Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Wickerhamia_20fluorescens_20[genbank_20GCA_5F001599155.1_202016-03- 01] 20 sequences; 13,178,500 total letters Query= NC_007346.1 Length=407339 Score E Sequences producing significant alignments: (Bits) Value seq1 118 3e-21 >seq1 Length=2974285 Score = 118 bits (130), Expect = 3e-21 Identities = 310/467 (66%), Gaps = 11/467 (2%) Strand=Plus/Plus Query 22489 GAACGTCTTATTGCATTTGCTGTGGTTGAAGGCATTTTCTTTTCTGGAGCATTTTGTGCA 22548 ||||||||| |||||||||||| |||||||| |||||||| |||| | ||| | Sbjct 232873 GAACGTCTTGTTGCATTTGCTGCTGTTGAAGGTATTTTCTTCAGTGGATCGTTTGCATCC 232932 Query 22549 ATCTTTTGGCTaaaaaaaCGTGCAATTATGCCGGGTCTAACGTTTTCAAATGAGTTAATT 22608 ||||||||| | || || | | | ||||| ||| | || || || || |||||||| Sbjct 232933 ATCTTTTGGTTGAAGAAGAGAGGCTTGATGCCTGGTTTGACTTTCTCCAACGAGTTAATC 232992 Query 22609 AGCCGAGATGAGGGTCTTCATACCGATTTTGCGTGTATGCTATATCGGAATCATATCATT 22668 |||| ||||||||| | || ||||||||||| || || ||| || || | | | Sbjct 232993 TGCCGTGATGAGGGTTTGCACACCGATTTTGCTTGCTTGTTAT-TC----TCCCA-CTTG 233046 Query 22669 CATAAACTTCCATATGAAACTGTACTTG---ATATTATTACAAATGCAGTTGAACTTGAA 22725 || || || ||| || | | | | ||||| ||| | || |||| ||||| Sbjct 233047 CAAAACAGACCCGATGCTGCTATTGTCGAGAAGATTATCACAGAGGCCGTTGCTATTGAA 233106 Query 22726 CGTCTATTTATTTGCGAGGCGTTACC-AGTAAGTCTCATTGGTATCAATGCCGAATCAAT 22784 ||| | || || || || | | || | | ||||| || ||| || Sbjct 233107 AAGGAGTTTTTCACTGATGCTTTGCCTATTTCGT-TGTTGGGTATGAACTGTAAATTGAT 233165 Query 22785 GAGTACATATATTAAATTTGTTGCAGATCGTCTATTAATTTCACTCGGTTATGCAAAGCA 22844 | | || | | |||||||| || | || | | || | || | | |||| Sbjct 233166 GTGCCAGTACGTGGAGTTTGTTGCCGACAGATTACTTGTCGCATTAGGCAACGAAAAGGT 233225 Query 22845 TTATAACGTCGTTAATCCATTTGAATGGATGGAACTTATTTCACTTGAAGGAAAGACCAA 22904 ||| || || |||||| ||||| | |||||| ||||| | | |||||||||||| Sbjct 233226 TTACAATGTTACTAATCCCTTTGACTTTATGGAAAACATTTCGTTGGCAGGAAAGACCAA 233285 Query 22905 TTTCTTCGAAAAAAGAGTTGGTGAATACCAAAAAGCAGGTGTTATGG 22951 || |||||||| |||||| |||| |||||||| || |||||||||| Sbjct 233286 CTTTTTCGAAAAGAGAGTTAGTGACTACCAAAAGGCTGGTGTTATGG 233332 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1303353266015640