Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Wickerhamia_20fluorescens_20[genbank_20GCA_5F001599155.1_202016-03-
01] 20 sequences; 13,178,500 total letters
Query= NC_006549.1
Length=140131
Score E
Sequences producing significant alignments: (Bits) Value
seq7 114 1e-20
seq1 109 5e-19
>seq7
Length=860703
Score = 114 bits (126), Expect = 1e-20
Identities = 162/228 (71%), Gaps = 0/228 (0%)
Strand=Plus/Minus
Query 94781 CCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTC 94840
|| |||||||||| |||||||||||| | |||||| |||||||| | ||| || ||
Sbjct 37859 CCACCTCTCAATCTCAACACCAAGTGAAGAGTAGACTCCTTTTGGATGTTGTAGTCAGAA 37800
Query 94841 ATAGTGTTGGAATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGA 94900
| ||| | ||||||| || || || |||| || ||||||||||| || || |||
Sbjct 37799 AGAGTACGGCCGTCCTCCAATTGCTTACCAGCAAAAATCAATCTTTGCTGGTCAGGGGGA 37740
Query 94901 ATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACG 94960
|||||||| ||||| | ||| || | |||||| | | | ||||| | || ||
Sbjct 37739 ATACCTTCCTTGTCCTGAATCTTGGACTTGACATTGTCAATGGTGTCGGAAGACTCCACC 37680
Query 94961 TCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCATG 95008
|||| ||||| || || || || | || || || || || ||||||
Sbjct 37679 TCAAGGGTGATAGTCTTACCGGTTAAGGTCTTGACGAAAATTTGCATG 37632
>seq1
Length=2974285
Score = 109 bits (120), Expect = 5e-19
Identities = 172/245 (70%), Gaps = 4/245 (2%)
Strand=Plus/Plus
Query 94765 TTTAAAATTTTACACTCCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTG 94824
|||| || ||||| || |||||||||| ||| || | || | ||||| ||||||||
Sbjct 1360575 TTTAGCATCTTACATACCACCTCTCAATCTCAATACAAGATGAAGCGTAGACTCCTTTTG 1360634
Query 94825 CACGTTATAATCGCTCATAGTGTTGGA--ATCCTCCAGCTGTTTTCCGCCAAAGATTAAT 94882
| || || || | ||| ||| ||| || | || || || | || || |||
Sbjct 1360635 AATATTGTAGTC--TGATAACGTTCTTCCATCTTCTAATTGCTTACCAGCGAAAATCAAT 1360692
Query 94883 CTTTGCTGATCTGGAGGAATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACA 94942
|| ||||| ||||| |||||||| || ||||| | ||| || | |||||| | | | |
Sbjct 1360693 CTCTGCTGGTCTGGTGGAATACCCTCCTTGTCCTGAATCTTGGACTTGACKTTGTCAATA 1360752
Query 94943 GTGTCAGCGTGGTCGACGTCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATC 95002
||||||| | || || |||| || || ||||||||||| | || || ||||||||
Sbjct 1360753 GTGTCAGAGGATTCAACCTCAAGGGTAATAGTTTTTCCAGTCAAGGTCTTGACAAAGATT 1360812
Query 95003 TGCAT 95007
|||||
Sbjct 1360813 TGCAT 1360817
Score = 107 bits (118), Expect = 2e-18
Identities = 167/237 (70%), Gaps = 4/237 (2%)
Strand=Plus/Plus
Query 94773 TTTACACTCCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTAT 94832
||| || || |||||||||| ||| || | || | ||||| ||||| || | || |
Sbjct 1361267 TTTGCATACCACCTCTCAATCTCAATACAAGATGAAGTGTAGACTCCTTCTGAATATTGT 1361326
Query 94833 AATCGCTCATAGTGTT--GGAATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTG 94890
| || | ||| ||| | ||| || | || || || | || || ||||| |||||
Sbjct 1361327 AGTC--TGATAACGTTCTGCCATCTTCTAATTGCTTACCAGCGAAAATCAATCTCTGCTG 1361384
Query 94891 ATCTGGAGGAATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGC 94950
||||| |||||||| || ||||| | ||| || | ||||||| | | | ||||||||
Sbjct 1361385 GTCTGGTGGAATACCCTCCTTGTCCTGAATCTTGGACTTGACGTTGTCAATAGTGTCAGA 1361444
Query 94951 GTGGTCGACGTCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007
| || || |||| || || ||||||||||| | || || |||||||| |||||
Sbjct 1361445 GGATTCAACCTCAAGGGTAATAGTTTTTCCAGTCAAGGTCTTTACAAAGATTTGCAT 1361501
Score = 104 bits (114), Expect = 2e-17
Identities = 166/237 (70%), Gaps = 4/237 (2%)
Strand=Plus/Plus
Query 94773 TTTACACTCCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTAT 94832
||| || || |||||||||| ||| || | || | ||||| ||||| || | || |
Sbjct 1360811 TTTGCATACCACCTCTCAATCTCAATACAAGATGAAGTGTAGACTCCTTCTGAATATTGT 1360870
Query 94833 AATCGCTCATAGTGTT--GGAATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTG 94890
| || | ||| ||| | ||| || | || || || | || || ||||| |||||
Sbjct 1360871 AGTC--TGATAACGTTCTGCCATCTTCTAATTGCTTACCAGCGAAAATCAATCTCTGCTG 1360928
Query 94891 ATCTGGAGGAATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGC 94950
||||| |||||||| || ||||| | ||| || | |||||| | | | ||||||||
Sbjct 1360929 GTCTGGTGGAATACCCTCCTTGTCCTGAATCTTGGACTTGACRTTGTCAATAGTGTCAGA 1360988
Query 94951 GTGGTCGACGTCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007
| || || |||| || || ||||||||||| | || || |||||||| |||||
Sbjct 1360989 GGATTCAACCTCAAGGGTAATAGTTTTTCCAGTCAAGGTCTTGACAAAGATTTGCAT 1361045
Score = 104 bits (114), Expect = 2e-17
Identities = 166/237 (70%), Gaps = 4/237 (2%)
Strand=Plus/Plus
Query 94773 TTTACACTCCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTAT 94832
||| || || |||||||||| ||| || | || | ||||| ||||| || | || |
Sbjct 1361039 TTTGCATACCACCTCTCAATCTCAATACAAGATGAAGTGTAGACTCCTTCTGAATATTGT 1361098
Query 94833 AATCGCTCATAGTGTT--GGAATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTG 94890
| || | ||| ||| | ||| || | || || || | || || ||||| |||||
Sbjct 1361099 AGTC--TGATAACGTTCTGCCATCTTCTAATTGCTTACCAGCGAAAATCAATCTCTGCTG 1361156
Query 94891 ATCTGGAGGAATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGC 94950
||||| |||||||| || ||||| | ||| || | |||||| | | | ||||||||
Sbjct 1361157 GTCTGGTGGAATACCCTCCTTGTCCTGAATCTTGGACTTGACRTTGTCAATAGTGTCAGA 1361216
Query 94951 GTGGTCGACGTCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007
| || || |||| || || ||||||||||| | || || |||||||| |||||
Sbjct 1361217 GGATTCAACCTCAAGGGTAATAGTTTTTCCAGTCAAGGTCTTGACAAAGATTTGCAT 1361273
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 448291087927200
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |