Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Wickerhamia_20fluorescens_20[genbank_20GCA_5F001599155.1_202016-03- 01] 20 sequences; 13,178,500 total letters Query= NC_005309.1 Length=359853 Score E Sequences producing significant alignments: (Bits) Value seq1 194 4e-44 seq7 125 2e-23 >seq1 Length=2974285 Score = 194 bits (214), Expect = 4e-44 Identities = 388/563 (69%), Gaps = 18/563 (3%) Strand=Plus/Plus Query 268742 ATGTACAAACAGGCCGTTGCTTCTTTTTGGACTGTAGAAGAAGTAGATCTGTCTTATGAC 268801 |||||||| | || | || ||||||||||||| ||| ||| | ||| || | ||| Sbjct 232480 ATGTACAAGAAAGCAGAAGCATCTTTTTGGACTGCAGAGGAAATCGATTTGGGAAAAGAC 232539 Query 268802 T-TAATAGATTGGAAAAATT--TAAAACCAGAA-GAAAGAAGATTTATATCTTATATTCT 268857 | || || ||||| ||| | ||| | || || | || || || |||| | Sbjct 232540 ACTCAT-GACTGGAACAATCGCTTGAACGACAACGAGCGTTTCTTCATTTCCCGTATTTT 232598 Query 268858 TGCGTTTTTTGCAGTTAGTGATGGTATCGTTAACGAAAATCTAGTAGAGAAGTTCTGTCA 268917 || ||||| || | | |||||||| |||||||| || | || ||||| |||| | Sbjct 232599 GGCATTTTTCGCTGCTTCCGATGGTATTGTTAACGAGAACTTGGTGGAGAACTTCTCTGC 232658 Query 268918 AGAGGTACAGATTCCTGAAGCCAGATGTTTTTACGGATTCCAGATAGCTATAGAAAATAT 268977 ||||| |||||||| ||||||| ||| |||||||| ||||| || || |||||||| Sbjct 232659 CGAGGTTCAGATTCCAGAAGCCAAATGCTTTTACGGTTTCCAAATCATGATGGAAAATAT 232718 Query 268978 TCATTCAGAGATGTACAGTCTATTAATAGATACTTATATAGATGATAACAACGAAAAGAA 269037 || ||||||| ||| | || || || || ||||| | || ||| || Sbjct 232719 CCACTCAGAGACCTACTCCTTGTTGATCGACACCTATATCAAGGACCCCAAGGAGGC--- 232775 Query 269038 AAGACTATTT--TC--TTCTAT-GAGAACTATGGACTGTGTGAGaaaaaaaTCTGAATGG 269092 ||||| ||| || | |||| |||| |||| || | | ||| || |||| ||| Sbjct 232776 -AGACTTTTTATTCAATGCTATTGAGA-CTATTCCTTGCATCAAAAAGAAGGCTGACTGG 232833 Query 269093 GCTCTGAAATGGATAAACGATAGCGCG-CCTTAC--GGAGAAAGGTTAGTTGCTTTTGCC 269149 ||| | ||||| | ||| || | ||||| || ||| | | ||||| ||||| Sbjct 232834 GCTTTACGCTGGATCAGTGATGACGAGGCCTTATTTGGCGAACGTCTTGTTGCATTTGCT 232893 Query 269150 GCTGTAGAAGGTATATTCTTTTCGGGGTCTTTTGCCGCTATCTTTTGGTTGAAGAAAAGA 269209 ||||| |||||||| ||||| || || ||||| | ||||||||||||||||| ||| Sbjct 232894 GCTGTTGAAGGTATTTTCTTCAGTGGATCGTTTGCATCCATCTTTTGGTTGAAGAAGAGA 232953 Query 269210 GGCCTTATGCCAGGATTAACTTTCTCTAACGAATTGATAAGCAGGGACGAAGGTTTACAC 269269 ||| | ||||| || || |||||||| ||||| || || || | || || ||||| ||| Sbjct 232954 GGCTTGATGCCTGGTTTGACTTTCTCCAACGAGTTAATCTGCCGTGATGAGGGTTTGCAC 233013 Query 269270 TGCGACTTCGCTTGTTTATTATT 269292 ||| || ||||| || ||||| Sbjct 233014 ACCGATTTTGCTTGCTTGTTATT 233036 Score = 152 bits (168), Expect = 1e-31 Identities = 176/237 (74%), Gaps = 0/237 (0%) Strand=Plus/Plus Query 104330 ATTCCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCA 104389 || || ||||| | || | ||| ||||| | |||||| || ||||||||||| ||||| Sbjct 1361272 ATACCACCTCTCAATCTCAATACAAGATGAAGTGTAGACTCCTTCTGAATATTGTAGTCT 1361331 Query 104390 GATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGA 104449 |||| ||||| || ||||||| ||| || ||||| ||||| | ||||| || || || Sbjct 1361332 GATAACGTTCTGCCATCTTCTAATTGCTTACCAGCGAAAATCAATCTCTGCTGGTCTGGT 1361391 Query 104450 GGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCT 104509 || || || || || ||||||||||| | || || || || | || || | ||| Sbjct 1361392 GGAATACCCTCCTTGTCCTGAATCTTGGACTTGACGTTGTCAATAGTGTCAGAGGATTCA 1361451 Query 104510 ACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCATTTTGTGT 104566 ||||| || |||||||| || ||||| | || |||||||| || |||||| ||||| Sbjct 1361452 ACCTCAAGGGTAATAGTTTTTCCAGTCAAGGTCTTTACAAAGATTTGCATTGTGTGT 1361508 Score = 141 bits (156), Expect = 2e-28 Identities = 169/230 (73%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 104330 ATTCCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCA 104389 || || ||||| | || | ||| ||||| | |||||| || ||||||||||| ||||| Sbjct 1360816 ATACCACCTCTCAATCTCAATACAAGATGAAGTGTAGACTCCTTCTGAATATTGTAGTCT 1360875 Query 104390 GATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGA 104449 |||| ||||| || ||||||| ||| || ||||| ||||| | ||||| || || || Sbjct 1360876 GATAACGTTCTGCCATCTTCTAATTGCTTACCAGCGAAAATCAATCTCTGCTGGTCTGGT 1360935 Query 104450 GGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCT 104509 || || || || || ||||||||||| | || || || || | || || | ||| Sbjct 1360936 GGAATACCCTCCTTGTCCTGAATCTTGGACTTGACRTTGTCAATAGTGTCAGAGGATTCA 1360995 Query 104510 ACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559 ||||| || |||||||| || ||||| | || || ||||| || ||||| Sbjct 1360996 ACCTCAAGGGTAATAGTTTTTCCAGTCAAGGTCTTGACAAAGATTTGCAT 1361045 Score = 141 bits (156), Expect = 2e-28 Identities = 169/230 (73%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 104330 ATTCCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCA 104389 || || ||||| | || | ||| ||||| | |||||| || ||||||||||| ||||| Sbjct 1361044 ATACCACCTCTCAATCTCAATACAAGATGAAGTGTAGACTCCTTCTGAATATTGTAGTCT 1361103 Query 104390 GATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGA 104449 |||| ||||| || ||||||| ||| || ||||| ||||| | ||||| || || || Sbjct 1361104 GATAACGTTCTGCCATCTTCTAATTGCTTACCAGCGAAAATCAATCTCTGCTGGTCTGGT 1361163 Query 104450 GGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCT 104509 || || || || || ||||||||||| | || || || || | || || | ||| Sbjct 1361164 GGAATACCCTCCTTGTCCTGAATCTTGGACTTGACRTTGTCAATAGTGTCAGAGGATTCA 1361223 Query 104510 ACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559 ||||| || |||||||| || ||||| | || || ||||| || ||||| Sbjct 1361224 ACCTCAAGGGTAATAGTTTTTCCAGTCAAGGTCTTGACAAAGATTTGCAT 1361273 Score = 131 bits (144), Expect = 4e-25 Identities = 167/230 (73%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 104330 ATTCCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCA 104389 || || ||||| | || | ||| ||||| | ||||| || || |||||||| ||||| Sbjct 1360588 ATACCACCTCTCAATCTCAATACAAGATGAAGCGTAGACTCCTTTTGAATATTGTAGTCT 1360647 Query 104390 GATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGA 104449 |||| ||||| || ||||||| ||| || ||||| ||||| | ||||| || || || Sbjct 1360648 GATAACGTTCTTCCATCTTCTAATTGCTTACCAGCGAAAATCAATCTCTGCTGGTCTGGT 1360707 Query 104450 GGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCT 104509 || || || || || ||||||||||| | || || || || | || || | ||| Sbjct 1360708 GGAATACCCTCCTTGTCCTGAATCTTGGACTTGACKTTGTCAATAGTGTCAGAGGATTCA 1360767 Query 104510 ACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559 ||||| || |||||||| || ||||| | || || ||||| || ||||| Sbjct 1360768 ACCTCAAGGGTAATAGTTTTTCCAGTCAAGGTCTTGACAAAGATTTGCAT 1360817 >seq7 Length=860703 Score = 125 bits (138), Expect = 2e-23 Identities = 146/197 (74%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 104363 GTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCA 104422 ||||| || || || || || |||||||| ||||| | ||||| || | ||| || ||| Sbjct 37829 GTAGACTCCTTTTGGATGTTGTAGTCAGAAAGAGTACGGCCGTCCTCCAATTGCTTACCA 37770 Query 104423 GCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTT 104482 |||||||| | || || || ||||| || || ||||| || ||||||||||| | || Sbjct 37769 GCAAAAATCAATCTTTGCTGGTCAGGGGGAATACCTTCCTTGTCCTGAATCTTGGACTTG 37710 Query 104483 ACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTT 104542 ||||| || | ||| ||| || || ||||| || || ||||||||||| || | || Sbjct 37709 ACATTGTCAATGGTGTCGGAAGACTCCACCTCAAGGGTGATAGTCTTACCGGTTAAGGTC 37650 Query 104543 TTTACAAATATCTGCAT 104559 || || || || ||||| Sbjct 37649 TTGACGAAAATTTGCAT 37633 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1151398104954160