGTTTTTTCCAATCGGATAA--ATCCTTAGAAAGATCTACTTCATCAACTGTCCAA 14390
| | || ||||| || || | || || | ||| | ||| || | ||||||
Sbjct 232563 CAAGCGATTGTTCCAGTC--ATGAGTGTCTTTTCCCAAATCGATTTCCTCTGCAGTCCAA 232506
Query 14391 AAACTAGCGACAGCTTTTTTATACATTACCCATATTTCTTTATATAATATAGGAAAAACT 14450
||| || | ||||| || |||||| ||| || || | ||| ||||| ||||
Sbjct 232505 AAAGATGCTTCTGCTTTCTTGTACATTTGCCAAATCTCGTGGTATTTAATAGGGAAAAGA 232446
Query 14451 ACAAA 14455
|||||
Sbjct 232445 ACAAA 232441
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 479727880068000
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |