Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Wickerhamia_20fluorescens_20[genbank_20GCA_5F001599155.1_202016-03- 01] 20 sequences; 13,178,500 total letters Query= NC_007151.1 Length=149622 Score E Sequences producing significant alignments: (Bits) Value seq1 95.1 1e-14 >seq1 Length=2974285 Score = 95.1 bits (104), Expect = 1e-14 Identities = 248/374 (66%), Gaps = 17/374 (5%) Strand=Plus/Minus Query 147456 TTGACCACTTGATACTCGCCCGACAGAACTCTTCGTACGTACAAATTACTAGTAAACGGC 147515 ||||| | ||| | || || | || ||||||| ||| | ||| ||| | || Sbjct 200551 TTGACAATTTGGAATTCACCAGCCAATACTCTTCTGGAGTAGATATTGGAAGTGTAGGGT 200492 Query 147516 TCGAACGACTCGTTGTTACCTAGAATCTGTGCAGTCGTTGCCGTCGGCATGTAAGCAATC 147575 || || ||||||||||||| | || || | ||| | |||||| |||||| ||||| | Sbjct 200491 TCAAAGCACTCGTTGTTACCCAATATTTGGGAAGTGGATGCCGTGGGCATGGGAGCAACC 200432 Query 147576 AATAATGAATTGCGTAAGCCGTGCATAGCCATTTCTCGCTTAAGCTCGTCCCAGTTCCAA 147635 ||||| ||||| | | || ||| |||||| || | |||| | |||||||| ||| Sbjct 200431 AATAACGAATTTCTAATACCATGCTTAGCCAATTTTTGCTTTAATGTGTCCCAGTCCCAC 200372 Query 147636 AGATCATTCGATTGGTTAATATTCCACAAATCAAACTGTAAAAGTCCACAACTTGCAGGG 147695 | ||| | | | || | | ||| | |||||||||||| | || |||| | || Sbjct 200371 AACTCACTGG---GCTTTCTGTCCCAAAGATCAAACTGTAACAAACC----CTTGGA-GG 200320 Query 147696 CT-----TCCATCGTAAGAATCGTATGTTCCGTGCAGTTTAGCTAGTTCGATACTTTGAC 147750 || || |||||| ||||| | || | | | || | |||||||| || | Sbjct 200319 CTGGAGACCCCTCGTAACTTTCGTAAGAACCCTCGACCTGCGCCAATTCGATAC--TGGC 200262 Query 147751 TT--AGTGCACCATAATAAATAGTTTCTGAAATCTTTTTATTTAAATCTCTAGCCTCTTG 147808 || | |||||| | || || ||||| |||||| |||| || |||||||| | ||| Sbjct 200261 TTCCACTGCACCGTGGTACATGGTTTCGAAAATCTGAATATTCAATTCTCTAGCTTGTTG 200202 Query 147809 GCTGTCGTAGGGCA 147822 ||| |||||| Sbjct 200201 CGAGTCAAAGGGCA 200188 Score = 86.0 bits (94), Expect = 6e-12 Identities = 145/210 (69%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 119661 TTTTCaaaaaaaTTAGTCTTGCCCTCAAGAGATATGTTATTCATAAACTCGAAAGGATTT 119720 ||||| ||||| || ||||| || | | || ||||| | |||||| || || ||||| Sbjct 233297 TTTTCGAAAAAGTTGGTCTTTCCTGCCAACGAAATGTTTTCCATAAAGTCAAAGGGATTA 233238 Query 119721 GCAGTGTTGAAATGCTTGTCGTAGCCCAACTCGAACAACAGTCGATCTGCCACAAACTCG 119780 | | ||| || ||| |||| ||| || ||| | | || || || |||||||| Sbjct 233237 GTAACATTGTAAACCTTTTCGTTGCCTAATGCGACAAGTAATCTGTCGGCAACAAACTCC 233178 Query 119781 ATGTATTCGCACATGGATTGCGAATTCATGCCCAACATAGCGACCGGTAAAGCATTGGTA 119840 | ||| | |||||| ||| | ||||| ||||||| | | || ||||||| || Sbjct 233177 ACGTACTGGCACATCAATTTACAGTTCATACCCAACAACGAAATAGGCAAAGCATCAGTG 233118 Query 119841 AAGAAATCCTTTTCAATGTCGACCGCTTCT 119870 || || ||||||||||| | || || ||| Sbjct 233117 AAAAACTCCTTTTCAATAGCAACGGCCTCT 233088 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 478662280334400