Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Wickerhamia_20fluorescens_20[genbank_20GCA_5F001599155.1_202016-03- 01] 20 sequences; 13,178,500 total letters Query= NC_004690.1 Length=113220 Score E Sequences producing significant alignments: (Bits) Value seq1 118 8e-22 seq7 116 3e-21 >seq1 Length=2974285 Score = 118 bits (130), Expect = 8e-22 Identities = 163/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 15137 CCACCTCTCAATCTTAAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTT 15196 |||||||||||||| || || | |||||| || || || ||||| || ||||| || | Sbjct 1360591 CCACCTCTCAATCTCAATACAAGATGAAGCGTAGACTCCTTTTGAATATTGTAGTCTGAT 1360650 Query 15197 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGA 15256 | |||| | ||||||||||| || |||||| | ||||| | || ||||| |||| Sbjct 1360651 AACGTTCTTCCATCTTCTAATTGCTTACCAGCGAAAATCAATCTCTGCTGGTCTGGTGGA 1360710 Query 15257 ATTCCTTCTTTGTCACAAATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACA 15316 || || || ||||| ||| ||| ||| || | || || || || ||| || Sbjct 1360711 ATACCCTCCTTGTCCTGAATCTTGGACTTGACKTTGTCAATAGTGTCAGAGGATTCAACC 1360770 Query 15317 TCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATA 15364 || | |||||| ||||| || |||| || || ||||| ||||||||| Sbjct 1360771 TCAAGGGTAATAGTTTTTCCAGTCAAGGTCTTGACAAAGATTTGCATA 1360818 Score = 116 bits (128), Expect = 3e-21 Identities = 162/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 15137 CCACCTCTCAATCTTAAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTT 15196 |||||||||||||| || || | |||||| || || || || || || ||||| || | Sbjct 1360819 CCACCTCTCAATCTCAATACAAGATGAAGTGTAGACTCCTTCTGAATATTGTAGTCTGAT 1360878 Query 15197 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGA 15256 | |||| | ||||||||||| || |||||| | ||||| | || ||||| |||| Sbjct 1360879 AACGTTCTGCCATCTTCTAATTGCTTACCAGCGAAAATCAATCTCTGCTGGTCTGGTGGA 1360938 Query 15257 ATTCCTTCTTTGTCACAAATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACA 15316 || || || ||||| ||| ||| ||| || | || || || || ||| || Sbjct 1360939 ATACCCTCCTTGTCCTGAATCTTGGACTTGACRTTGTCAATAGTGTCAGAGGATTCAACC 1360998 Query 15317 TCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATA 15364 || | |||||| ||||| || |||| || || ||||| ||||||||| Sbjct 1360999 TCAAGGGTAATAGTTTTTCCAGTCAAGGTCTTGACAAAGATTTGCATA 1361046 Score = 116 bits (128), Expect = 3e-21 Identities = 162/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 15137 CCACCTCTCAATCTTAAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTT 15196 |||||||||||||| || || | |||||| || || || || || || ||||| || | Sbjct 1361047 CCACCTCTCAATCTCAATACAAGATGAAGTGTAGACTCCTTCTGAATATTGTAGTCTGAT 1361106 Query 15197 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGA 15256 | |||| | ||||||||||| || |||||| | ||||| | || ||||| |||| Sbjct 1361107 AACGTTCTGCCATCTTCTAATTGCTTACCAGCGAAAATCAATCTCTGCTGGTCTGGTGGA 1361166 Query 15257 ATTCCTTCTTTGTCACAAATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACA 15316 || || || ||||| ||| ||| ||| || | || || || || ||| || Sbjct 1361167 ATACCCTCCTTGTCCTGAATCTTGGACTTGACRTTGTCAATAGTGTCAGAGGATTCAACC 1361226 Query 15317 TCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATA 15364 || | |||||| ||||| || |||| || || ||||| ||||||||| Sbjct 1361227 TCAAGGGTAATAGTTTTTCCAGTCAAGGTCTTGACAAAGATTTGCATA 1361274 Score = 116 bits (128), Expect = 3e-21 Identities = 162/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 15137 CCACCTCTCAATCTTAAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTT 15196 |||||||||||||| || || | |||||| || || || || || || ||||| || | Sbjct 1361275 CCACCTCTCAATCTCAATACAAGATGAAGTGTAGACTCCTTCTGAATATTGTAGTCTGAT 1361334 Query 15197 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGA 15256 | |||| | ||||||||||| || |||||| | ||||| | || ||||| |||| Sbjct 1361335 AACGTTCTGCCATCTTCTAATTGCTTACCAGCGAAAATCAATCTCTGCTGGTCTGGTGGA 1361394 Query 15257 ATTCCTTCTTTGTCACAAATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACA 15316 || || || ||||| ||| ||| ||| || | || || || || ||| || Sbjct 1361395 ATACCCTCCTTGTCCTGAATCTTGGACTTGACGTTGTCAATAGTGTCAGAGGATTCAACC 1361454 Query 15317 TCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCAT 15363 || | |||||| ||||| || |||| || |||||||| |||||||| Sbjct 1361455 TCAAGGGTAATAGTTTTTCCAGTCAAGGTCTTTACAAAGATTTGCAT 1361501 >seq7 Length=860703 Score = 116 bits (128), Expect = 3e-21 Identities = 162/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 15137 CCACCTCTCAATCTTAAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTT 15196 |||||||||||||| || || || ||||| || || || ||||| |||||||| || Sbjct 37859 CCACCTCTCAATCTCAACACCAAGTGAAGAGTAGACTCCTTTTGGATGTTGTAGTCAGAA 37800 Query 15197 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGA 15256 ||| | | |||| || ||||| || ||||| | ||||| | ||| ||||| ||| Sbjct 37799 AGAGTACGGCCGTCCTCCAATTGCTTACCAGCAAAAATCAATCTTTGCTGGTCAGGGGGA 37740 Query 15257 ATTCCTTCTTTGTCACAAATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACA 15316 || ||||| ||||| ||| ||| ||| ||| | || ||||| ||| | || || Sbjct 37739 ATACCTTCCTTGTCCTGAATCTTGGACTTGACATTGTCAATGGTGTCGGAAGACTCCACC 37680 Query 15317 TCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCAT 15363 || | ||| || || ||||| || | || || || ||||||||||| Sbjct 37679 TCAAGGGTGATAGTCTTACCGGTTAAGGTCTTGACGAAAATTTGCAT 37633 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 362179111718820