Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Wickerhamia_20fluorescens_20[genbank_20GCA_5F001599155.1_202016-03-
01] 20 sequences; 13,178,500 total letters
Query= NC_004105.1
Length=209771
Score E
Sequences producing significant alignments: (Bits) Value
seq1 264 2e-65
seq5 104 3e-17
>seq1
Length=2974285
Score = 264 bits (292), Expect = 2e-65
Identities = 884/1359 (65%), Gaps = 24/1359 (2%)
Strand=Plus/Minus
Query 71703 AGATGCCAGATTACAAACGGCTACCTCATTAGCATCGGCATATTGTATAATTTCAGTGCA 71762
|||||||| ||||| || || ||||||| | || |||| | ||||||| ||
Sbjct 199973 AGATGCCAAGTTACATACAGCAACCTCATCTGGCGAGGAGTATTCGACAATTTCACAACA 199914
Query 71763 AAGATTACTACACTTGATGGTTCCTAAATTTTGTTGATTACTCTTTTTGTTACACGCATC 71822
| ||| | | |||||| || || || | ||||||| | ||||| || || |||||
Sbjct 199913 CAAATTGGAAGATTTGATGACACCCAAGTTCTTTTGATTAGTTTTTTTATTGCATGCATC 199854
Query 71823 CTTATAAAGAATAAACGGAGTACCAGTTTCAATCTGAGATTCTATAATCGCTTTCCAGAC 71882
|| || | || || || ||||| ||||| | || | || | ||| || | ||| |
Sbjct 199853 TTTGTACAACATGAATGGGGTACCGGTTTCGGTTTGCGCCTCCAAAATGGCGTACCATAA 199794
Query 71883 GACTCGAGCCTTTATTATATT-CTTGTATCTCTTTTCTCTTTCGTATTGTGTATATAATC 71941
||||||| || | || ||| | | ||||| | |||||| | || |||
Sbjct 199793 TTTCTGAGCCTTGATAGTCTTTCTTCCA-CGGTTTTCACGTTCGTACTTCTCGTACAATG 199735
Query 71942 GTTCGAACTCGTCTCCCCAAGCATTGTCTAATCCAGGACATTCATTCGGACACATCAATG 72001
|| ||||| || || || ||| | || || | ||||| ||| | | ||| |
Sbjct 199734 CCTCAAACTCATCACCGTAAACATCGGACAAACCTTGGGCCTCATTAGGAGAGAACAAGG 199675
Query 72002 ACCACTCTCCATCATCATTTACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAA 72061
|||||| ||| | | |||| |||||||| | ||||||||||| | ||| |
Sbjct 199674 TCCACTCAGCATTCTGCTCAACTCTCTTCATAAACAAGTCAGGAATCCACAATGCTGGGA 199615
Query 72062 ATAGATCTCTGGTTCTATGCTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCA 72121
| | |||||| | || || || || || ||||||| ||| ||||| ||| | |
Sbjct 199614 ACAAATCTCTTGCCCTCATTTCTTCCTTACCATGATTCTTTCTAATATCGATGAAATCAA 199555
Query 72122 TAATATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCCCGGCCGTTTGTTTCCTC 72181
||||| | ||||| |||||||| |||| ||| | | || || | || || || |
Sbjct 199554 AGATATCCGCGTGCCATGGTTCCAAATATAAGGCAAATGCACCGGGTCTCTTATTACCAC 199495
Query 72182 CCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCATTGG 72241
||||||| | ||| | ||| |||||||| ||||||| | ||| ||||| |||||||| |
Sbjct 199494 CCTGATCCACGTAACGAGCAGTGTTATTGAAAACTCTAACCATAGGAATGATACCATTAG 199435
Query 72242 ATGCACCATTGGTCCCGGAGATATAGCTTCCACTGGCACGAATATTGCTAATTGATAGAC 72301
| | ||| ||||| || | || ||| ||| | | ||||| ||| || || ||
Sbjct 199434 AGGTACCGTTGGTACCAGCAATGTAGGCACCAGTCGAGCGAATGTTGTGTATGTGTAAAC 199375
Query 72302 CTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGATGCCCT 72361
| || || || || | || || || || || ||| || || |||||||| || || |
Sbjct 199374 CAATACCTCCAGCACTCTTGGAAATCAAGGCACATGTCTTCAAGGTATCATAAATACCGT 199315
Query 72362 CTATACTATCATCCATCATGTTAAGTAGAAAACAGCTAGACATTTG-GTGACGACTAGTT 72420
| ||| |||||| |||| || | ||| || |||||||| | | | | ||
Sbjct 199314 CAATAGAATCATCTTTCATAGCAATCAAAAAGCACGAGGACATTTGAGGGTTGGGT-GTA 199256
Query 72421 CCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGACAGTAGATTGTAC 72480
|| |||||||| || ||||| || |||| ||||| | | | |||| | ||||||
Sbjct 199255 CCAGCATTAAACAAAGTAGGCGAGCCGTGGGTAAAGTGTCTCTGGGACATCATATTGTAA 199196
Query 72481 GTCTCAATAGCTGATTCT----ATATCCCATTGATGTATTCCTACCGCGACACGCATTAA 72536
|| ||||| || ||| || || ||| || || | || || | ||| |
Sbjct 199195 GTTTCAAT----GACTCTGGGAATGTCGTCACCATGAATACCAATGGCAACTCTCATAAT 199140
Query 72537 CATATGCTGAGGTCTTTCAACGATCTTGTTATTTATTTTCAACAAGTAGGATTTTTCCAA 72596
| |||||||||||||| ||| ||| ||| ||| | || | ||| ||| | || ||
Sbjct 199139 TAAGTGCTGAGGTCTTTCTGCGACTTTGCCATTAATTCTTAAAAGGTAAGATCTCTCTAA 199080
Query 72597 AGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAATAACCGAATTGAG 72656
|||||| |||||||| || ||||| ||| || || || | | ||| | || | |
Sbjct 199079 AGTTTTGAAACCAAAGTAATTGTAGTTAAAATCACGATCAAATACAATTGCAGAGTCCAA 199020
Query 72657 TTTATCCTTATATTTGTTAACTATATC-CATGGTGATACT-TGAAATAATCGGAGAATGT 72714
| ||| || ||| ||| || || ||| | | || || || || || || ||
Sbjct 199019 GTCATCAGCGTACTTGGTAATAATGTCGTATGTT--TCCTGGGAGATCATAGGGGAGTGC 198962
Query 72715 TTCCCATTTTTAGGATTAACATAGTTGAATAAATCCT--CCATCACTTCACTAAATAGtt 72772
||| |||| || |||||||||| | || |||| | | ||||| | ||| | |
Sbjct 198961 AAACCAGTTTTGGGGTTAACATAGTCATACAACTCCTTACTAACACTTGA--AAACTGCT 198904
Query 72773 tttttGTTTCCTTGTGTAGATTTGATACGGCTATTCTGGCGGCTAGAATGGCATAATCTG 72832
|| | |||| ||||| | || || || || ||||| || || | || ||||||||||
Sbjct 198903 TTGTAGTTTGTTTGTGCAAGTTAGAAACAGCAATTCTTGCTGCCAAGATAGCATAATCTG 198844
Query 72833 GATGTTGTGTAGTACAAGT-GGCTGCTATTTCTGCTGCCAGAGTGTCCAATTCTACCGTT 72891
| || ||||| || || || || | |||||||| | | || | || | ||
Sbjct 198843 GGTGGATAGTAGT-CATGTATGCGGCAGTCTCTGCTGCTAAGTTATCAAGCTCAATAGTG 198785
Query 72892 GTTACTCCATTATATATTCCTTGGATAACCTTCATAGCTATTTTAATAGGATCTATATGA 72951
|| || || | || | ||| ||||| | || |||| | | ||| | |||
Sbjct 198784 GTAACACCTTGGTACACACCTGAAATAACTCTTTGAGTGATTTGCACGGCATCAACGTGA 198725
Query 72952 TCAGTGTTTAAGCCATAACATAAT-TTTCTAATACGAGACGTGATTTTATCAAACATAAC 73010
| | || |||||||||||||||| | | || | | || || ||||||||||| ||
Sbjct 198724 TTGGAGTCTAAGCCATAACATAATCTCTGTACT-CTAGCAGTAATTTTATCAAAACGGAC 198666
Query 73011 ATTTTCCCGGCATCCATTTCGTTTAACGACAAACATTTT 73049
| || || |||| || |||||| ||| |||||||
Sbjct 198665 AGGCTCTTTGCGACCATGTCTTTTAACCACATACATTTT 198627
Score = 242 bits (268), Expect = 5e-59
Identities = 598/901 (66%), Gaps = 11/901 (1%)
Strand=Plus/Minus
Query 41753 TCTTGAGACATAACTCCCATTTTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTC 41812
|||| || |||||| || |||||||| |||| || | ||||||||||| || |||
Sbjct 233338 TCTT-AGCCATAACACCAGCCTTTTGGTAGTCACTAACTCTCTTTTCGAAAAAGTTGGTC 233280
Query 41813 TTTCCTTCCAATGATATATTTTCCATGAAATCAAACGGATTGGTAACATTATAAAttttt 41872
|||||| |||| || || |||||||| || ||||| ||||| |||||||| |||| |||
Sbjct 233279 TTTCCTGCCAACGAAATGTTTTCCATAAAGTCAAAGGGATTAGTAACATTGTAAACCTTT 233220
Query 41873 ttAAATCCCAATTCAGAAATCAATCTATCTGCGATGAATTCTATATATGTTTTCATCATT 41932
| || ||| | || ||||| || || | || || | || ||||| |
Sbjct 233219 TCGTTGCCTAATGCGACAAGTAATCTGTCGGCAACAAACTCCACGTACTGGCACATCAAT 233160
Query 41933 TCACAATTCATTCCTATAAGTTTAACTGGAAGAGCCACAGTAAGAAATTCTTGTTCAATA 41992
| ||| ||||| || | | || || | ||| |||| | ||| || | |||||||
Sbjct 233159 TTACAGTTCATACCCAACAACGAAATAGGCAAAGCATCAGTGAAAAACTCCTTTTCAATA 233100
Query 41993 GAGACCGCGTCTGTTATAATAGATCTT-ACTGTTTCTTCACTCGGTGGATACAATAAATG 42051
| || || ||||| ||||| ||| || | | || ||| | || ||
Sbjct 233099 GCAACGGCCTCTGTGATAATCT-TCTCGACAATAGCAGCATCGGGTCTGTTTTGCAAGTG 233041
Query 42052 TTTAAACATCAAACATGCGAAATCGCAGTGCAGACCCTCATCTCTACTAATTAATTCGTT 42111
|| | ||| || || |||||| ||||| ||||||||| | | ||||| |||||
Sbjct 233040 GGAGAATAACAAGCAAGCAAAATCGGTGTGCAAACCCTCATCACGGCAGATTAACTCGTT 232981
Query 42112 GGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATAGACGCAAATGA 42171
||| || || | || ||||| | ||| | ||| || | |||||| || || ||||| ||
Sbjct 232980 GGAGAAAGTCAAACCAGGCATCAAGCCTCTCTTCTTCAACCAAAAGATGGATGCAAACGA 232921
Query 42172 TCCAGAAAAGAAGATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATAACCGGC 42231
|||| ||||| || ||||| || || ||||| |||| ||| | || ||| | |||
Sbjct 232920 TCCACTGAAGAAAATACCTTCAACAGCAGCAAATGCAACAAGACGTTCGCCAAATAAGGC 232861
Query 42232 ACTGTCATGT---ATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGT 42288
||||| ||||| | |||||| || ||||||||||| | ||||| || ||
Sbjct 232860 CTCGTCATCACTGATCCAGCGTAAAGCCCAGTCAGCCTTCTTTTTGATGCAAGGAATAGT 232801
Query 42289 TTCTATGGCATTAAAGAGATAGtttttttCATTACTATCTTTAACATATGTATCGATCAA 42348
|| || ||||| || | | ||| | || || || || | ||| || ||||||||
Sbjct 232800 CTCAATAGCATTGAATAAAAAGTCTGCCTCCTTGGGGTCCTTGATATAGGTGTCGATCAA 232741
Query 42349 AAGACTATACATTTCTGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCT 42408
| || | ||||| || || ||||| || || || || ||||| || ||| |
Sbjct 232740 CAAGGAGTAGGTCTCTGAGTGGATATTTTCCATCATGATTTGGAAACCGTAAAAGCATTT 232681
Query 42409 GGCCTCGGTAACCTGTACTTCTGTACAAAATCGTTCAGCTAAATTTTCGTTCACTATTCC 42468
||| || | || ||| || || | | | || || | || || ||||| || || ||
Sbjct 232680 GGCTTCTGGAATCTGAACCTCGGCAGAGAAGTTCTCCACCAAGTTCTCGTTAACAATACC 232621
Query 42469 GTCACTGGCTGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTCCGGTGTTAA 42528
|| || || ||||| ||||| | | | || || | |||| | ||| |
Sbjct 232620 ATCGGAAGCAGCGAAAAATGCCAAAATACGGGAAATGAAGAAACGCTCGT-TGTCGTTCA 232562
Query 42529 ----TTTATTCCAATCATTGATATCTTTAGATATATCTACTTCTTCTACCGTCCAAAATG 42584
|| ||||| |||| | ||||| | ||| | ||| ||| | |||||||| |
Sbjct 232561 AGCGATTGTTCCAGTCATGAGTGTCTTTTCCCAAATCGATTTCCTCTGCAGTCCAAAAAG 232502
Query 42585 ATGCTTCTGCCTTTTTATACATATTCCAGATATCATGATATTGAATTGGGAAAATAACAA 42644
|||||||||| || || ||||| | ||| || || || |||| ||| ||||||| |||||
Sbjct 232501 ATGCTTCTGCTTTCTTGTACATTTGCCAAATCTCGTGGTATTTAATAGGGAAAAGAACAA 232442
Query 42645 A 42645
|
Sbjct 232441 A 232441
>seq5
Length=1501106
Score = 104 bits (114), Expect = 3e-17
Identities = 364/565 (64%), Gaps = 4/565 (1%)
Strand=Plus/Minus
Query 71749 ATAATTTCAGTGCAAAGATTACTACACTTGATGGTTCCTAAATTTTGTTGATTACTCTTT 71808
|||||||| ||| ||||| |||| || || |||| ||||| || || |||
Sbjct 762084 ATAATTTCGCAGCATAGATTGGATGACTTAATTGTCCCTAGATTTTTCTGGTTTGATTTT 762025
Query 71809 TTGTTACACGCATCCTTATAAAGAATAAACGGAGTACCAGTTTCAATCTGAGATTCTATA 71868
|||||| ||||| ||||| | || |||| || ||||| | || ||||||| |
Sbjct 762024 GAGTTACATGCATCTTTATATAACATGTACGGCCCTCCTGTTTCTGTTTGGGATTCTAAA 761965
Query 71869 ATCGCTTTCCAGACGACTCGAGCCTTTATTATATTCTTGTATCTCTTTTCTCTTTCGTAT 71928
|| ||| ||| | | ||||| ||| || ||| || ||| || ||
Sbjct 761964 ATGGCTAGCCATAATTTCTGCGCCTTAATTGTAACTTTGGCTCGACCTTCAGACTCATAG 761905
Query 71929 TGTGTATATAATCGTTCGAACTCGTCTCCCCAAGCATTGTCTAATCCAGGACATTCATTC 71988
| ||||| | || || ||||| || || ||| || |||||| |||||
Sbjct 761904 GATTCGTATAACTTGACAAAGTCATCTCCGTAACAATCGTCCAACCCAGGAGCTTCATCT 761845
Query 71989 GGACACATCAATGACCACTCTCCATCATCATTTACTCGTTTCATAAAGAGATCAGGAATC 72048
|| | | ||||||||| ||| || | || |||| ||||| || | ||| | |||
Sbjct 761844 GGTGAAAACAATGACCATTCTAGATTTTGCTTAACTCTCTTCATGAATAAATCGGATATC 761785
Query 72049 CAAAGAGCTATAAATAGATCTCTGGTTC-TATGCTCCTCGTTTCCTGT-ATTCTTTTTAA 72106
|| || | ||||| ||||||||||| || | || |||| | || ||| || || |
Sbjct 761784 CATAGTCCATAAAATAAATCTCTGGTTCGCAT--TTCTTGTTTGCCGTGATTTTTCTTTA 761727
Query 72107 GATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCCCG 72166
|| ||| | | | |||||| ||||||| || || | ||||| || | | | || |
Sbjct 761726 AATTGAGTACATCGAATATATCACAATGCCATGGCTCAATGTATACTGCAAAAGCACCTG 761667
Query 72167 GCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTG 72226
| | | ||||| ||||| | ||||| || || | ||| | |||| |||||| |
Sbjct 761666 GTCTCCGACTACCTCCTTGATCAACATATCTTGCAGTTTCATTGAATACTCGCAACATGG 761607
Query 72227 GAATAATACCATTGGATGCACCATTGGTCCCGGAGATATAGCTTCCACTGGCACGAATAT 72286
|||| || ||| | |||| ||||| | | | ||| ||| |||| | | |||| ||
Sbjct 761606 GAATTATTCCAGTTGATGTTCCATTTGAGCTAGCGATGTAGGATCCATTACCCCGAACAT 761547
Query 72287 TGCTAATTGATAGACCTATTCCCCC 72311
| ||| || |||||||| ||
Sbjct 761546 TATGAATATGTAAGCCTATTCCACC 761522
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 671139032215200
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