Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Wickerhamia_20fluorescens_20[genbank_20GCA_5F001599155.1_202016-03- 01] 20 sequences; 13,178,500 total letters Query= NC_006639.1 Length=24748 Score E Sequences producing significant alignments: (Bits) Value seq6 102 1e-17 seq5 100 4e-17 >seq6 Length=1507273 Score = 102 bits (112), Expect = 1e-17 Identities = 174/251 (69%), Gaps = 1/251 (0%) Strand=Plus/Minus Query 16448 AGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGT 16507 |||||| | |||||||||| || || || || ||||| ||||| | | |||| | Sbjct 461202 AGATCT-TGAGAGATAACATTCAGGGTATAACTAAGCCTGCTATTAGAAGATTGGCCAGA 461144 Query 16508 CGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAG 16567 | ||||| ||||||||| | |||| ||| | || ||||| | | | ||| |||||| Sbjct 461143 AGAGGTGGTGTCAAGCGTATTTCTGCTTTGATTTACGAAGAAGTCAGAGTTGTGTTGAAG 461084 Query 16568 ATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAG 16627 ||| | ||| ||||||| ||||| | || || |||||||| || | ||| Sbjct 461083 TCATTCTTGGAGAACGTTATCAGAGATGCCGTTACTTACACTGAGCACGCAAAGAGAAAG 461024 Query 16628 ACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGCCGTAAGATTTATGGT 16687 ||||| || || |||| | ||||| || ||||| | ||||| | | | |||||| Sbjct 461023 ACTGTTACTTCTTTGGACGTGGTCTACGCGTTGAAGAGACAAGGTAGAACCTTGTATGGT 460964 Query 16688 TTTGGAAGTTA 16698 |||||| |||| Sbjct 460963 TTTGGAGGTTA 460953 >seq5 Length=1501106 Score = 100 bits (110), Expect = 4e-17 Identities = 174/252 (69%), Gaps = 1/252 (0%) Strand=Plus/Minus Query 16448 AGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGT 16507 |||||| | |||||||||| || || |||||||| || ||||| | | |||| | Sbjct 199582 AGATCT-TGAGAGATAACATTCAGGGTATCACCAAACCTGCTATTAGAAGATTGGCCAGA 199524 Query 16508 CGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAG 16567 | ||||| ||||||||| |||||| ||| | || ||||| | | | ||| |||||| Sbjct 199523 AGAGGTGGTGTCAAGCGTATCTCTGCTTTGATTTACGAAGAAGTCAGAGTTGTCTTGAAG 199464 Query 16568 ATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAG 16627 ||| | | | ||| || |||||| | || |||||||||||||| | ||| Sbjct 199463 TCGTTCTTGGAAAACGTCATTAGAGATGCTGTTACTTACACCGAGCACGCTAAGAGAAAG 199404 Query 16628 ACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGCCGTAAGATTTATGGT 16687 ||||| || || |||| | ||||| || ||||| | || ||| | | | || ||| Sbjct 199403 ACTGTTACTTCTTTGGACGTTGTCTACGCGTTGAAGAGACAGGGCAGAACCTTGTACGGT 199344 Query 16688 TTTGGAAGTTAA 16699 || || ||||| Sbjct 199343 TTCGGCGGTTAA 199332 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 79075181713860