Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Wickerhamia_20fluorescens_20[genbank_20GCA_5F001599155.1_202016-03- 01] 20 sequences; 13,178,500 total letters Query= NC_004156.2 Length=231621 Score E Sequences producing significant alignments: (Bits) Value seq1 127 3e-24 >seq1 Length=2974285 Score = 127 bits (140), Expect = 3e-24 Identities = 562/881 (64%), Gaps = 18/881 (2%) Strand=Plus/Plus Query 124998 TTTCCC-ATCAGGTATCATGACATTTGGGAAATGTACAAAAAGGCTCAGGCCTCCTTTTG 125056 |||||| || | || || || |||||| |||||||||| || || | || || ||||| Sbjct 232449 TTTCCCTATTAAATACCACGAGATTTGGCAAATGTACAAGAAAGCAGAAGCATCTTTTTG 232508 Query 125057 GACGGTCGAAGAGGTCGATCTGTCCAAGGACCTGTACGATTGGGAGACTCGTTTGACTGA 125116 ||| | || || ||||| || || ||| | || ||| | | ||| |||| || Sbjct 232509 GACTGCAGAGGAAATCGATTTGGGAAAAGACACTCATGACTGGAACAATCGCTTGAACGA 232568 Query 125117 AACTGAGCGAGAGTTTATATCGCACATTTTGGCCTTCTTTGCCGGCTCCGATGGAATCGT 125176 | ||||| || || || | |||||||| || || || | |||||||| || || Sbjct 232569 CAACGAGCGTTTCTTCATTTCCCGTATTTTGGCATTTTTCGCTGCTTCCGATGGTATTGT 232628 Query 125177 CAACGACAATCTGTTGACACGATTCTCTCAAGAGTTGACCATTCCAGAGGTGTCGTGCTT 125236 ||||| || || || |||||| ||| | |||||||| | ||||| Sbjct 232629 TAACGAGAACTTGGTGGAGAACTTCTCTGCCGAGGTTCAGATTCCAGAAGCCAAATGCTT 232688 Query 125237 TTACGGATTCCAAATCATGATTGAGAACGTGCACTCGGAAATGTACTCTACACTGATTGA 125296 |||||| |||||||||||||| || || | ||||| || | ||||| |||| || Sbjct 232689 TTACGGTTTCCAAATCATGATGGAAAATATCCACTCAGAGACCTACTCCTTGTTGATCGA 232748 Query 125297 CATGTACATTCGCGATCCGCAACG-TAAACACATGCTCTTTAACGCAATCGACACGGTGC 125355 || || | || | || ||| | | || | | || || || || || || | | Sbjct 232749 CACCTATA-TCAAGGACCCCAAGGAGGCAGACTTTTTATTCAATGCTATTGAGACTATTC 232807 Query 125356 CGTCTATACGTAAAAAGGCTCAATGGGTGATTCGGTGGATCGATGACGACAAGTCTTCGT 125415 | | || || |||||| | |||| | || |||||| ||| ||| || | | | Sbjct 232808 CTTGCATCAAAAAGAAGGCTGACTGGGCTTTACGCTGGATCAGTGATGACGAGGCCTTAT 232867 Query 125416 ACGCCGACAGACTGGTGGCATTCGCCGCCGTAGAGGGCATCTTCTTTTCGGGTAGTTTTG 125475 | ||| | || || ||||| || || || || || || ||||| || |||| Sbjct 232868 TTGGCGAACGTCTTGTTGCATTTGCTGCTGTTGAAGGTATTTTCTTCAGTGGATCGTTTG 232927 Query 125476 CGGCCATCTTTTGGCTCAAGAAGCGCGGACTCATGCCCGGACTGACGCACAGTAACGAGT 125535 | ||||||||||| | |||||| | || | ||||| || |||| | ||||||| Sbjct 232928 CATCCATCTTTTGGTTGAAGAAGAGAGGCTTGATGCCTGGTTTGACTTTCTCCAACGAGT 232987 Query 125536 TTATATCTCGAGACGAGGGCCTACACTGTGACTTTGCCATTCTACTGTTTCGCAACTATC 125595 | || | || || ||||| | ||| || |||| | | || |||| | | | Sbjct 232988 TAATCTGCCGTGATGAGGGTTTGCACACCGATTTTG-CTTGCT--TGTTATTCTCCCACT 233044 Query 125596 TGCGTCCCGAGTGCAGATCCAGCGATGAAAAGGTCATCAACATTGTAACCGATGCCGTGA 125655 ||| | |||| || | || | ||| || ||| | || || ||||| Sbjct 233045 TGC------AAAACAGACCCGATGCTGCTATTGTCGAGAAGATTATCACAGAGGCCGTTG 233098 Query 125656 GGATAGAACAAGAGTTTCTAACCGAATCCCTACCGGTCAGCATGATTGGCATGAACTGCA 125715 || ||| | |||||| | || || | | || | || | || |||||||| | Sbjct 233099 CTATTGAAAAGGAGTTTTTCACTGATGCTTTGCCTATTTCGTTGTTGGGTATGAACTGTA 233158 Query 125716 AGCTAATGTGCGAGTACATAGAGTTTGTGGCAGATCGTCTACTGTACGAGTTGATTGGC- 125774 | | |||||| ||||| | |||||||| || || | |||| || | | ||| Sbjct 233159 AATTGATGTGCCAGTACGTGGAGTTTGTTGCCGACAGATTACTTGTCGCAT---TAGGCA 233215 Query 125775 -CG-CAAGATTTACAACGCCAAGAATCCCTTTGATTTCATGACCAGCATATCACTAGAGG 125832 || ||| ||||||| | | ||||||||||| || ||| | ||| || | | | Sbjct 233216 ACGAAAAGGTTTACAATGTTACTAATCCCTTTGACTTTATGGAAAACATTTCGTTGGCAG 233275 Query 125833 GTAAGACCAACTTTTTCGAGAAGAAGGTCAGCGAGTACAAA 125873 | ||||||||||||||||| |||| || || || ||| || Sbjct 233276 GAAAGACCAACTTTTTCGAAAAGAGAGTTAGTGACTACCAA 233316 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 741059014735200