Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Wickerhamia_20fluorescens_20[genbank_20GCA_5F001599155.1_202016-03-
01] 20 sequences; 13,178,500 total letters
Query= NC_006966.1
Length=166259
Score E
Sequences producing significant alignments: (Bits) Value
seq1 179 4e-40
>seq1
Length=2974285
Score = 179 bits (198), Expect = 4e-40
Identities = 365/536 (68%), Gaps = 6/536 (1%)
Strand=Plus/Minus
Query 21185 TTTTGATAATCACTAACTCTTTTTTCGAAAAAATTTGTCTTTCCTTCCAATGATATAGAT 21244
||||| || ||||||||||| ||||||||||| || ||||||||| |||| || || |
Sbjct 233318 TTTTGGTAGTCACTAACTCTCTTTTCGAAAAAGTTGGTCTTTCCTGCCAACGAAATGTTT 233259
Query 21245 TCCATAAAATCAAATGGATTT-TCAGATT-TAAATATTTTATTACAACCCAGTTCTGATA 21302
|||||||| ||||| ||||| | | ||| |||| |||| | || | | | || |
Sbjct 233258 TCCATAAAGTCAAAGGGATTAGTAACATTGTAAACCTTTTCGTTG--CCTAATGC-GACA 233202
Query 21303 A-TAATCTATCTGCTACAAATTCTATATATTGACACATTAATTCACAATTCATACCGATC 21361
| |||||| || || ||||| || | || || ||||| |||| ||| |||||||| | |
Sbjct 233201 AGTAATCTGTCGGCAACAAACTCCACGTACTGGCACATCAATTTACAGTTCATACCCAAC 233142
Query 21362 AATTTTACAGGAAGAGCTTTTGTCAAAAAAGATTTTTCTATAGAGACGGCTTCAACAATT 21421
|| | ||| | ||| | || ||||| ||||| |||| ||||| || ||
Sbjct 233141 AACGAAATAGGCAAAGCATCAGTGAAAAACTCCTTTTCAATAGCAACGGCCTCTGTGATA 233082
Query 21422 ATATTTATTATCCTAGATGTACTAGGGGGATACAATAATTGTTTAAACATCAAACATGCA 21481
|| || | ||| | | || | || || || | ||| || |||
Sbjct 233081 ATCTTCTCGACAATAGCAGCATCGGGTCTGTTTTGCAAGTGGGAGAATAACAAGCAAGCA 233022
Query 21482 AAATCACAATGCAAACCTTCATCCCTACTTATTAATTCATTAGAAAATGTTAAACCGGGC 21541
||||| |||||||| ||||| | | ||||| || || || || || ||||| |||
Sbjct 233021 AAATCGGTGTGCAAACCCTCATCACGGCAGATTAACTCGTTGGAGAAAGTCAAACCAGGC 232962
Query 21542 ATTAATCCTCTCTTTTTTAACCAAAATATTGACGCAAATGCTCCTGAAAAGAAAATGCCC 21601
|| || |||||||| || |||||||| || || ||||| | ||| |||||||| ||
Sbjct 232961 ATCAAGCCTCTCTTCTTCAACCAAAAGATGGATGCAAACGATCCACTGAAGAAAATACCT 232902
Query 21602 TCAACGGCAGCAAATGCAACTAATCGTTCACCGTATGTAGATTCTTTATCCAATATCCAT 21661
||||| |||||||||||||| | ||||| || || | || | ||| |||||
Sbjct 232901 TCAACAGCAGCAAATGCAACAAGACGTTCGCCAAATAAGGCCTCGTCATCACTGATCCAG 232842
Query 21662 TTTTCTGCCCATTTTGCCTTTTCTTTAATACAATCAATTGTATCAATAGCTTTTAA 21717
| ||||| | ||||| | ||| || ||| ||| || |||||||| || ||
Sbjct 232841 CGTAAAGCCCAGTCAGCCTTCTTTTTGATGCAAGGAATAGTCTCAATAGCATTGAA 232786
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 531900667024800
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |