Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Wickerhamia_20fluorescens_20[genbank_20GCA_5F001599155.1_202016-03- 01] 20 sequences; 13,178,500 total letters Query= NC_005902.1 Length=186250 Score E Sequences producing significant alignments: (Bits) Value seq6 113 5e-20 seq4 104 3e-17 >seq6 Length=1507273 Score = 113 bits (124), Expect = 5e-20 Identities = 290/442 (66%), Gaps = 20/442 (5%) Strand=Plus/Plus Query 6810 TTGTTCTTTTATAGCTTTTATATGATCTAAATAAATATGAGCATCTCCTAGCGTATGAAT 6869 |||||| | | || | |||||| || ||||||| ||| || || |||| || ||||| Sbjct 986939 TTGTTCCTCCAATGCATCTATATGGTCCAAATAAACATGCGCGTCACCTAAGGTGTGAAT 986998 Query 6870 AAATTCACCTGGTTTCATATCAACAGCTTGAGCAATTAAATATGTTAATAATGCATAAGA 6929 ||||||||| | |||||| || || ||||| | | ||| | || || || || Sbjct 986999 AAATTCACCACAATCCATATCCACTATATGGGCAATCATTTTTGTGAGCAACGCGTATGA 987058 Query 6930 AGCTACATTAAAAGGTACACCTAATCCCATATCTGCTGAT-CTTTGATAACATTGACAAG 6988 || | |||||| || ||||| ||||||||||| || | | || || || ||| | Sbjct 987059 TGCAATATTAAATGGAACACCCAATCCCATATC-GCAACTGCGCTGGTACAATAAACACG 987117 Query 6989 ATAAAATA--------------TTGTCTATAG----CATAAAATTGACACAATACATGAC 7030 ||| || || | | || ||||||| || || || ||||| | Sbjct 987118 ATAGCTTAGGTTTAGACGGGGATTCTGGAAAGTTAACATAAAACTGGCAGAAAACATGGC 987177 Query 7031 ATGGAGGTAAAACAGCCTGATCTATATCAGATGGATTCCAAGCAGTCATTAAAATACGTC 7090 ||||||||||| | | | | ||| | || |||||||| | ||| | ||| | || Sbjct 987178 ATGGAGGTAAAGCCATTTTACTGAAATCTGCAGGGTTCCAAGCCGACATGATAATTCTTC 987237 Query 7091 TATCATTTGGATTTGTTTTTAATTTTGTTATAATTATTTGTAATTGATCTATACCCTGAC 7150 ||| | ||| || |||| | || |||||| |||| ||||||| ||||| | Sbjct 987238 GATCGTATGGGTTATTTTTGAGCTTGTTTATAACATCCTGTAGCTGATCTACACCCTTCC 987297 Query 7151 CTTCATAATTAGTATGACAATTTATATAATTAGCTCCAAAATGTCTCCATTGAAACCCAT 7210 | || | || | ||| | | | || | ||||||||||| | |||||||||||||| Sbjct 987298 CAGTGTAGTCTGTGTCACAGTCTTTGTATTCGGCTCCAAAATGGCGCCATTGAAACCCAT 987357 Query 7211 AAATAGGACCTAAATCACCTTC 7232 ||| || || || || || || Sbjct 987358 AAACGGGTCCCAAGTCGCCCTC 987379 >seq4 Length=1642203 Score = 104 bits (114), Expect = 3e-17 Identities = 322/487 (66%), Gaps = 25/487 (5%) Strand=Plus/Minus Query 164500 TTAGGCTGTAAACATATAAAAGGAATTTTATTACATGGACCTCCTGGTTGCGGTAAAACA 164559 |||| || |||||| || || | |||||| |||| || |||||| ||||| ||| Sbjct 456035 TTAGACTACAAACATTGTAAGGGTTTATTATTATATGGCCCACCTGGTACTGGTAAGACA 455976 Query 164560 TTAATGGCTCGATGCATTGCTCAAGCTTTTAAATCGC---GACCCGTTAAAATTGTTAAT 164616 ||||| || || | ||| || | || ||| | || || || ||||| ||| Sbjct 455975 TTAATAGCCCG-TAAGTTGAGTAAAATGTTGAATGGAAAAGAACCC--AAGATTGTGAAT 455919 Query 164617 GGTCCTGAATTATTGAACAAATATGTAGGTGAGTCAGAAGCTAATGTTAGAAAGTTGTTT 164676 ||||| || | |||| ||||| ||| |||| ||||||| ||| || | || ||||| Sbjct 455918 GGTCCAGAGATGTTGAGCAAATTTGTGGGTGCTTCAGAAGAAAATATTCGTAATTTGTTC 455859 Query 164677 CAGGAGGCTGA--AGAAGAACAAAAGAAAGCAGGTTTAGCTAGTAAATTACATGTTATTG 164734 |||| || || || || |||| |||| | | || | || || |||||| Sbjct 455858 AAGGAAGCCGAGCAGGAGTACAAGCAAAAGGGAGACGA-CTCTGATCTT-CACGTTATTA 455801 Query 164735 TTTTTGATGAGATAGATGCTCTTTGCAAAAAACGTGGT---GATAA-TATTATT---CAT 164787 |||||||||| ||||| || | | ||| || | || | ||| | | || | Sbjct 455800 TTTTTGATGAATTAGATTCTGTATTCAAGCAAAGAGGGTCCGGTAAGTCTGATGGGACTG 455741 Query 164788 GA--TG----CA--GTGGTTAATCAGTTGCTTTCTAAAATAGATGGTGTAGAATCCTTAA 164839 || || || ||||||||||||||| | || || || |||||||| || | | Sbjct 455740 GAGTTGGCGACAATGTGGTTAATCAGTTGTTGTCCAAGATGGATGGTGTTGACCAGCTCA 455681 Query 164840 ATAATATTTTAATTGTAGGTATGACCAACCGACCTGATTTAATTGATGATGCTTTATTAC 164899 ||||| |||||||| | |||||||| || || || || || ||| ||| ||||||| Sbjct 455680 ATAATGTTTTAATTATTGGTATGACTAATAGATTAGACTTGATCGATTCTGCGTTATTAC 455621 Query 164900 GACCTGGTCGATTAGAATTGAAAATAGAAATAGGATTACCCGACAAAGAAGGACGCCTTC 164959 | || ||| |||| || | | || ||||| | | || || || |||| || | | Sbjct 455620 GTCCAGGTAGATTTGAGATTCAGATTGAAATTGCCCTCCCAGATGAAAAAGGTCGTCGTG 455561 Query 164960 AAATTTT 164966 | ||||| Sbjct 455560 ACATTTT 455554 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 595871851032000