Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Wickerhamia_20fluorescens_20[genbank_20GCA_5F001599155.1_202016-03- 01] 20 sequences; 13,178,500 total letters Query= NC_006998.1 Length=194711 Score E Sequences producing significant alignments: (Bits) Value seq1 277 2e-69 seq5 116 5e-21 >seq1 Length=2974285 Score = 277 bits (306), Expect = 2e-69 Identities = 1446/2287 (63%), Gaps = 47/2287 (2%) Strand=Plus/Minus Query 61988 GTCCAATGTGAATTGAATGGGAGCGGATGCGGGTTTCGTACGTAGATAGTACATTCCCGT 62047 ||| | ||||||||| |||| ||| || || | | || | | |||||||| || || Sbjct 200897 GTCTACTGTGAATTGGATGGCAGCCGAGGCAGCCTGGGTTCTCAAGTAGTACATACCTGT 200838 Query 62048 TTTTAGACCGAGACTCCATCCGTAAAAATGCATACTCGTTAGTTTGGAATAACTCGGATC 62107 ||| || || |||| |||||||||||||| |||| ||| | ||||| Sbjct 200837 TTTGAGTCCCTTCTTCCAACCGTAAAAATGCATCGAGGTTAATTTACCCATTGTAGGATC 200778 Query 62108 TGCTATATGGATATTCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCCAT 62167 || ||||| |||| ||| || |||||| |||||||| | | |||||||||||| Sbjct 200777 CTTGATGTGGATGTTCAAAGACTGGGATTGATCAATGAAGGCGGCACGGTCTGCAGCCAT 200718 Query 62168 TTTTATGATCGTCTTT-TGTGGAATTTCCCAAATAGTTTTATA-AACTCGCTTAATATCT 62225 | || || || ||| || | |||||||| | || || || ||| | ||| | || Sbjct 200717 ATCAATAAT-GTGTTTCTGAGAGATTTCCCATACGGTCTTGTACAACGC-CTTGACTTCG 200660 Query 62226 TCTGGAAGGTTTGTATTC---TGAATGGATCCACCATCTGCCATAATCCTATTCTTGATC 62282 || || | ||| | | || || || || | | || || | ||||| || Sbjct 200659 TCAGGGATGTTGGGCAACAGCTGGATCGAACCGTTGTTGGAAATGATGTTGTTCTTCATG 200600 Query 62283 TCATCATTCCATAATTTTCTC---TCGGTTAAAACTCTAAGGAGATGCGGATTAACTACT 62339 || ||||| | | | | || | | | | | | || || || || | | Sbjct 200599 GAGTCGTTCCAGA---TACCCAAATCCACAAGATCGCGTAACAAATAAGGGTTGACAATT 200543 Query 62340 TGAAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCCACCGAC 62399 || ||||| |||| ||||||||| | | ||| ||||| || || ||||| | || Sbjct 200542 TGGAATTCACCAGCCAATACTCTTCTGGAGTAGATATTGGAAGTGTAGGGTTCAAAGCAC 200483 Query 62400 TCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAAACTA 62459 || || || ||||| ||||| | ||| ||||| || ||||| || || |||||||| | Sbjct 200482 TCGTTGTTACCCAATATTTGGGAAGTGGATGCCGTGGGCATGGGAGCAACCAATAACGAA 200423 Query 62460 TTTCTAAGACCGTATGTTCTG--ATTTTATCTTTTAGAGGTTCCCAATTCCAAAGATCCG 62517 ||||||| ||| ||| | | | ||| | |||| | ||||| | ||| | || Sbjct 200422 TTTCTAATACC--ATGCTTAGCCAATTTTTGCTTTAATGTGTCCCAGTCCCACAACTCAC 200365 Query 62518 ACGGTACAACNNNNNNNNNNNNNNNTTGTAGAATACCGTTACTGGCGTACGATCCTACAT 62577 || |||| | ||| || ||| || || | | Sbjct 200364 TGGGCTTTCTGTCCCAAAGATCAAACTGTAACAAACCCTTGGAGGCTGGAGACCCCTCGT 200305 Query 62578 ATGTATCGTATGGTCCTTCCTTCTCAGCTAGTTCACAACTCGCCTCTAATGCACCGTAAT 62637 | | ||||| | || || || || | ||| ||| || || | |||||||| | Sbjct 200304 AACTTTCGTAAGAACCCTCGACCTGCGCCAATTCGATACTGGCTTCCACTGCACCGTGGT 200245 Query 62638 AAATGGTTTCGAAGATCTTCTTATTTAGATCTTGTGCTTCCAGGCTATCAAATGGATAAT 62697 | ||||||||||| |||| |||| | ||| |||| | ||||| || | Sbjct 200244 ACATGGTTTCGAAAATCTGAATATTCAATTCTCTAGCTTGTTGCGAGTCAAAGGGCAATC 200185 Query 62698 TTAAGAGAATAAACGCGTCCGCTAATCCTTGAACACCAATACCGATAGGTCTATGTCTCT 62757 | || ||||| || || || || || || ||||| | | || ||||||| ||| Sbjct 200184 TCAATGCCATAAAAGCATCTGCCAAACCCTGCACACCCAATGCAATTGGTCTATTCCTCA 200125 Query 62758 TATTAGAGATTTCAGCTTCTGGAATAGGATAATAATTAATATCTATAATTTTATTGAGAT 62817 | ||||| ||| |||||||||| || ||| | ||| ||| || ||| | || | | Sbjct 200124 TGTTAGATCTTTTGGCTTCTGGAACGGGGTAAAAGTTACGATCAATGATTCTGTTCAAGT 200065 Query 62818 TTCTGACAATTACTTTGACCACATCCTTCAGTTTGAGAAAAT-------CAAATCGC--C 62868 | | | || || ||| || || | || || ||| | ||| | | | Sbjct 200064 TACGGGTAACAACCTTGGTAACTTCATGAAGCTTCTCAAAGTTGTACCACAAGTTGTTGC 200005 Query 62869 CATCTATT---ACAAACATGTTCAAGGCAACAGATGCCAGATTACAAACGGCTACCTCAT 62925 ||| || |||||| | | || | |||||||| ||||| || || ||||||| Sbjct 200004 TGTCTTTTTCAACAAACGAGGGAAGTGCGATAGATGCCAAGTTACATACAGCAACCTCAT 199945 Query 62926 TAGCATCCGCATATTGTATTATCTCAGTGCAAAGATTACTACACTTGATAGTTCCTAAAT 62985 | | |||| | || ||| || | ||| | | ||||| || || | Sbjct 199944 CTGGCGAGGAGTATTCGACAATTTCACAACACAAATTGGAAGATTTGATGACACCCAAGT 199885 Query 62986 TTTGTTGATTACTCTTTTTGTTACACGCATCCTTATAAAGAATGAATGGAGTACCAGTTT 63045 | | ||||||| | ||||| || || ||||| || || | |||||||| ||||| |||| Sbjct 199884 TCTTTTGATTAGTTTTTTTATTGCATGCATCTTTGTACAACATGAATGGGGTACCGGTTT 199825 Query 63046 CAATCTGAGATTCTATAATCGCTTTCCAGACGACTCGAGCCTTTATTATAGATTTGTATC 63105 | | || | || | ||| || | ||| | ||||||| || | ||| | | Sbjct 199824 CGGTTTGCGCCTCCAAAATGGCGTACCATAATTTCTGAGCCTTGATAGTC--TTTCTTCC 199767 Query 63106 TCC--TTTCTCTTTCGTATAGTGTATACAATCGTTCGAACTCGTCTCCCCAAACATTGTC 63163 | |||| | |||||| |||||| || ||||| || || |||||| | Sbjct 199766 ACGGTTTTCACGTTCGTACTTCTCGTACAATGCCTCAAACTCATCACCGTAAACATCGGA 199707 Query 63164 CAATCCAGGACATTCATCCGGACACATCAACGACCACTCTCCGTCATCCTTCACTCGTTT 63223 ||| || | |||| ||| | | ||| | |||||| | | | || |||| || Sbjct 199706 CAAACCTTGGGCCTCATTAGGAGAGAACAAGGTCCACTCAGCATTCTGCTCAACTCTCTT 199647 Query 63224 CATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATGTTCCTCGTT 63283 |||||| | ||||||||||| | ||| || | |||||| | || ||| || || Sbjct 199646 CATAAACAAGTCAGGAATCCACAATGCTGGGAACAAATCTCTTGCCCTCATTTCTTCCTT 199587 Query 63284 TCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTA 63343 || ||||||| ||| ||||| ||| | | ||||| | ||||| |||||||| || Sbjct 199586 ACCATGATTCTTTCTAATATCGATGAAATCAAAGATATCCGCGTGCCATGGTTCCAAATA 199527 Query 63344 TATGGCCATAACTCCAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATT 63403 || ||| | | || || | || || || |||||||| | ||| | ||| |||||||| Sbjct 199526 TAAGGCAAATGCACCGGGTCTCTTATTACCACCCTGATCCACGTAACGAGCAGTGTTATT 199467 Query 63404 ATAAACTCTCAACATTGGAATAATACCGTTTGATATACCATTGGTACCGGAGATATAGCT 63463 ||||||| | ||| ||||| ||||| || || |||| |||||||| | || ||| Sbjct 199466 GAAAACTCTAACCATAGGAATGATACCATTAGAGGTACCGTTGGTACCAGCAATGTAGGC 199407 Query 63464 TCCACTGGCACGAATATTACTAATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAA 63523 ||| | | ||||| || || || ||| || || || || | || || || || Sbjct 199406 ACCAGTCGAGCGAATGTTGTGTATGTGTAAACCAATACCTCCAGCACTCTTGGAAATCAA 199347 Query 63524 TGCGCATCGTTTTAACGTGTCATAGATACCCTCTATGCTATCATCGATCATGTTAAGTAG 63583 || ||| || || || ||||| ||||| || || |||||| |||| || | Sbjct 199346 GGCACATGTCTTCAAGGTATCATAAATACCGTCAATAGAATCATCTTTCATAGCAATCAA 199287 Query 63584 AAAACAGCTAGACATTTG-GTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGT 63642 ||| || |||||||| | | | | || || |||||||| || ||||| || ||| Sbjct 199286 AAAGCACGAGGACATTTGAGGGTTGGGT-GTACCAGCATTAAACAAAGTAGGCGAGCCGT 199228 Query 63643 GCGTAAACCATTTTTCAGAAAGTAGATTGTACGTCTCAATAGCTGAGTCTATATCCCATT 63702 | ||||| | | | || | | |||||| || ||||| || | || || Sbjct 199227 GGGTAAAGTGTCTCTGGGACATCATATTGTAAGTTTCAATGACTCTGGGAATGTCGTCAC 199168 Query 63703 GATGAATTCCTACTGCGACACGCATTAACATGTGCTGAGGTCTTTCAACGATCTTGTTGT 63762 |||||| || | || || | ||| | | ||||||||||||||| ||| ||| | Sbjct 199167 CATGAATACCAATGGCAACTCTCATAATTAAGTGCTGAGGTCTTTCTGCGACTTTGCCAT 199108 Query 63763 TTATTTTCAACAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGT 63822 | ||| | || | ||| ||| | || |||||||| |||||||| || ||||| ||| | Sbjct 199107 TAATTCTTAAAAGGTAAGATCTCTCTAAAGTTTTGAAACCAAAGTAATTGTAGTTAAAAT 199048 Query 63823 CTCGTTCGTAAATAATAACCGAGTTGAGTTTATCCTTATATTTGTTAACTATATCC-ATG 63881 | || || | | ||| | |||| | | ||| || ||| ||| || || ||| Sbjct 199047 CACGATCAAATACAATTGCAGAGTCCAAGTCATCAGCGTACTTGGTAATAATGTCGTATG 198988 Query 63882 GTGATACTTGAA-ATAATCGGAGAATGTTTCCCATTTTTAGGATTAACATAGTTGAATAA 63940 | | || | | || || || || || ||| |||| || |||||||||| | || Sbjct 198987 TT--TCCTGGGAGATCATAGGGGAGTGCAAACCAGTTTTGGGGTTAACATAGTCATACAA 198930 Query 63941 ATCCT--CCATCACTTCACTAAATAGtttttttGTTTCCTTGTGTAGATTTGATACGGCT 63998 |||| | | ||||| | ||| | ||| | |||| ||||| | || || || || Sbjct 198929 CTCCTTACTAACACTTGA--AAACTGCTTTGTAGTTTGTTTGTGCAAGTTAGAAACAGCA 198872 Query 63999 ATTCTGGCGGCTAGAATGGCATAATCCGGATGTTGTGTAGTACAAGTG-GCTGCTATTTC 64057 ||||| || || | || |||||||| || || ||||| || || || || | || Sbjct 198871 ATTCTTGCTGCCAAGATAGCATAATCTGGGTGGATAGTAGT-CATGTATGCGGCAGTCTC 198813 Query 64058 GGCTGCCAGAGTGTCCAATTCTACCGTTGTTACTCCATTATATATTCCTTGAATAACCTT 64117 ||||| | | || | || | || || || || | || | ||| |||||| | Sbjct 198812 TGCTGCTAAGTTATCAAGCTCAATAGTGGTAACACCTTGGTACACACCTGAAATAACTCT 198753 Query 64118 CATAGCTATTTTAATAGGATCTATATGATCCGTGTTTAAGCCATAACATAATTT-TCTAA 64176 || |||| | | ||| | |||| | || |||||||||||||||| | | || Sbjct 198752 TTGAGTGATTTGCACGGCATCAACGTGATTGGAGTCTAAGCCATAACATAATCTCTGTAC 198693 Query 64177 TACGAGACGTGATTTTATCAAACATGACATTTTCCTTGTATCCATTTCGTTTAATGACAA 64236 | | || || ||||||||||| |||| || ||| |||| || ||||| ||| Sbjct 198692 T-CTAGCAGTAATTTTATCAAAACGGACAGGCTCTTTGCGACCATGTCTTTTAACCACAT 198634 Query 64237 ACATTTT 64243 ||||||| Sbjct 198633 ACATTTT 198627 Score = 223 bits (246), Expect = 4e-53 Identities = 597/903 (66%), Gaps = 15/903 (2%) Strand=Plus/Minus Query 32992 TCTTGAGACATAACTCCCATTTTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTT 33051 |||| || |||||| || |||||||| |||| || | ||||||||||| || || Sbjct 233338 TCTT-AGCCATAACACCAGCCTTTTGGTAGTCACTAACTCTCTTTTCGAAAAAGTTGGTC 233280 Query 33052 TTTCCTTCCAATGATATATTTTCCATGAAATCAAACGGATTGGTAACATTATAAAttttt 33111 |||||| |||| || || |||||||| || ||||| ||||| |||||||| |||| ||| Sbjct 233279 TTTCCTGCCAACGAAATGTTTTCCATAAAGTCAAAGGGATTAGTAACATTGTAAACCTTT 233220 Query 33112 ttAAATCCCAATTCAGAAATCAATCTATCCGCGACGAATTCTATATATGTTTTCATCATT 33171 | || ||| | || ||||| || || || || || | || ||||| | Sbjct 233219 TCGTTGCCTAATGCGACAAGTAATCTGTCGGCAACAAACTCCACGTACTGGCACATCAAT 233160 Query 33172 TCACAATTCATTCCTATAAGTTTAACTGGAAGAGCCGCAGTAAGAAATTCTTGTTCAATG 33231 | ||| ||||| || | | || || | ||| |||| | ||| || | |||||| Sbjct 233159 TTACAGTTCATACCCAACAACGAAATAGGCAAAGCATCAGTGAAAAACTCCTTTTCAATA 233100 Query 33232 GATACCGCATCTGTTATAATAGATCTA-ACGGTTTCTTCACTCGGTGGATGCAAT--AAA 33288 | || || ||||| ||||| ||| || | | || |||| | || | || Sbjct 233099 GCAACGGCCTCTGTGATAATCT-TCTCGACAATAGCAGCA-TCGG-GTCTGTTTTGCAAG 233043 Query 33289 TGTTTAAACATCAAACATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCG 33348 || || | ||| || || |||||| ||||| |||||| || | | |||| ||| Sbjct 233042 TGGGAGAATAACAAGCAAGCAAAATCGGTGTGCAAACCCTCATCACGGCAGATTAACTCG 232983 Query 33349 TTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAAT 33408 ||||| || || | || ||||| | ||| | ||| || | |||||| ||||| || || Sbjct 232982 TTGGAGAAAGTCAAACCAGGCATCAAGCCTCTCTTCTTCAACCAAAAGATGGATGCAAAC 232923 Query 33409 GATCCAGAAAAGAAGATTCCTTCTACTGCAGCAAAGGCAATAAGTCTCTCTCCATAACCG 33468 |||||| ||||| || ||||| || |||||||| |||| ||| | || ||| | | Sbjct 232922 GATCCACTGAAGAAAATACCTTCAACAGCAGCAAATGCAACAAGACGTTCGCCAAATAAG 232863 Query 33469 GCGCTGTCATGT---ATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATC 33525 || ||||| ||||| | |||||| || ||||||||||| | ||||| || Sbjct 232862 GCCTCGTCATCACTGATCCAGCGTAAAGCCCAGTCAGCCTTCTTTTTGATGCAAGGAATA 232803 Query 33526 GTTTCTATGGCATTAAAGAGATAGtttttttCATTACTATCTTTAACATAAGTATCGATC 33585 || || || ||||| || | | ||| | || || || || | ||| || |||||| Sbjct 232802 GTCTCAATAGCATTGAATAAAAAGTCTGCCTCCTTGGGGTCCTTGATATAGGTGTCGATC 232743 Query 33586 AAAAGACTATACATTTCCGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACAT 33645 || | || | || || || || ||||| || || || || ||||| || ||| Sbjct 232742 AACAAGGAGTAGGTCTCTGAGTGGATATTTTCCATCATGATTTGGAAACCGTAAAAGCAT 232683 Query 33646 CTAGCCTCGGTAATCTGTACTTCTGTACAAAATCGTTCCGCCAAATTTTCATTCACTATT 33705 | || || | |||||| || || | | | || ||| |||| || || || || || Sbjct 232682 TTGGCTTCTGGAATCTGAACCTCGGCAGAGAAGTTCTCCACCAAGTTCTCGTTAACAATA 232623 Query 33706 CCGTCACTGGCTGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTCTGGTGTT 33765 || || || || ||||| ||||| | | | || || | |||| || ||| Sbjct 232622 CCATCGGAAGCAGCGAAAAATGCCAAAATACGGGAAATGAAGAAACGCTCGT-TGTCGTT 232564 Query 33766 ----AGTTTATTCCAATCATTGATATCTTTAGATATATCTACTTCTTCCACTGTCCAAAA 33821 | || ||||| |||| | ||||| | ||| | ||| || | |||||||| Sbjct 232563 CAAGCGATTGTTCCAGTCATGAGTGTCTTTTCCCAAATCGATTTCCTCTGCAGTCCAAAA 232504 Query 33822 TGATGCCTCTGCCTTTTTATACATGTTCCAGATGTCATAATATTGGATTGGGAAAATAAC 33881 ||||| ||||| || || ||||| | ||| || || | |||| || ||||||| ||| Sbjct 232503 AGATGCTTCTGCTTTCTTGTACATTTGCCAAATCTCGTGGTATTTAATAGGGAAAAGAAC 232444 Query 33882 AAA 33884 ||| Sbjct 232443 AAA 232441 >seq5 Length=1501106 Score = 116 bits (128), Expect = 5e-21 Identities = 354/541 (65%), Gaps = 6/541 (1%) Strand=Plus/Minus Query 62968 ACTTGATAGTTCCTAAATTTTGTTGATTACTCTTTTTGTTACACGCATCCTTATAAAGAA 63027 |||| || || |||| ||||| || || ||| |||||| ||||| ||||| | | Sbjct 762059 ACTTAATTGTCCCTAGATTTTTCTGGTTTGATTTTGAGTTACATGCATCTTTATATAACA 762000 Query 63028 TGAATGGAGTACCAGTTTCAATCTGAGATTCTATAATCGCTTTCCAGACGACTCGAGCCT 63087 || | || || ||||| | || ||||||| ||| ||| ||| | | |||| Sbjct 761999 TGTACGGCCCTCCTGTTTCTGTTTGGGATTCTAAAATGGCTAGCCATAATTTCTGCGCCT 761940 Query 63088 TTATTATAGATTTGTATCTCCTTTCTCTTTCGTATAGT--GTATACAATCGTTCGAACTC 63145 | ||| || |||| || | ||| || || | ||||| | | | | || || Sbjct 761939 TAATTGTAACTTTGGCTCGACCTTCAGACTCATAGGATTCGTATA-ACTTGA-CAAAGTC 761882 Query 63146 GTCTCCCCAAACATTGTCCAATCCAGGACATTCATCCGGACACATCAACGACCACTCTCC 63205 ||||| || || |||||| |||||| |||||| || | | ||| ||||| ||| Sbjct 761881 ATCTCCGTAACAATCGTCCAACCCAGGAGCTTCATCTGGTGAAAACAATGACCATTCTAG 761822 Query 63206 GTCATCCTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCT 63265 | | ||| |||| ||||| || | ||| | ||||| || | ||||| |||||| Sbjct 761821 ATTTTGCTTAACTCTCTTCATGAATAAATCGGATATCCATAGTCCATAAAATAAATCTCT 761762 Query 63266 GGTTCTATGTTCCTCGTTTCCTGT-ATTCTTTTTAAGATCGAGGAACGCCATAATATCAG 63324 ||||| || || |||| | || ||| || || | || ||| | | | |||||| Sbjct 761761 GGTTC-GCATTTCTTGTTTGCCGTGATTTTTCTTTAAATTGAGTACATCGAATATATCAC 761703 Query 63325 AATGCCACGGTTCCAAGTATATGGCCATAACTCCAGGCCGTTTGTTTCCTCCCTGATCTA 63384 ||||||| || || | ||||| || | | | || || | | ||||| ||||| | Sbjct 761702 AATGCCATGGCTCAATGTATACTGCAAAAGCACCTGGTCTCCGACTACCTCCTTGATCAA 761643 Query 63385 TGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCGTTTGATATACCAT 63444 ||||| || || | ||| | |||| |||||| ||||| || || ||||| | |||| Sbjct 761642 CATATCTTGCAGTTTCATTGAATACTCGCAACATGGGAATTATTCCAGTTGATGTTCCAT 761583 Query 63445 TGGTACCGGAGATATAGCTTCCACTGGCACGAATATTACTAATTGATAGACCTATTCCCC 63504 | | | | ||| ||| |||| | | |||| |||| ||| || |||||||| | Sbjct 761582 TTGAGCTAGCGATGTAGGATCCATTACCCCGAACATTATGAATATGTAAGCCTATTCCAC 761523 Query 63505 C 63505 | Sbjct 761522 C 761522 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 622947044263200