Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Wickerhamia_20fluorescens_20[genbank_20GCA_5F001599155.1_202016-03- 01] 20 sequences; 13,178,500 total letters Query= NC_004105.1 Length=209771 Score E Sequences producing significant alignments: (Bits) Value seq1 264 2e-65 seq5 104 3e-17 >seq1 Length=2974285 Score = 264 bits (292), Expect = 2e-65 Identities = 884/1359 (65%), Gaps = 24/1359 (2%) Strand=Plus/Minus Query 71703 AGATGCCAGATTACAAACGGCTACCTCATTAGCATCGGCATATTGTATAATTTCAGTGCA 71762 |||||||| ||||| || || ||||||| | || |||| | ||||||| || Sbjct 199973 AGATGCCAAGTTACATACAGCAACCTCATCTGGCGAGGAGTATTCGACAATTTCACAACA 199914 Query 71763 AAGATTACTACACTTGATGGTTCCTAAATTTTGTTGATTACTCTTTTTGTTACACGCATC 71822 | ||| | | |||||| || || || | ||||||| | ||||| || || ||||| Sbjct 199913 CAAATTGGAAGATTTGATGACACCCAAGTTCTTTTGATTAGTTTTTTTATTGCATGCATC 199854 Query 71823 CTTATAAAGAATAAACGGAGTACCAGTTTCAATCTGAGATTCTATAATCGCTTTCCAGAC 71882 || || | || || || ||||| ||||| | || | || | ||| || | ||| | Sbjct 199853 TTTGTACAACATGAATGGGGTACCGGTTTCGGTTTGCGCCTCCAAAATGGCGTACCATAA 199794 Query 71883 GACTCGAGCCTTTATTATATT-CTTGTATCTCTTTTCTCTTTCGTATTGTGTATATAATC 71941 ||||||| || | || ||| | | ||||| | |||||| | || ||| Sbjct 199793 TTTCTGAGCCTTGATAGTCTTTCTTCCA-CGGTTTTCACGTTCGTACTTCTCGTACAATG 199735 Query 71942 GTTCGAACTCGTCTCCCCAAGCATTGTCTAATCCAGGACATTCATTCGGACACATCAATG 72001 || ||||| || || || ||| | || || | ||||| ||| | | ||| | Sbjct 199734 CCTCAAACTCATCACCGTAAACATCGGACAAACCTTGGGCCTCATTAGGAGAGAACAAGG 199675 Query 72002 ACCACTCTCCATCATCATTTACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAA 72061 |||||| ||| | | |||| |||||||| | ||||||||||| | ||| | Sbjct 199674 TCCACTCAGCATTCTGCTCAACTCTCTTCATAAACAAGTCAGGAATCCACAATGCTGGGA 199615 Query 72062 ATAGATCTCTGGTTCTATGCTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCA 72121 | | |||||| | || || || || || ||||||| ||| ||||| ||| | | Sbjct 199614 ACAAATCTCTTGCCCTCATTTCTTCCTTACCATGATTCTTTCTAATATCGATGAAATCAA 199555 Query 72122 TAATATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCCCGGCCGTTTGTTTCCTC 72181 ||||| | ||||| |||||||| |||| ||| | | || || | || || || | Sbjct 199554 AGATATCCGCGTGCCATGGTTCCAAATATAAGGCAAATGCACCGGGTCTCTTATTACCAC 199495 Query 72182 CCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCATTGG 72241 ||||||| | ||| | ||| |||||||| ||||||| | ||| ||||| |||||||| | Sbjct 199494 CCTGATCCACGTAACGAGCAGTGTTATTGAAAACTCTAACCATAGGAATGATACCATTAG 199435 Query 72242 ATGCACCATTGGTCCCGGAGATATAGCTTCCACTGGCACGAATATTGCTAATTGATAGAC 72301 | | ||| ||||| || | || ||| ||| | | ||||| ||| || || || Sbjct 199434 AGGTACCGTTGGTACCAGCAATGTAGGCACCAGTCGAGCGAATGTTGTGTATGTGTAAAC 199375 Query 72302 CTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGATGCCCT 72361 | || || || || | || || || || || ||| || || |||||||| || || | Sbjct 199374 CAATACCTCCAGCACTCTTGGAAATCAAGGCACATGTCTTCAAGGTATCATAAATACCGT 199315 Query 72362 CTATACTATCATCCATCATGTTAAGTAGAAAACAGCTAGACATTTG-GTGACGACTAGTT 72420 | ||| |||||| |||| || | ||| || |||||||| | | | | || Sbjct 199314 CAATAGAATCATCTTTCATAGCAATCAAAAAGCACGAGGACATTTGAGGGTTGGGT-GTA 199256 Query 72421 CCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGACAGTAGATTGTAC 72480 || |||||||| || ||||| || |||| ||||| | | | |||| | |||||| Sbjct 199255 CCAGCATTAAACAAAGTAGGCGAGCCGTGGGTAAAGTGTCTCTGGGACATCATATTGTAA 199196 Query 72481 GTCTCAATAGCTGATTCT----ATATCCCATTGATGTATTCCTACCGCGACACGCATTAA 72536 || ||||| || ||| || || ||| || || | || || | ||| | Sbjct 199195 GTTTCAAT----GACTCTGGGAATGTCGTCACCATGAATACCAATGGCAACTCTCATAAT 199140 Query 72537 CATATGCTGAGGTCTTTCAACGATCTTGTTATTTATTTTCAACAAGTAGGATTTTTCCAA 72596 | |||||||||||||| ||| ||| ||| ||| | || | ||| ||| | || || Sbjct 199139 TAAGTGCTGAGGTCTTTCTGCGACTTTGCCATTAATTCTTAAAAGGTAAGATCTCTCTAA 199080 Query 72597 AGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAATAACCGAATTGAG 72656 |||||| |||||||| || ||||| ||| || || || | | ||| | || | | Sbjct 199079 AGTTTTGAAACCAAAGTAATTGTAGTTAAAATCACGATCAAATACAATTGCAGAGTCCAA 199020 Query 72657 TTTATCCTTATATTTGTTAACTATATC-CATGGTGATACT-TGAAATAATCGGAGAATGT 72714 | ||| || ||| ||| || || ||| | | || || || || || || || Sbjct 199019 GTCATCAGCGTACTTGGTAATAATGTCGTATGTT--TCCTGGGAGATCATAGGGGAGTGC 198962 Query 72715 TTCCCATTTTTAGGATTAACATAGTTGAATAAATCCT--CCATCACTTCACTAAATAGtt 72772 ||| |||| || |||||||||| | || |||| | | ||||| | ||| | | Sbjct 198961 AAACCAGTTTTGGGGTTAACATAGTCATACAACTCCTTACTAACACTTGA--AAACTGCT 198904 Query 72773 tttttGTTTCCTTGTGTAGATTTGATACGGCTATTCTGGCGGCTAGAATGGCATAATCTG 72832 || | |||| ||||| | || || || || ||||| || || | || |||||||||| Sbjct 198903 TTGTAGTTTGTTTGTGCAAGTTAGAAACAGCAATTCTTGCTGCCAAGATAGCATAATCTG 198844 Query 72833 GATGTTGTGTAGTACAAGT-GGCTGCTATTTCTGCTGCCAGAGTGTCCAATTCTACCGTT 72891 | || ||||| || || || || | |||||||| | | || | || | || Sbjct 198843 GGTGGATAGTAGT-CATGTATGCGGCAGTCTCTGCTGCTAAGTTATCAAGCTCAATAGTG 198785 Query 72892 GTTACTCCATTATATATTCCTTGGATAACCTTCATAGCTATTTTAATAGGATCTATATGA 72951 || || || | || | ||| ||||| | || |||| | | ||| | ||| Sbjct 198784 GTAACACCTTGGTACACACCTGAAATAACTCTTTGAGTGATTTGCACGGCATCAACGTGA 198725 Query 72952 TCAGTGTTTAAGCCATAACATAAT-TTTCTAATACGAGACGTGATTTTATCAAACATAAC 73010 | | || |||||||||||||||| | | || | | || || ||||||||||| || Sbjct 198724 TTGGAGTCTAAGCCATAACATAATCTCTGTACT-CTAGCAGTAATTTTATCAAAACGGAC 198666 Query 73011 ATTTTCCCGGCATCCATTTCGTTTAACGACAAACATTTT 73049 | || || |||| || |||||| ||| ||||||| Sbjct 198665 AGGCTCTTTGCGACCATGTCTTTTAACCACATACATTTT 198627 Score = 242 bits (268), Expect = 5e-59 Identities = 598/901 (66%), Gaps = 11/901 (1%) Strand=Plus/Minus Query 41753 TCTTGAGACATAACTCCCATTTTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTC 41812 |||| || |||||| || |||||||| |||| || | ||||||||||| || ||| Sbjct 233338 TCTT-AGCCATAACACCAGCCTTTTGGTAGTCACTAACTCTCTTTTCGAAAAAGTTGGTC 233280 Query 41813 TTTCCTTCCAATGATATATTTTCCATGAAATCAAACGGATTGGTAACATTATAAAttttt 41872 |||||| |||| || || |||||||| || ||||| ||||| |||||||| |||| ||| Sbjct 233279 TTTCCTGCCAACGAAATGTTTTCCATAAAGTCAAAGGGATTAGTAACATTGTAAACCTTT 233220 Query 41873 ttAAATCCCAATTCAGAAATCAATCTATCTGCGATGAATTCTATATATGTTTTCATCATT 41932 | || ||| | || ||||| || || | || || | || ||||| | Sbjct 233219 TCGTTGCCTAATGCGACAAGTAATCTGTCGGCAACAAACTCCACGTACTGGCACATCAAT 233160 Query 41933 TCACAATTCATTCCTATAAGTTTAACTGGAAGAGCCACAGTAAGAAATTCTTGTTCAATA 41992 | ||| ||||| || | | || || | ||| |||| | ||| || | ||||||| Sbjct 233159 TTACAGTTCATACCCAACAACGAAATAGGCAAAGCATCAGTGAAAAACTCCTTTTCAATA 233100 Query 41993 GAGACCGCGTCTGTTATAATAGATCTT-ACTGTTTCTTCACTCGGTGGATACAATAAATG 42051 | || || ||||| ||||| ||| || | | || ||| | || || Sbjct 233099 GCAACGGCCTCTGTGATAATCT-TCTCGACAATAGCAGCATCGGGTCTGTTTTGCAAGTG 233041 Query 42052 TTTAAACATCAAACATGCGAAATCGCAGTGCAGACCCTCATCTCTACTAATTAATTCGTT 42111 || | ||| || || |||||| ||||| ||||||||| | | ||||| ||||| Sbjct 233040 GGAGAATAACAAGCAAGCAAAATCGGTGTGCAAACCCTCATCACGGCAGATTAACTCGTT 232981 Query 42112 GGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATAGACGCAAATGA 42171 ||| || || | || ||||| | ||| | ||| || | |||||| || || ||||| || Sbjct 232980 GGAGAAAGTCAAACCAGGCATCAAGCCTCTCTTCTTCAACCAAAAGATGGATGCAAACGA 232921 Query 42172 TCCAGAAAAGAAGATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATAACCGGC 42231 |||| ||||| || ||||| || || ||||| |||| ||| | || ||| | ||| Sbjct 232920 TCCACTGAAGAAAATACCTTCAACAGCAGCAAATGCAACAAGACGTTCGCCAAATAAGGC 232861 Query 42232 ACTGTCATGT---ATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGT 42288 ||||| ||||| | |||||| || ||||||||||| | ||||| || || Sbjct 232860 CTCGTCATCACTGATCCAGCGTAAAGCCCAGTCAGCCTTCTTTTTGATGCAAGGAATAGT 232801 Query 42289 TTCTATGGCATTAAAGAGATAGtttttttCATTACTATCTTTAACATATGTATCGATCAA 42348 || || ||||| || | | ||| | || || || || | ||| || |||||||| Sbjct 232800 CTCAATAGCATTGAATAAAAAGTCTGCCTCCTTGGGGTCCTTGATATAGGTGTCGATCAA 232741 Query 42349 AAGACTATACATTTCTGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCT 42408 | || | ||||| || || ||||| || || || || ||||| || ||| | Sbjct 232740 CAAGGAGTAGGTCTCTGAGTGGATATTTTCCATCATGATTTGGAAACCGTAAAAGCATTT 232681 Query 42409 GGCCTCGGTAACCTGTACTTCTGTACAAAATCGTTCAGCTAAATTTTCGTTCACTATTCC 42468 ||| || | || ||| || || | | | || || | || || ||||| || || || Sbjct 232680 GGCTTCTGGAATCTGAACCTCGGCAGAGAAGTTCTCCACCAAGTTCTCGTTAACAATACC 232621 Query 42469 GTCACTGGCTGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTCCGGTGTTAA 42528 || || || ||||| ||||| | | | || || | |||| | ||| | Sbjct 232620 ATCGGAAGCAGCGAAAAATGCCAAAATACGGGAAATGAAGAAACGCTCGT-TGTCGTTCA 232562 Query 42529 ----TTTATTCCAATCATTGATATCTTTAGATATATCTACTTCTTCTACCGTCCAAAATG 42584 || ||||| |||| | ||||| | ||| | ||| ||| | |||||||| | Sbjct 232561 AGCGATTGTTCCAGTCATGAGTGTCTTTTCCCAAATCGATTTCCTCTGCAGTCCAAAAAG 232502 Query 42585 ATGCTTCTGCCTTTTTATACATATTCCAGATATCATGATATTGAATTGGGAAAATAACAA 42644 |||||||||| || || ||||| | ||| || || || |||| ||| ||||||| ||||| Sbjct 232501 ATGCTTCTGCTTTCTTGTACATTTGCCAAATCTCGTGGTATTTAATAGGGAAAAGAACAA 232442 Query 42645 A 42645 | Sbjct 232441 A 232441 >seq5 Length=1501106 Score = 104 bits (114), Expect = 3e-17 Identities = 364/565 (64%), Gaps = 4/565 (1%) Strand=Plus/Minus Query 71749 ATAATTTCAGTGCAAAGATTACTACACTTGATGGTTCCTAAATTTTGTTGATTACTCTTT 71808 |||||||| ||| ||||| |||| || || |||| ||||| || || ||| Sbjct 762084 ATAATTTCGCAGCATAGATTGGATGACTTAATTGTCCCTAGATTTTTCTGGTTTGATTTT 762025 Query 71809 TTGTTACACGCATCCTTATAAAGAATAAACGGAGTACCAGTTTCAATCTGAGATTCTATA 71868 |||||| ||||| ||||| | || |||| || ||||| | || ||||||| | Sbjct 762024 GAGTTACATGCATCTTTATATAACATGTACGGCCCTCCTGTTTCTGTTTGGGATTCTAAA 761965 Query 71869 ATCGCTTTCCAGACGACTCGAGCCTTTATTATATTCTTGTATCTCTTTTCTCTTTCGTAT 71928 || ||| ||| | | ||||| ||| || ||| || ||| || || Sbjct 761964 ATGGCTAGCCATAATTTCTGCGCCTTAATTGTAACTTTGGCTCGACCTTCAGACTCATAG 761905 Query 71929 TGTGTATATAATCGTTCGAACTCGTCTCCCCAAGCATTGTCTAATCCAGGACATTCATTC 71988 | ||||| | || || ||||| || || ||| || |||||| ||||| Sbjct 761904 GATTCGTATAACTTGACAAAGTCATCTCCGTAACAATCGTCCAACCCAGGAGCTTCATCT 761845 Query 71989 GGACACATCAATGACCACTCTCCATCATCATTTACTCGTTTCATAAAGAGATCAGGAATC 72048 || | | ||||||||| ||| || | || |||| ||||| || | ||| | ||| Sbjct 761844 GGTGAAAACAATGACCATTCTAGATTTTGCTTAACTCTCTTCATGAATAAATCGGATATC 761785 Query 72049 CAAAGAGCTATAAATAGATCTCTGGTTC-TATGCTCCTCGTTTCCTGT-ATTCTTTTTAA 72106 || || | ||||| ||||||||||| || | || |||| | || ||| || || | Sbjct 761784 CATAGTCCATAAAATAAATCTCTGGTTCGCAT--TTCTTGTTTGCCGTGATTTTTCTTTA 761727 Query 72107 GATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCCCG 72166 || ||| | | | |||||| ||||||| || || | ||||| || | | | || | Sbjct 761726 AATTGAGTACATCGAATATATCACAATGCCATGGCTCAATGTATACTGCAAAAGCACCTG 761667 Query 72167 GCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTG 72226 | | | ||||| ||||| | ||||| || || | ||| | |||| |||||| | Sbjct 761666 GTCTCCGACTACCTCCTTGATCAACATATCTTGCAGTTTCATTGAATACTCGCAACATGG 761607 Query 72227 GAATAATACCATTGGATGCACCATTGGTCCCGGAGATATAGCTTCCACTGGCACGAATAT 72286 |||| || ||| | |||| ||||| | | | ||| ||| |||| | | |||| || Sbjct 761606 GAATTATTCCAGTTGATGTTCCATTTGAGCTAGCGATGTAGGATCCATTACCCCGAACAT 761547 Query 72287 TGCTAATTGATAGACCTATTCCCCC 72311 | ||| || |||||||| || Sbjct 761546 TATGAATATGTAAGCCTATTCCACC 761522 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 671139032215200