Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Wickerhamia_20fluorescens_20[genbank_20GCA_5F001599155.1_202016-03-
01] 20 sequences; 13,178,500 total letters
Query= NC_005309.1
Length=359853
Score E
Sequences producing significant alignments: (Bits) Value
seq1 194 4e-44
seq7 125 2e-23
>seq1
Length=2974285
Score = 194 bits (214), Expect = 4e-44
Identities = 388/563 (69%), Gaps = 18/563 (3%)
Strand=Plus/Plus
Query 268742 ATGTACAAACAGGCCGTTGCTTCTTTTTGGACTGTAGAAGAAGTAGATCTGTCTTATGAC 268801
|||||||| | || | || ||||||||||||| ||| ||| | ||| || | |||
Sbjct 232480 ATGTACAAGAAAGCAGAAGCATCTTTTTGGACTGCAGAGGAAATCGATTTGGGAAAAGAC 232539
Query 268802 T-TAATAGATTGGAAAAATT--TAAAACCAGAA-GAAAGAAGATTTATATCTTATATTCT 268857
| || || ||||| ||| | ||| | || || | || || || |||| |
Sbjct 232540 ACTCAT-GACTGGAACAATCGCTTGAACGACAACGAGCGTTTCTTCATTTCCCGTATTTT 232598
Query 268858 TGCGTTTTTTGCAGTTAGTGATGGTATCGTTAACGAAAATCTAGTAGAGAAGTTCTGTCA 268917
|| ||||| || | | |||||||| |||||||| || | || ||||| |||| |
Sbjct 232599 GGCATTTTTCGCTGCTTCCGATGGTATTGTTAACGAGAACTTGGTGGAGAACTTCTCTGC 232658
Query 268918 AGAGGTACAGATTCCTGAAGCCAGATGTTTTTACGGATTCCAGATAGCTATAGAAAATAT 268977
||||| |||||||| ||||||| ||| |||||||| ||||| || || ||||||||
Sbjct 232659 CGAGGTTCAGATTCCAGAAGCCAAATGCTTTTACGGTTTCCAAATCATGATGGAAAATAT 232718
Query 268978 TCATTCAGAGATGTACAGTCTATTAATAGATACTTATATAGATGATAACAACGAAAAGAA 269037
|| ||||||| ||| | || || || || ||||| | || ||| ||
Sbjct 232719 CCACTCAGAGACCTACTCCTTGTTGATCGACACCTATATCAAGGACCCCAAGGAGGC--- 232775
Query 269038 AAGACTATTT--TC--TTCTAT-GAGAACTATGGACTGTGTGAGaaaaaaaTCTGAATGG 269092
||||| ||| || | |||| |||| |||| || | | ||| || |||| |||
Sbjct 232776 -AGACTTTTTATTCAATGCTATTGAGA-CTATTCCTTGCATCAAAAAGAAGGCTGACTGG 232833
Query 269093 GCTCTGAAATGGATAAACGATAGCGCG-CCTTAC--GGAGAAAGGTTAGTTGCTTTTGCC 269149
||| | ||||| | ||| || | ||||| || ||| | | ||||| |||||
Sbjct 232834 GCTTTACGCTGGATCAGTGATGACGAGGCCTTATTTGGCGAACGTCTTGTTGCATTTGCT 232893
Query 269150 GCTGTAGAAGGTATATTCTTTTCGGGGTCTTTTGCCGCTATCTTTTGGTTGAAGAAAAGA 269209
||||| |||||||| ||||| || || ||||| | ||||||||||||||||| |||
Sbjct 232894 GCTGTTGAAGGTATTTTCTTCAGTGGATCGTTTGCATCCATCTTTTGGTTGAAGAAGAGA 232953
Query 269210 GGCCTTATGCCAGGATTAACTTTCTCTAACGAATTGATAAGCAGGGACGAAGGTTTACAC 269269
||| | ||||| || || |||||||| ||||| || || || | || || ||||| |||
Sbjct 232954 GGCTTGATGCCTGGTTTGACTTTCTCCAACGAGTTAATCTGCCGTGATGAGGGTTTGCAC 233013
Query 269270 TGCGACTTCGCTTGTTTATTATT 269292
||| || ||||| || |||||
Sbjct 233014 ACCGATTTTGCTTGCTTGTTATT 233036
Score = 152 bits (168), Expect = 1e-31
Identities = 176/237 (74%), Gaps = 0/237 (0%)
Strand=Plus/Plus
Query 104330 ATTCCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCA 104389
|| || ||||| | || | ||| ||||| | |||||| || ||||||||||| |||||
Sbjct 1361272 ATACCACCTCTCAATCTCAATACAAGATGAAGTGTAGACTCCTTCTGAATATTGTAGTCT 1361331
Query 104390 GATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGA 104449
|||| ||||| || ||||||| ||| || ||||| ||||| | ||||| || || ||
Sbjct 1361332 GATAACGTTCTGCCATCTTCTAATTGCTTACCAGCGAAAATCAATCTCTGCTGGTCTGGT 1361391
Query 104450 GGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCT 104509
|| || || || || ||||||||||| | || || || || | || || | |||
Sbjct 1361392 GGAATACCCTCCTTGTCCTGAATCTTGGACTTGACGTTGTCAATAGTGTCAGAGGATTCA 1361451
Query 104510 ACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCATTTTGTGT 104566
||||| || |||||||| || ||||| | || |||||||| || |||||| |||||
Sbjct 1361452 ACCTCAAGGGTAATAGTTTTTCCAGTCAAGGTCTTTACAAAGATTTGCATTGTGTGT 1361508
Score = 141 bits (156), Expect = 2e-28
Identities = 169/230 (73%), Gaps = 0/230 (0%)
Strand=Plus/Plus
Query 104330 ATTCCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCA 104389
|| || ||||| | || | ||| ||||| | |||||| || ||||||||||| |||||
Sbjct 1360816 ATACCACCTCTCAATCTCAATACAAGATGAAGTGTAGACTCCTTCTGAATATTGTAGTCT 1360875
Query 104390 GATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGA 104449
|||| ||||| || ||||||| ||| || ||||| ||||| | ||||| || || ||
Sbjct 1360876 GATAACGTTCTGCCATCTTCTAATTGCTTACCAGCGAAAATCAATCTCTGCTGGTCTGGT 1360935
Query 104450 GGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCT 104509
|| || || || || ||||||||||| | || || || || | || || | |||
Sbjct 1360936 GGAATACCCTCCTTGTCCTGAATCTTGGACTTGACRTTGTCAATAGTGTCAGAGGATTCA 1360995
Query 104510 ACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559
||||| || |||||||| || ||||| | || || ||||| || |||||
Sbjct 1360996 ACCTCAAGGGTAATAGTTTTTCCAGTCAAGGTCTTGACAAAGATTTGCAT 1361045
Score = 141 bits (156), Expect = 2e-28
Identities = 169/230 (73%), Gaps = 0/230 (0%)
Strand=Plus/Plus
Query 104330 ATTCCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCA 104389
|| || ||||| | || | ||| ||||| | |||||| || ||||||||||| |||||
Sbjct 1361044 ATACCACCTCTCAATCTCAATACAAGATGAAGTGTAGACTCCTTCTGAATATTGTAGTCT 1361103
Query 104390 GATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGA 104449
|||| ||||| || ||||||| ||| || ||||| ||||| | ||||| || || ||
Sbjct 1361104 GATAACGTTCTGCCATCTTCTAATTGCTTACCAGCGAAAATCAATCTCTGCTGGTCTGGT 1361163
Query 104450 GGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCT 104509
|| || || || || ||||||||||| | || || || || | || || | |||
Sbjct 1361164 GGAATACCCTCCTTGTCCTGAATCTTGGACTTGACRTTGTCAATAGTGTCAGAGGATTCA 1361223
Query 104510 ACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559
||||| || |||||||| || ||||| | || || ||||| || |||||
Sbjct 1361224 ACCTCAAGGGTAATAGTTTTTCCAGTCAAGGTCTTGACAAAGATTTGCAT 1361273
Score = 131 bits (144), Expect = 4e-25
Identities = 167/230 (73%), Gaps = 0/230 (0%)
Strand=Plus/Plus
Query 104330 ATTCCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCA 104389
|| || ||||| | || | ||| ||||| | ||||| || || |||||||| |||||
Sbjct 1360588 ATACCACCTCTCAATCTCAATACAAGATGAAGCGTAGACTCCTTTTGAATATTGTAGTCT 1360647
Query 104390 GATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGA 104449
|||| ||||| || ||||||| ||| || ||||| ||||| | ||||| || || ||
Sbjct 1360648 GATAACGTTCTTCCATCTTCTAATTGCTTACCAGCGAAAATCAATCTCTGCTGGTCTGGT 1360707
Query 104450 GGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCT 104509
|| || || || || ||||||||||| | || || || || | || || | |||
Sbjct 1360708 GGAATACCCTCCTTGTCCTGAATCTTGGACTTGACKTTGTCAATAGTGTCAGAGGATTCA 1360767
Query 104510 ACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559
||||| || |||||||| || ||||| | || || ||||| || |||||
Sbjct 1360768 ACCTCAAGGGTAATAGTTTTTCCAGTCAAGGTCTTGACAAAGATTTGCAT 1360817
>seq7
Length=860703
Score = 125 bits (138), Expect = 2e-23
Identities = 146/197 (74%), Gaps = 0/197 (0%)
Strand=Plus/Minus
Query 104363 GTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCA 104422
||||| || || || || || |||||||| ||||| | ||||| || | ||| || |||
Sbjct 37829 GTAGACTCCTTTTGGATGTTGTAGTCAGAAAGAGTACGGCCGTCCTCCAATTGCTTACCA 37770
Query 104423 GCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTT 104482
|||||||| | || || || ||||| || || ||||| || ||||||||||| | ||
Sbjct 37769 GCAAAAATCAATCTTTGCTGGTCAGGGGGAATACCTTCCTTGTCCTGAATCTTGGACTTG 37710
Query 104483 ACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTT 104542
||||| || | ||| ||| || || ||||| || || ||||||||||| || | ||
Sbjct 37709 ACATTGTCAATGGTGTCGGAAGACTCCACCTCAAGGGTGATAGTCTTACCGGTTAAGGTC 37650
Query 104543 TTTACAAATATCTGCAT 104559
|| || || || |||||
Sbjct 37649 TTGACGAAAATTTGCAT 37633
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1151398104954160
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |