Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Wickerhamia_20fluorescens_20[genbank_20GCA_5F001599155.1_202016-03-
01] 20 sequences; 13,178,500 total letters
Query= NC_004117.1
Length=158482
Score E
Sequences producing significant alignments: (Bits) Value
seq1 127 2e-24
>seq1
Length=2974285
Score = 127 bits (140), Expect = 2e-24
Identities = 304/447 (68%), Gaps = 21/447 (5%)
Strand=Plus/Plus
Query 50401 CTTACTTTGGCCGAACGTTTAGTGGCGTTTGCCATAGTTGAAGGTGTGtttttttCCG-G 50459
|||| |||||| |||||| | || || ||||| ||||||||| | ||| ||| | |
Sbjct 232863 CTTA-TTTGGC-GAACGTCTTGTTGCATTTGCTGCTGTTGAAGGTAT--TTTCTTCAGTG 232918
Query 50460 TAGC-TTTGCAGCCATATTTTACATTAAAACCTTAGGCATAATGCCCGGCCTCACGTTTA 50518
| | |||||| |||| |||| | || | |||| | ||||| || | || ||
Sbjct 232919 GATCGTTTGCATCCATCTTTTGGTTGAAGAAGAGAGGCTTGATGCCTGGTTTGACTTTCT 232978
Query 50519 GCAACGAGTTGATTTCGCGCGACGAAGGAATGCACACAGACTTTGCGTGTTTGTACTACA 50578
||||||||| || | || || || || ||||||| || ||||| || ||||
Sbjct 232979 CCAACGAGTTAATCTGCCGTGATGAGGGTTTGCACACCGATTTTGCTTGCTTGTT----- 233033
Query 50579 ATACGCGCGTAAATGAAAAATT-ATCATACGAAACAATTTTGGACATGTT---CAAAGAA 50634
|| | | | | || |||| | | | | | ||| | || | | | || |||
Sbjct 233034 ATTCTCCC--ACTTGCAAAACAGACCCGATGCTGCTATTGTCGAGAAGATTATCACAGAG 233091
Query 50635 GCCGTCGACATCGAAAAAGAGTTTTTCACGGACGCTTTACCCGTGGCATTGTTGGGCATG 50694
||||| | || ||||| ||||||||||| || ||||| || | | |||||||| |||
Sbjct 233092 GCCGTTGCTATTGAAAAGGAGTTTTTCACTGATGCTTTGCCTATTTCGTTGTTGGGTATG 233151
Query 50695 AACGCAGACATGATGTGCGAGTACATTGAGTTTGTTGCAGACAGATT-GTTGTTGCAGCT 50753
||| | |||||||| ||||| | ||||||||||| |||||||| |||| ||| |
Sbjct 233152 AACTGTAAATTGATGTGCCAGTACGTGGAGTTTGTTGCCGACAGATTACTTGTCGCA--T 233209
Query 50754 GGGACAACCGAAA-TACTATAATGCACGTAACCCCTTTCCGTTTATGAATAACATATCGT 50812
| |||| ||| || |||| ||| |||||| |||||| | ||||| ||||
Sbjct 233210 TAGGCAACGAAAAGGTTTACAATGTTACTAATCCCTTTGACTTTATGGAAAACATTTCGT 233269
Query 50813 TGGAGGGCAAAACAAACTTTTTCGAAA 50839
||| || || || |||||||||||||
Sbjct 233270 TGGCAGGAAAGACCAACTTTTTCGAAA 233296
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 507014273246400
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |