Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Wickerhamia_20fluorescens_20[genbank_20GCA_5F001599155.1_202016-03- 01] 20 sequences; 13,178,500 total letters Query= NC_004003.1 Length=149599 Score E Sequences producing significant alignments: (Bits) Value seq1 206 3e-48 >seq1 Length=2974285 Score = 206 bits (228), Expect = 3e-48 Identities = 501/750 (67%), Gaps = 14/750 (2%) Strand=Plus/Minus Query 13351 TTAGAAATAACGCCCATTTTTTGATATTCACTAACTCTTTTTTCAAAAAAGTTAGTTTTA 13410 |||| ||||| || ||||| || ||||||||||| ||||| |||||||| || || Sbjct 233336 TTAGCCATAACACCAGCCTTTTGGTAGTCACTAACTCTCTTTTCGAAAAAGTTGGTCTTT 233277 Query 13411 CCTTCCAGTGATATATTTTCCATAAAATCGAATGGATTTGTTGACAT---AAACACTTTA 13467 ||| ||| || || ||||||||||| || || ||||| || |||| |||| |||| Sbjct 233276 CCTGCCAACGAAATGTTTTCCATAAAGTCAAAGGGATTAGTA-ACATTGTAAAC-CTTT- 233220 Query 13468 TCACAACCTAGTTCTAATAATAATCTATCAGCAATAAACTCAATATATTGAGACATTAAA 13527 || |||| | | | | |||||| || |||| |||||| | || || |||| || Sbjct 233219 TCGTTGCCTAATGCGACAAGTAATCTGTCGGCAACAAACTCCACGTACTGGCACATCAAT 233160 Query 13528 TCACAATTCATACCTATTAGTTTTACAGGAATTATATTAGTTAAAAATTCTTTTTCTATA 13587 | ||| |||||||| | | | ||| | || ||| ||||| || ||||| ||| Sbjct 233159 TTACAGTTCATACCCAACAACGAAATAGGCAAAGCATCAGTGAAAAACTCCTTTTCAATA 233100 Query 13588 GACACAGCCTCGTTTATAATAATCTTAATAATGTCATTAGAAGGAGGATATTTTAGATGT 13647 | || ||||| | ||||| ||| | ||| || | || | |||| | || Sbjct 233099 GCAACGGCCTCTGTGATAATCTTCTCGACAATAGCAGCATCGGGTC--TGTTTTGCAAGT 233042 Query 13648 TTAAAAATTAAA--CACGCAAAATCACAATGAAGGCCCTCATCTCTACTAATAAGTTCGT 13705 | ||| | | || |||||||| || | |||||||| | | || | |||| Sbjct 233041 GGGAGAATAACAAGCAAGCAAAATCGGTGTGCAAACCCTCATCACGGCAGATTAACTCGT 232982 Query 13706 TTGAAAATGTTAATCCTGGCATCAATCCTCGtttttttAACCAAAATATTGCAGCGAATG 13765 | || || || || || |||||||| |||| || || |||||||| || | || || | Sbjct 232981 TGGAGAAAGTCAAACCAGGCATCAAGCCTCTCTTCTTCAACCAAAAGATGGATGCAAACG 232922 Query 13766 ATCCGGAAAAGAATATTCCCTCAACTGCAGCAAACGCTATTAGTCGTTCTCCAAACGATG 13825 |||| ||||| || || ||||| |||||||| || | || ||||| ||||| | | Sbjct 232921 ATCCACTGAAGAAAATACCTTCAACAGCAGCAAATGCAACAAGACGTTCGCCAAATAAGG 232862 Query 13826 CTTTTTTGTTTGATATCCATTTTCTAGCCCATTCAGAtttttttttAATAAAATCCATTG 13885 | | | | ||||| | |||||| |||| || ||||| || || || | Sbjct 232861 CCTCGTCATCACTGATCCAGCGTAAAGCCCAGTCAGCCTTCTTTTTGATGCAAGGAATAG 232802 Query 13886 TTTCGATTGCATTGAATAAATGTTCCTTCTCTTTAG--TACTTGAAATGTATGTATCAAT 13943 | || || |||||||||||| || ||| || | | ||||| || | || || || Sbjct 232801 TCTCAATAGCATTGAATAAAAAGTCTGCCTCCTTGGGGTCCTTGATAT--AGGTGTCGAT 232744 Query 13944 AAGTAAGCTATACATTTCAGAGTGTATGTTTTCTATAGCTATCTGAAAACCATAAAAACA 14003 | ||| || | || ||||| || ||||| || || || ||||| ||||| || Sbjct 232743 CAACAAGGAGTAGGTCTCTGAGTGGATATTTTCCATCATGATTTGGAAACCGTAAAAGCA 232684 Query 14004 TCTAGCTTCTGACCATTGTACCTCCGAGTAAAATCTTTCTGCCAAGTTTTCATTAACAAT 14063 | | ||||||| || ||||| | | || | || ||||||| || |||||||| Sbjct 232683 TTTGGCTTCTGGAATCTGAACCTCGGCAGAGAAGTTCTCCACCAAGTTCTCGTTAACAAT 232624 Query 14064 ACCATCACTAGCTGCAAAAAATGCCAATAT 14093 |||||| ||| || ||||||||||| || Sbjct 232623 ACCATCGGAAGCAGCGAAAAATGCCAAAAT 232594 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 478588680352800