Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Wickerhamia_20fluorescens_20[genbank_20GCA_5F001599155.1_202016-03- 01] 20 sequences; 13,178,500 total letters Query= NC_005179.1 Length=134721 Score E Sequences producing significant alignments: (Bits) Value seq1 212 5e-50 >seq1 Length=2974285 Score = 212 bits (234), Expect = 5e-50 Identities = 496/733 (68%), Gaps = 28/733 (4%) Strand=Plus/Minus Query 12860 TTTTGATATTCGCTAACTCTTTTTTCAAAAAAGTTTGTTTTTCCTTCTAACGAAATATTT 12919 ||||| || || |||||||| ||||| |||||||| || |||||| | |||||||| ||| Sbjct 233318 TTTTGGTAGTCACTAACTCTCTTTTCGAAAAAGTTGGTCTTTCCTGCCAACGAAATGTTT 233259 Query 12920 TCCATAAAATCGAAAGGATTTTTCGAACAATAGTA---TTTTTTACACCCTAATTCTAGT 12976 |||||||| || || ||||| | ||| || ||| |||| |||||| | | Sbjct 233258 TCCATAAAGTCAAAGGGATTAGT--AAC-ATTGTAAACCTTTTCGTTGCCTAATGCGACA 233202 Query 12977 AACAATCTGTCAGCAACAAACTCTATGTACTGTTTCATTAAATCACAGTTCATTCCTATT 13036 | |||||||| ||||||||||| | |||||| ||| || | ||||||||| || | Sbjct 233201 AGTAATCTGTCGGCAACAAACTCCACGTACTGGCACATCAATTTACAGTTCATACCCAAC 233142 Query 13037 AATTTTACAGGCATAGCTTCTGTTAAAAAGtttttttCTATATCAACTGCTTC---GATA 13093 || | ||||| ||| || || ||||| | ||||| ||| |||| || || |||| Sbjct 233141 AACGAAATAGGCAAAGCATCAGTGAAAAACTCCTTTTCAATAGCAACGGCCTCTGTGATA 233082 Query 13094 ACTATGTCTCTTATTACGTTCTC-TAATGGAG---GATTTGATAGATGCTTAAACATCAT 13149 | | | |||| || | | || | | | |||| || || || | || Sbjct 233081 A-TCT-TCTC----GACAATAGCAGCATCGGGTCTGTTTTGCAAG-TGGGAGAATAACAA 233029 Query 13150 ACATGCAAAATCACAGTGCAATCCTTCATCTCTACTTATTAGCTCGTTTGAAAATGTTAG 13209 || |||||||| |||||| || ||||| | | |||| |||||| || || || | Sbjct 233028 GCAAGCAAAATCGGTGTGCAAACCCTCATCACGGCAGATTAACTCGTTGGAGAAAGTCAA 232969 Query 13210 ACCCGGCATAAGCCCTCGTTTTTTAATCCAAAATATAGCAGCAAACGAAC--CCGaaaaa 13267 ||| ||||| | |||| || || | |||||| || | |||||||| | | ||| || Sbjct 232968 ACCAGGCATCAAGCCTCTCTTCTTCAACCAAAAGATGGATGCAAACGATCCACTGAAGAA 232909 Query 13268 aaTATTCCTTCAACTGCTGCAAACGCTATCAACCTTTCACC--ATACGTACTATTTTTAC 13325 |||| |||||||| || ||||| || | | | ||| || ||| | || | | | Sbjct 232908 AATA--CCTTCAACAGCAGCAAATGCAACAAGACGTTCGCCAAATAAGGCCTCGTCAT-C 232852 Query 13326 TCTCTATCCACTTTCTGGCCCAGTTTGCTTTTTGTTTAACGCAGTTCATATTTTCTATTG 13385 || ||||| | ||||||| || || | ||| | ||| ||| | || || | Sbjct 232851 ACT-GATCCAGCGTAAAGCCCAGTCAGCCTTCTTTTTGATGCAAGGAATAGTCTCAATAG 232793 Query 13386 CGTTAAATAAATAAtttttttCCTTACTGTCTAAAATATAAGTATCTATCAATAAGCTAT 13445 | || |||||| | | | ||||| ||| ||||| || || ||||| ||| | Sbjct 232792 CATTGAATAAAAAGTCTGCCTCCTTGGGGTCCTTGATATAGGTGTCGATCAACAAGGAGT 232733 Query 13446 ACATTTCTGAATGAATATTTTCCATCGCTATTTGGAAACCATAAAAACATCTAGCCTCTG 13505 | | ||||| || |||||||||||| ||||||||||| ||||| ||| | || |||| Sbjct 232732 AGGTCTCTGAGTGGATATTTTCCATCATGATTTGGAAACCGTAAAAGCATTTGGCTTCTG 232673 Query 13506 ATACCTGAACTTCGGAGTAAAATCTTTCTGCTAAGTTTTCGTTAACTATCCCGTCACTAG 13565 | |||||| |||| | || | || | ||||| |||||||| || || || || Sbjct 232672 GAATCTGAACCTCGGCAGAGAAGTTCTCCACCAAGTTCTCGTTAACAATACCATCGGAAG 232613 Query 13566 CAGCaaaaaaaGC 13578 |||| ||||| || Sbjct 232612 CAGCGAAAAATGC 232600 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 430982294948040