Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Wickerhamia_20fluorescens_20[genbank_20GCA_5F001599155.1_202016-03-
01] 20 sequences; 13,178,500 total letters
Query= NC_007151.1
Length=149622
Score E
Sequences producing significant alignments: (Bits) Value
seq1 95.1 1e-14
>seq1
Length=2974285
Score = 95.1 bits (104), Expect = 1e-14
Identities = 248/374 (66%), Gaps = 17/374 (5%)
Strand=Plus/Minus
Query 147456 TTGACCACTTGATACTCGCCCGACAGAACTCTTCGTACGTACAAATTACTAGTAAACGGC 147515
||||| | ||| | || || | || ||||||| ||| | ||| ||| | ||
Sbjct 200551 TTGACAATTTGGAATTCACCAGCCAATACTCTTCTGGAGTAGATATTGGAAGTGTAGGGT 200492
Query 147516 TCGAACGACTCGTTGTTACCTAGAATCTGTGCAGTCGTTGCCGTCGGCATGTAAGCAATC 147575
|| || ||||||||||||| | || || | ||| | |||||| |||||| ||||| |
Sbjct 200491 TCAAAGCACTCGTTGTTACCCAATATTTGGGAAGTGGATGCCGTGGGCATGGGAGCAACC 200432
Query 147576 AATAATGAATTGCGTAAGCCGTGCATAGCCATTTCTCGCTTAAGCTCGTCCCAGTTCCAA 147635
||||| ||||| | | || ||| |||||| || | |||| | |||||||| |||
Sbjct 200431 AATAACGAATTTCTAATACCATGCTTAGCCAATTTTTGCTTTAATGTGTCCCAGTCCCAC 200372
Query 147636 AGATCATTCGATTGGTTAATATTCCACAAATCAAACTGTAAAAGTCCACAACTTGCAGGG 147695
| ||| | | | || | | ||| | |||||||||||| | || |||| | ||
Sbjct 200371 AACTCACTGG---GCTTTCTGTCCCAAAGATCAAACTGTAACAAACC----CTTGGA-GG 200320
Query 147696 CT-----TCCATCGTAAGAATCGTATGTTCCGTGCAGTTTAGCTAGTTCGATACTTTGAC 147750
|| || |||||| ||||| | || | | | || | |||||||| || |
Sbjct 200319 CTGGAGACCCCTCGTAACTTTCGTAAGAACCCTCGACCTGCGCCAATTCGATAC--TGGC 200262
Query 147751 TT--AGTGCACCATAATAAATAGTTTCTGAAATCTTTTTATTTAAATCTCTAGCCTCTTG 147808
|| | |||||| | || || ||||| |||||| |||| || |||||||| | |||
Sbjct 200261 TTCCACTGCACCGTGGTACATGGTTTCGAAAATCTGAATATTCAATTCTCTAGCTTGTTG 200202
Query 147809 GCTGTCGTAGGGCA 147822
||| ||||||
Sbjct 200201 CGAGTCAAAGGGCA 200188
Score = 86.0 bits (94), Expect = 6e-12
Identities = 145/210 (69%), Gaps = 0/210 (0%)
Strand=Plus/Minus
Query 119661 TTTTCaaaaaaaTTAGTCTTGCCCTCAAGAGATATGTTATTCATAAACTCGAAAGGATTT 119720
||||| ||||| || ||||| || | | || ||||| | |||||| || || |||||
Sbjct 233297 TTTTCGAAAAAGTTGGTCTTTCCTGCCAACGAAATGTTTTCCATAAAGTCAAAGGGATTA 233238
Query 119721 GCAGTGTTGAAATGCTTGTCGTAGCCCAACTCGAACAACAGTCGATCTGCCACAAACTCG 119780
| | ||| || ||| |||| ||| || ||| | | || || || ||||||||
Sbjct 233237 GTAACATTGTAAACCTTTTCGTTGCCTAATGCGACAAGTAATCTGTCGGCAACAAACTCC 233178
Query 119781 ATGTATTCGCACATGGATTGCGAATTCATGCCCAACATAGCGACCGGTAAAGCATTGGTA 119840
| ||| | |||||| ||| | ||||| ||||||| | | || ||||||| ||
Sbjct 233177 ACGTACTGGCACATCAATTTACAGTTCATACCCAACAACGAAATAGGCAAAGCATCAGTG 233118
Query 119841 AAGAAATCCTTTTCAATGTCGACCGCTTCT 119870
|| || ||||||||||| | || || |||
Sbjct 233117 AAAAACTCCTTTTCAATAGCAACGGCCTCT 233088
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 478662280334400
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |