Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Wickerhamia_20fluorescens_20[genbank_20GCA_5F001599155.1_202016-03-
01] 20 sequences; 13,178,500 total letters
Query= NC_005902.1
Length=186250
Score E
Sequences producing significant alignments: (Bits) Value
seq6 113 5e-20
seq4 104 3e-17
>seq6
Length=1507273
Score = 113 bits (124), Expect = 5e-20
Identities = 290/442 (66%), Gaps = 20/442 (5%)
Strand=Plus/Plus
Query 6810 TTGTTCTTTTATAGCTTTTATATGATCTAAATAAATATGAGCATCTCCTAGCGTATGAAT 6869
|||||| | | || | |||||| || ||||||| ||| || || |||| || |||||
Sbjct 986939 TTGTTCCTCCAATGCATCTATATGGTCCAAATAAACATGCGCGTCACCTAAGGTGTGAAT 986998
Query 6870 AAATTCACCTGGTTTCATATCAACAGCTTGAGCAATTAAATATGTTAATAATGCATAAGA 6929
||||||||| | |||||| || || ||||| | | ||| | || || || ||
Sbjct 986999 AAATTCACCACAATCCATATCCACTATATGGGCAATCATTTTTGTGAGCAACGCGTATGA 987058
Query 6930 AGCTACATTAAAAGGTACACCTAATCCCATATCTGCTGAT-CTTTGATAACATTGACAAG 6988
|| | |||||| || ||||| ||||||||||| || | | || || || ||| |
Sbjct 987059 TGCAATATTAAATGGAACACCCAATCCCATATC-GCAACTGCGCTGGTACAATAAACACG 987117
Query 6989 ATAAAATA--------------TTGTCTATAG----CATAAAATTGACACAATACATGAC 7030
||| || || | | || ||||||| || || || ||||| |
Sbjct 987118 ATAGCTTAGGTTTAGACGGGGATTCTGGAAAGTTAACATAAAACTGGCAGAAAACATGGC 987177
Query 7031 ATGGAGGTAAAACAGCCTGATCTATATCAGATGGATTCCAAGCAGTCATTAAAATACGTC 7090
||||||||||| | | | | ||| | || |||||||| | ||| | ||| | ||
Sbjct 987178 ATGGAGGTAAAGCCATTTTACTGAAATCTGCAGGGTTCCAAGCCGACATGATAATTCTTC 987237
Query 7091 TATCATTTGGATTTGTTTTTAATTTTGTTATAATTATTTGTAATTGATCTATACCCTGAC 7150
||| | ||| || |||| | || |||||| |||| ||||||| ||||| |
Sbjct 987238 GATCGTATGGGTTATTTTTGAGCTTGTTTATAACATCCTGTAGCTGATCTACACCCTTCC 987297
Query 7151 CTTCATAATTAGTATGACAATTTATATAATTAGCTCCAAAATGTCTCCATTGAAACCCAT 7210
| || | || | ||| | | | || | ||||||||||| | ||||||||||||||
Sbjct 987298 CAGTGTAGTCTGTGTCACAGTCTTTGTATTCGGCTCCAAAATGGCGCCATTGAAACCCAT 987357
Query 7211 AAATAGGACCTAAATCACCTTC 7232
||| || || || || || ||
Sbjct 987358 AAACGGGTCCCAAGTCGCCCTC 987379
>seq4
Length=1642203
Score = 104 bits (114), Expect = 3e-17
Identities = 322/487 (66%), Gaps = 25/487 (5%)
Strand=Plus/Minus
Query 164500 TTAGGCTGTAAACATATAAAAGGAATTTTATTACATGGACCTCCTGGTTGCGGTAAAACA 164559
|||| || |||||| || || | |||||| |||| || |||||| ||||| |||
Sbjct 456035 TTAGACTACAAACATTGTAAGGGTTTATTATTATATGGCCCACCTGGTACTGGTAAGACA 455976
Query 164560 TTAATGGCTCGATGCATTGCTCAAGCTTTTAAATCGC---GACCCGTTAAAATTGTTAAT 164616
||||| || || | ||| || | || ||| | || || || ||||| |||
Sbjct 455975 TTAATAGCCCG-TAAGTTGAGTAAAATGTTGAATGGAAAAGAACCC--AAGATTGTGAAT 455919
Query 164617 GGTCCTGAATTATTGAACAAATATGTAGGTGAGTCAGAAGCTAATGTTAGAAAGTTGTTT 164676
||||| || | |||| ||||| ||| |||| ||||||| ||| || | || |||||
Sbjct 455918 GGTCCAGAGATGTTGAGCAAATTTGTGGGTGCTTCAGAAGAAAATATTCGTAATTTGTTC 455859
Query 164677 CAGGAGGCTGA--AGAAGAACAAAAGAAAGCAGGTTTAGCTAGTAAATTACATGTTATTG 164734
|||| || || || || |||| |||| | | || | || || ||||||
Sbjct 455858 AAGGAAGCCGAGCAGGAGTACAAGCAAAAGGGAGACGA-CTCTGATCTT-CACGTTATTA 455801
Query 164735 TTTTTGATGAGATAGATGCTCTTTGCAAAAAACGTGGT---GATAA-TATTATT---CAT 164787
|||||||||| ||||| || | | ||| || | || | ||| | | || |
Sbjct 455800 TTTTTGATGAATTAGATTCTGTATTCAAGCAAAGAGGGTCCGGTAAGTCTGATGGGACTG 455741
Query 164788 GA--TG----CA--GTGGTTAATCAGTTGCTTTCTAAAATAGATGGTGTAGAATCCTTAA 164839
|| || || ||||||||||||||| | || || || |||||||| || | |
Sbjct 455740 GAGTTGGCGACAATGTGGTTAATCAGTTGTTGTCCAAGATGGATGGTGTTGACCAGCTCA 455681
Query 164840 ATAATATTTTAATTGTAGGTATGACCAACCGACCTGATTTAATTGATGATGCTTTATTAC 164899
||||| |||||||| | |||||||| || || || || || ||| ||| |||||||
Sbjct 455680 ATAATGTTTTAATTATTGGTATGACTAATAGATTAGACTTGATCGATTCTGCGTTATTAC 455621
Query 164900 GACCTGGTCGATTAGAATTGAAAATAGAAATAGGATTACCCGACAAAGAAGGACGCCTTC 164959
| || ||| |||| || | | || ||||| | | || || || |||| || | |
Sbjct 455620 GTCCAGGTAGATTTGAGATTCAGATTGAAATTGCCCTCCCAGATGAAAAAGGTCGTCGTG 455561
Query 164960 AAATTTT 164966
| |||||
Sbjct 455560 ACATTTT 455554
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 595871851032000
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |