Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Wickerhamia_20fluorescens_20[genbank_20GCA_5F001599155.1_202016-03- 01] 20 sequences; 13,178,500 total letters Query= NC_006549.1 Length=140131 Score E Sequences producing significant alignments: (Bits) Value seq7 114 1e-20 seq1 109 5e-19 >seq7 Length=860703 Score = 114 bits (126), Expect = 1e-20 Identities = 162/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 94781 CCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTC 94840 || |||||||||| |||||||||||| | |||||| |||||||| | ||| || || Sbjct 37859 CCACCTCTCAATCTCAACACCAAGTGAAGAGTAGACTCCTTTTGGATGTTGTAGTCAGAA 37800 Query 94841 ATAGTGTTGGAATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGA 94900 | ||| | ||||||| || || || |||| || ||||||||||| || || ||| Sbjct 37799 AGAGTACGGCCGTCCTCCAATTGCTTACCAGCAAAAATCAATCTTTGCTGGTCAGGGGGA 37740 Query 94901 ATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACG 94960 |||||||| ||||| | ||| || | |||||| | | | ||||| | || || Sbjct 37739 ATACCTTCCTTGTCCTGAATCTTGGACTTGACATTGTCAATGGTGTCGGAAGACTCCACC 37680 Query 94961 TCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCATG 95008 |||| ||||| || || || || | || || || || || |||||| Sbjct 37679 TCAAGGGTGATAGTCTTACCGGTTAAGGTCTTGACGAAAATTTGCATG 37632 >seq1 Length=2974285 Score = 109 bits (120), Expect = 5e-19 Identities = 172/245 (70%), Gaps = 4/245 (2%) Strand=Plus/Plus Query 94765 TTTAAAATTTTACACTCCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTG 94824 |||| || ||||| || |||||||||| ||| || | || | ||||| |||||||| Sbjct 1360575 TTTAGCATCTTACATACCACCTCTCAATCTCAATACAAGATGAAGCGTAGACTCCTTTTG 1360634 Query 94825 CACGTTATAATCGCTCATAGTGTTGGA--ATCCTCCAGCTGTTTTCCGCCAAAGATTAAT 94882 | || || || | ||| ||| ||| || | || || || | || || ||| Sbjct 1360635 AATATTGTAGTC--TGATAACGTTCTTCCATCTTCTAATTGCTTACCAGCGAAAATCAAT 1360692 Query 94883 CTTTGCTGATCTGGAGGAATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACA 94942 || ||||| ||||| |||||||| || ||||| | ||| || | |||||| | | | | Sbjct 1360693 CTCTGCTGGTCTGGTGGAATACCCTCCTTGTCCTGAATCTTGGACTTGACKTTGTCAATA 1360752 Query 94943 GTGTCAGCGTGGTCGACGTCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATC 95002 ||||||| | || || |||| || || ||||||||||| | || || |||||||| Sbjct 1360753 GTGTCAGAGGATTCAACCTCAAGGGTAATAGTTTTTCCAGTCAAGGTCTTGACAAAGATT 1360812 Query 95003 TGCAT 95007 ||||| Sbjct 1360813 TGCAT 1360817 Score = 107 bits (118), Expect = 2e-18 Identities = 167/237 (70%), Gaps = 4/237 (2%) Strand=Plus/Plus Query 94773 TTTACACTCCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTAT 94832 ||| || || |||||||||| ||| || | || | ||||| ||||| || | || | Sbjct 1361267 TTTGCATACCACCTCTCAATCTCAATACAAGATGAAGTGTAGACTCCTTCTGAATATTGT 1361326 Query 94833 AATCGCTCATAGTGTT--GGAATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTG 94890 | || | ||| ||| | ||| || | || || || | || || ||||| ||||| Sbjct 1361327 AGTC--TGATAACGTTCTGCCATCTTCTAATTGCTTACCAGCGAAAATCAATCTCTGCTG 1361384 Query 94891 ATCTGGAGGAATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGC 94950 ||||| |||||||| || ||||| | ||| || | ||||||| | | | |||||||| Sbjct 1361385 GTCTGGTGGAATACCCTCCTTGTCCTGAATCTTGGACTTGACGTTGTCAATAGTGTCAGA 1361444 Query 94951 GTGGTCGACGTCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 | || || |||| || || ||||||||||| | || || |||||||| ||||| Sbjct 1361445 GGATTCAACCTCAAGGGTAATAGTTTTTCCAGTCAAGGTCTTTACAAAGATTTGCAT 1361501 Score = 104 bits (114), Expect = 2e-17 Identities = 166/237 (70%), Gaps = 4/237 (2%) Strand=Plus/Plus Query 94773 TTTACACTCCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTAT 94832 ||| || || |||||||||| ||| || | || | ||||| ||||| || | || | Sbjct 1360811 TTTGCATACCACCTCTCAATCTCAATACAAGATGAAGTGTAGACTCCTTCTGAATATTGT 1360870 Query 94833 AATCGCTCATAGTGTT--GGAATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTG 94890 | || | ||| ||| | ||| || | || || || | || || ||||| ||||| Sbjct 1360871 AGTC--TGATAACGTTCTGCCATCTTCTAATTGCTTACCAGCGAAAATCAATCTCTGCTG 1360928 Query 94891 ATCTGGAGGAATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGC 94950 ||||| |||||||| || ||||| | ||| || | |||||| | | | |||||||| Sbjct 1360929 GTCTGGTGGAATACCCTCCTTGTCCTGAATCTTGGACTTGACRTTGTCAATAGTGTCAGA 1360988 Query 94951 GTGGTCGACGTCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 | || || |||| || || ||||||||||| | || || |||||||| ||||| Sbjct 1360989 GGATTCAACCTCAAGGGTAATAGTTTTTCCAGTCAAGGTCTTGACAAAGATTTGCAT 1361045 Score = 104 bits (114), Expect = 2e-17 Identities = 166/237 (70%), Gaps = 4/237 (2%) Strand=Plus/Plus Query 94773 TTTACACTCCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTAT 94832 ||| || || |||||||||| ||| || | || | ||||| ||||| || | || | Sbjct 1361039 TTTGCATACCACCTCTCAATCTCAATACAAGATGAAGTGTAGACTCCTTCTGAATATTGT 1361098 Query 94833 AATCGCTCATAGTGTT--GGAATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTG 94890 | || | ||| ||| | ||| || | || || || | || || ||||| ||||| Sbjct 1361099 AGTC--TGATAACGTTCTGCCATCTTCTAATTGCTTACCAGCGAAAATCAATCTCTGCTG 1361156 Query 94891 ATCTGGAGGAATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGC 94950 ||||| |||||||| || ||||| | ||| || | |||||| | | | |||||||| Sbjct 1361157 GTCTGGTGGAATACCCTCCTTGTCCTGAATCTTGGACTTGACRTTGTCAATAGTGTCAGA 1361216 Query 94951 GTGGTCGACGTCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 | || || |||| || || ||||||||||| | || || |||||||| ||||| Sbjct 1361217 GGATTCAACCTCAAGGGTAATAGTTTTTCCAGTCAAGGTCTTGACAAAGATTTGCAT 1361273 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 448291087927200