Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Wickerhamia_20fluorescens_20[genbank_20GCA_5F001599155.1_202016-03- 01] 20 sequences; 13,178,500 total letters Query= NC_006966.1 Length=166259 Score E Sequences producing significant alignments: (Bits) Value seq1 179 4e-40 >seq1 Length=2974285 Score = 179 bits (198), Expect = 4e-40 Identities = 365/536 (68%), Gaps = 6/536 (1%) Strand=Plus/Minus Query 21185 TTTTGATAATCACTAACTCTTTTTTCGAAAAAATTTGTCTTTCCTTCCAATGATATAGAT 21244 ||||| || ||||||||||| ||||||||||| || ||||||||| |||| || || | Sbjct 233318 TTTTGGTAGTCACTAACTCTCTTTTCGAAAAAGTTGGTCTTTCCTGCCAACGAAATGTTT 233259 Query 21245 TCCATAAAATCAAATGGATTT-TCAGATT-TAAATATTTTATTACAACCCAGTTCTGATA 21302 |||||||| ||||| ||||| | | ||| |||| |||| | || | | | || | Sbjct 233258 TCCATAAAGTCAAAGGGATTAGTAACATTGTAAACCTTTTCGTTG--CCTAATGC-GACA 233202 Query 21303 A-TAATCTATCTGCTACAAATTCTATATATTGACACATTAATTCACAATTCATACCGATC 21361 | |||||| || || ||||| || | || || ||||| |||| ||| |||||||| | | Sbjct 233201 AGTAATCTGTCGGCAACAAACTCCACGTACTGGCACATCAATTTACAGTTCATACCCAAC 233142 Query 21362 AATTTTACAGGAAGAGCTTTTGTCAAAAAAGATTTTTCTATAGAGACGGCTTCAACAATT 21421 || | ||| | ||| | || ||||| ||||| |||| ||||| || || Sbjct 233141 AACGAAATAGGCAAAGCATCAGTGAAAAACTCCTTTTCAATAGCAACGGCCTCTGTGATA 233082 Query 21422 ATATTTATTATCCTAGATGTACTAGGGGGATACAATAATTGTTTAAACATCAAACATGCA 21481 || || | ||| | | || | || || || | ||| || ||| Sbjct 233081 ATCTTCTCGACAATAGCAGCATCGGGTCTGTTTTGCAAGTGGGAGAATAACAAGCAAGCA 233022 Query 21482 AAATCACAATGCAAACCTTCATCCCTACTTATTAATTCATTAGAAAATGTTAAACCGGGC 21541 ||||| |||||||| ||||| | | ||||| || || || || || ||||| ||| Sbjct 233021 AAATCGGTGTGCAAACCCTCATCACGGCAGATTAACTCGTTGGAGAAAGTCAAACCAGGC 232962 Query 21542 ATTAATCCTCTCTTTTTTAACCAAAATATTGACGCAAATGCTCCTGAAAAGAAAATGCCC 21601 || || |||||||| || |||||||| || || ||||| | ||| |||||||| || Sbjct 232961 ATCAAGCCTCTCTTCTTCAACCAAAAGATGGATGCAAACGATCCACTGAAGAAAATACCT 232902 Query 21602 TCAACGGCAGCAAATGCAACTAATCGTTCACCGTATGTAGATTCTTTATCCAATATCCAT 21661 ||||| |||||||||||||| | ||||| || || | || | ||| ||||| Sbjct 232901 TCAACAGCAGCAAATGCAACAAGACGTTCGCCAAATAAGGCCTCGTCATCACTGATCCAG 232842 Query 21662 TTTTCTGCCCATTTTGCCTTTTCTTTAATACAATCAATTGTATCAATAGCTTTTAA 21717 | ||||| | ||||| | ||| || ||| ||| || |||||||| || || Sbjct 232841 CGTAAAGCCCAGTCAGCCTTCTTTTTGATGCAAGGAATAGTCTCAATAGCATTGAA 232786 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 531900667024800