Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Wickerhamia_20fluorescens_20[genbank_20GCA_5F001599155.1_202016-03-
01] 20 sequences; 13,178,500 total letters
Query= NC_005179.1
Length=134721
Score E
Sequences producing significant alignments: (Bits) Value
seq1 212 5e-50
>seq1
Length=2974285
Score = 212 bits (234), Expect = 5e-50
Identities = 496/733 (68%), Gaps = 28/733 (4%)
Strand=Plus/Minus
Query 12860 TTTTGATATTCGCTAACTCTTTTTTCAAAAAAGTTTGTTTTTCCTTCTAACGAAATATTT 12919
||||| || || |||||||| ||||| |||||||| || |||||| | |||||||| |||
Sbjct 233318 TTTTGGTAGTCACTAACTCTCTTTTCGAAAAAGTTGGTCTTTCCTGCCAACGAAATGTTT 233259
Query 12920 TCCATAAAATCGAAAGGATTTTTCGAACAATAGTA---TTTTTTACACCCTAATTCTAGT 12976
|||||||| || || ||||| | ||| || ||| |||| |||||| | |
Sbjct 233258 TCCATAAAGTCAAAGGGATTAGT--AAC-ATTGTAAACCTTTTCGTTGCCTAATGCGACA 233202
Query 12977 AACAATCTGTCAGCAACAAACTCTATGTACTGTTTCATTAAATCACAGTTCATTCCTATT 13036
| |||||||| ||||||||||| | |||||| ||| || | ||||||||| || |
Sbjct 233201 AGTAATCTGTCGGCAACAAACTCCACGTACTGGCACATCAATTTACAGTTCATACCCAAC 233142
Query 13037 AATTTTACAGGCATAGCTTCTGTTAAAAAGtttttttCTATATCAACTGCTTC---GATA 13093
|| | ||||| ||| || || ||||| | ||||| ||| |||| || || ||||
Sbjct 233141 AACGAAATAGGCAAAGCATCAGTGAAAAACTCCTTTTCAATAGCAACGGCCTCTGTGATA 233082
Query 13094 ACTATGTCTCTTATTACGTTCTC-TAATGGAG---GATTTGATAGATGCTTAAACATCAT 13149
| | | |||| || | | || | | | |||| || || || | ||
Sbjct 233081 A-TCT-TCTC----GACAATAGCAGCATCGGGTCTGTTTTGCAAG-TGGGAGAATAACAA 233029
Query 13150 ACATGCAAAATCACAGTGCAATCCTTCATCTCTACTTATTAGCTCGTTTGAAAATGTTAG 13209
|| |||||||| |||||| || ||||| | | |||| |||||| || || || |
Sbjct 233028 GCAAGCAAAATCGGTGTGCAAACCCTCATCACGGCAGATTAACTCGTTGGAGAAAGTCAA 232969
Query 13210 ACCCGGCATAAGCCCTCGTTTTTTAATCCAAAATATAGCAGCAAACGAAC--CCGaaaaa 13267
||| ||||| | |||| || || | |||||| || | |||||||| | | ||| ||
Sbjct 232968 ACCAGGCATCAAGCCTCTCTTCTTCAACCAAAAGATGGATGCAAACGATCCACTGAAGAA 232909
Query 13268 aaTATTCCTTCAACTGCTGCAAACGCTATCAACCTTTCACC--ATACGTACTATTTTTAC 13325
|||| |||||||| || ||||| || | | | ||| || ||| | || | | |
Sbjct 232908 AATA--CCTTCAACAGCAGCAAATGCAACAAGACGTTCGCCAAATAAGGCCTCGTCAT-C 232852
Query 13326 TCTCTATCCACTTTCTGGCCCAGTTTGCTTTTTGTTTAACGCAGTTCATATTTTCTATTG 13385
|| ||||| | ||||||| || || | ||| | ||| ||| | || || |
Sbjct 232851 ACT-GATCCAGCGTAAAGCCCAGTCAGCCTTCTTTTTGATGCAAGGAATAGTCTCAATAG 232793
Query 13386 CGTTAAATAAATAAtttttttCCTTACTGTCTAAAATATAAGTATCTATCAATAAGCTAT 13445
| || |||||| | | | ||||| ||| ||||| || || ||||| ||| |
Sbjct 232792 CATTGAATAAAAAGTCTGCCTCCTTGGGGTCCTTGATATAGGTGTCGATCAACAAGGAGT 232733
Query 13446 ACATTTCTGAATGAATATTTTCCATCGCTATTTGGAAACCATAAAAACATCTAGCCTCTG 13505
| | ||||| || |||||||||||| ||||||||||| ||||| ||| | || ||||
Sbjct 232732 AGGTCTCTGAGTGGATATTTTCCATCATGATTTGGAAACCGTAAAAGCATTTGGCTTCTG 232673
Query 13506 ATACCTGAACTTCGGAGTAAAATCTTTCTGCTAAGTTTTCGTTAACTATCCCGTCACTAG 13565
| |||||| |||| | || | || | ||||| |||||||| || || || ||
Sbjct 232672 GAATCTGAACCTCGGCAGAGAAGTTCTCCACCAAGTTCTCGTTAACAATACCATCGGAAG 232613
Query 13566 CAGCaaaaaaaGC 13578
|||| ||||| ||
Sbjct 232612 CAGCGAAAAATGC 232600
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 430982294948040
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |