Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Wickerhamia_20fluorescens_20[genbank_20GCA_5F001599155.1_202016-03- 01] 20 sequences; 13,178,500 total letters Query= NC_007383.1 Length=134394 Score E Sequences producing significant alignments: (Bits) Value seq1 140 3e-28 seq7 95.1 1e-14 >seq1 Length=2974285 Score = 140 bits (154), Expect = 3e-28 Identities = 176/238 (74%), Gaps = 3/238 (1%) Strand=Plus/Minus Query 23982 CCAA-ACAAAATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGT 24040 |||| ||| ||||||| | |||||||| || || ||||||||| | |||||| | || || Sbjct 1361511 CCAACACACAATGCAAATCTTTGTAAAGACCTTGACTGGAAAAACTATTACCCTTGAGGT 1361452 Query 24041 CGAGGCCAACGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACC 24100 || || ||||| || || | ||||| |||||| ||||| || || || || Sbjct 1361451 TGAATCCTCTGACACTATTGACAACGTCAAGTCCAAGATTCAGGACAAGGAGGGTATTCC 1361392 Query 24101 TCCCGATCAACAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAG 24160 || || || |||||| |||||| || || |||||| | ||||||| ||||| ||| | Sbjct 1361391 ACCAGACCAGCAGAGATTGATTTTCGCTGGTAAGCAATTAGAAGATGGCAGAA-CGTTAT 1361333 Query 24161 C-GATTATAACATTCAAAAAGAATCTACAATTCATTTAGTGTTAAGATTGAGAGGAGG 24217 | || || || ||||| || || |||||| ||||| | || || ||||||||||| || Sbjct 1361332 CAGACTACAATATTCAGAAGGAGTCTACACTTCATCTTGTATTGAGATTGAGAGGTGG 1361275 Score = 129 bits (142), Expect = 5e-25 Identities = 167/228 (73%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 |||||| | ||||| || || || ||||||||| | |||||| | || || || || Sbjct 1361045 ATGCAAATCTTTGTCAAGACCTTGACTGGAAAAACTATTACCCTTGAGGTTGAATCCTCT 1360986 Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110 ||||| || || | ||||| |||||| ||||| || || || || || || || Sbjct 1360985 GACACTATTGACAAYGTCAAGTCCAAGATTCAGGACAAGGAGGGTATTCCACCAGACCAG 1360926 Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGC-GATTATAA 24169 |||||| |||||| || || |||||| | ||||||| ||||| ||| | | || || || Sbjct 1360925 CAGAGATTGATTTTCGCTGGTAAGCAATTAGAAGATGGCAGAA-CGTTATCAGACTACAA 1360867 Query 24170 CATTCAAAAAGAATCTACAATTCATTTAGTGTTAAGATTGAGAGGAGG 24217 ||||| || || |||||| ||||| | || || ||||||||||| || Sbjct 1360866 TATTCAGAAGGAGTCTACACTTCATCTTGTATTGAGATTGAGAGGTGG 1360819 Score = 129 bits (142), Expect = 5e-25 Identities = 167/228 (73%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 |||||| | ||||| || || || ||||||||| | |||||| | || || || || Sbjct 1361273 ATGCAAATCTTTGTCAAGACCTTGACTGGAAAAACTATTACCCTTGAGGTTGAATCCTCT 1361214 Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110 ||||| || || | ||||| |||||| ||||| || || || || || || || Sbjct 1361213 GACACTATTGACAAYGTCAAGTCCAAGATTCAGGACAAGGAGGGTATTCCACCAGACCAG 1361154 Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGC-GATTATAA 24169 |||||| |||||| || || |||||| | ||||||| ||||| ||| | | || || || Sbjct 1361153 CAGAGATTGATTTTCGCTGGTAAGCAATTAGAAGATGGCAGAA-CGTTATCAGACTACAA 1361095 Query 24170 CATTCAAAAAGAATCTACAATTCATTTAGTGTTAAGATTGAGAGGAGG 24217 ||||| || || |||||| ||||| | || || ||||||||||| || Sbjct 1361094 TATTCAGAAGGAGTCTACACTTCATCTTGTATTGAGATTGAGAGGTGG 1361047 Score = 127 bits (140), Expect = 2e-24 Identities = 166/228 (73%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 |||||| | ||||| || || || ||||||||| | |||||| | || || || || Sbjct 1360817 ATGCAAATCTTTGTCAAGACCTTGACTGGAAAAACTATTACCCTTGAGGTTGAATCCTCT 1360758 Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110 ||||| || || | ||||| |||||| ||||| || || || || || || || Sbjct 1360757 GACACTATTGACAAMGTCAAGTCCAAGATTCAGGACAAGGAGGGTATTCCACCAGACCAG 1360698 Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGC-GATTATAA 24169 |||||| |||||| || || |||||| | ||||||| |||| ||| | | || || || Sbjct 1360697 CAGAGATTGATTTTCGCTGGTAAGCAATTAGAAGATGGAAGAA-CGTTATCAGACTACAA 1360639 Query 24170 CATTCAAAAAGAATCTACAATTCATTTAGTGTTAAGATTGAGAGGAGG 24217 |||||||| || ||||| ||||| | || || ||||||||||| || Sbjct 1360638 TATTCAAAAGGAGTCTACGCTTCATCTTGTATTGAGATTGAGAGGTGG 1360591 >seq7 Length=860703 Score = 95.1 bits (104), Expect = 1e-14 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 |||||| | || || || || ||||| || || | || ||| | || || ||| | | Sbjct 37633 ATGCAAATTTTCGTCAAGACCTTAACCGGTAAGACTATCACCCTTGAGGTGGAGTCTTCC 37692 Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110 |||||||| || | ||||| |||||| ||||| ||||| || || || || || Sbjct 37693 GACACCATTGACAATGTCAAGTCCAAGATTCAGGACAAGGAAGGTATTCCCCCTGACCAG 37752 Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAAC 24170 || ||| |||||| | || |||||| | || || | | | | | || || ||| Sbjct 37753 CAAAGATTGATTTTTGCTGGTAAGCAATTGGAGGACGGCCGTACTCTTTCTGACTACAAC 37812 Query 24171 ATTCAAAAAGAATCTACAATTCATTTAGTGTTAAGATTGAGAGGAGG 24217 || ||||| || ||||| |||| || ||||| ||||||||||| || Sbjct 37813 ATCCAAAAGGAGTCTACTCTTCACTTGGTGTTGAGATTGAGAGGTGG 37859 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 429935895203100