Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Wickerhamia_20fluorescens_20[genbank_20GCA_5F001599155.1_202016-03- 01] 20 sequences; 13,178,500 total letters Query= NC_004117.1 Length=158482 Score E Sequences producing significant alignments: (Bits) Value seq1 127 2e-24 >seq1 Length=2974285 Score = 127 bits (140), Expect = 2e-24 Identities = 304/447 (68%), Gaps = 21/447 (5%) Strand=Plus/Plus Query 50401 CTTACTTTGGCCGAACGTTTAGTGGCGTTTGCCATAGTTGAAGGTGTGtttttttCCG-G 50459 |||| |||||| |||||| | || || ||||| ||||||||| | ||| ||| | | Sbjct 232863 CTTA-TTTGGC-GAACGTCTTGTTGCATTTGCTGCTGTTGAAGGTAT--TTTCTTCAGTG 232918 Query 50460 TAGC-TTTGCAGCCATATTTTACATTAAAACCTTAGGCATAATGCCCGGCCTCACGTTTA 50518 | | |||||| |||| |||| | || | |||| | ||||| || | || || Sbjct 232919 GATCGTTTGCATCCATCTTTTGGTTGAAGAAGAGAGGCTTGATGCCTGGTTTGACTTTCT 232978 Query 50519 GCAACGAGTTGATTTCGCGCGACGAAGGAATGCACACAGACTTTGCGTGTTTGTACTACA 50578 ||||||||| || | || || || || ||||||| || ||||| || |||| Sbjct 232979 CCAACGAGTTAATCTGCCGTGATGAGGGTTTGCACACCGATTTTGCTTGCTTGTT----- 233033 Query 50579 ATACGCGCGTAAATGAAAAATT-ATCATACGAAACAATTTTGGACATGTT---CAAAGAA 50634 || | | | | || |||| | | | | | ||| | || | | | || ||| Sbjct 233034 ATTCTCCC--ACTTGCAAAACAGACCCGATGCTGCTATTGTCGAGAAGATTATCACAGAG 233091 Query 50635 GCCGTCGACATCGAAAAAGAGTTTTTCACGGACGCTTTACCCGTGGCATTGTTGGGCATG 50694 ||||| | || ||||| ||||||||||| || ||||| || | | |||||||| ||| Sbjct 233092 GCCGTTGCTATTGAAAAGGAGTTTTTCACTGATGCTTTGCCTATTTCGTTGTTGGGTATG 233151 Query 50695 AACGCAGACATGATGTGCGAGTACATTGAGTTTGTTGCAGACAGATT-GTTGTTGCAGCT 50753 ||| | |||||||| ||||| | ||||||||||| |||||||| |||| ||| | Sbjct 233152 AACTGTAAATTGATGTGCCAGTACGTGGAGTTTGTTGCCGACAGATTACTTGTCGCA--T 233209 Query 50754 GGGACAACCGAAA-TACTATAATGCACGTAACCCCTTTCCGTTTATGAATAACATATCGT 50812 | |||| ||| || |||| ||| |||||| |||||| | ||||| |||| Sbjct 233210 TAGGCAACGAAAAGGTTTACAATGTTACTAATCCCTTTGACTTTATGGAAAACATTTCGT 233269 Query 50813 TGGAGGGCAAAACAAACTTTTTCGAAA 50839 ||| || || || ||||||||||||| Sbjct 233270 TGGCAGGAAAGACCAACTTTTTCGAAA 233296 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 507014273246400