Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Wickerhamia_20fluorescens_20[genbank_20GCA_5F001599155.1_202016-03-
01] 20 sequences; 13,178,500 total letters
Query= NC_007767.1
Length=132959
Score E
Sequences producing significant alignments: (Bits) Value
seq7 102 7e-17
seq1 98.7 8e-16
>seq7
Length=860703
Score = 102 bits (112), Expect = 7e-17
Identities = 161/228 (71%), Gaps = 2/228 (1%)
Strand=Plus/Plus
Query 115286 ATGCAAATTTTTGTCAAAACGCTCACGGGAAAAACCATTACCGTCGAAACGGAGTCCAGC 115345
||||||||||| ||||| || | || || || || || ||| | || |||||| |
Sbjct 37633 ATGCAAATTTTCGTCAAGACCTTAACCGGTAAGACTATCACCCTTGAGGTGGAGTCTTCC 37692
Query 115346 GACACTGTTGGACAA-GTAAAACAAAAAATTGCCGATAAAGAAGGCGTCCCCGTTGATCA 115404
||||| || ||||| || || || ||| || || ||||| | ||| ||| ||
Sbjct 37693 GACACCATT-GACAATGTCAAGTCCAAGATTCAGGACAAGGAAGGTATTCCCCCTGACCA 37751
Query 115405 GCAAAGACTTATTTATGCGGGCAAACAATTAGAAGATGACAAAACCATGGCCGATTATAA 115464
||||||| | |||| ||| || || ||||| || || | | || | | || || ||
Sbjct 37752 GCAAAGATTGATTTTTGCTGGTAAGCAATTGGAGGACGGCCGTACTCTTTCTGACTACAA 37811
Query 115465 CATTCAAAAAGAGTCTACTATACATATGGTGTTGAGATTGCGAGGAGG 115512
||| ||||| ||||||||| | || |||||||||||||| |||| ||
Sbjct 37812 CATCCAAAAGGAGTCTACTCTTCACTTGGTGTTGAGATTGAGAGGTGG 37859
>seq1
Length=2974285
Score = 98.7 bits (108), Expect = 8e-16
Identities = 160/228 (70%), Gaps = 2/228 (1%)
Strand=Plus/Minus
Query 115286 ATGCAAATTTTTGTCAAAACGCTCACGGGAAAAACCATTACCGTCGAAACGGAGTCCAGC 115345
|||||||| |||||||| || | || |||||||| |||||| | || || |||
Sbjct 1360817 ATGCAAATCTTTGTCAAGACCTTGACTGGAAAAACTATTACCCTTGAGGTTGAATCCTCT 1360758
Query 115346 GACACTGTTGGACAA-GTAAAACAAAAAATTGCCGATAAAGAAGGCGTCCCCGTTGATCA 115404
|||||| ||| |||| || || || ||| || || || || | || || ||
Sbjct 1360757 GACACTATTG-ACAAMGTCAAGTCCAAGATTCAGGACAAGGAGGGTATTCCACCAGACCA 1360699
Query 115405 GCAAAGACTTATTTATGCGGGCAAACAATTAGAAGATGACAAAACCATGGCCGATTATAA 115464
||| ||| | |||| || || || ||||||||||||| | ||| | | || || ||
Sbjct 1360698 GCAGAGATTGATTTTCGCTGGTAAGCAATTAGAAGATGGAAGAACGTTATCAGACTACAA 1360639
Query 115465 CATTCAAAAAGAGTCTACTATACATATGGTGTTGAGATTGCGAGGAGG 115512
|||||||| |||||||| | ||| | || ||||||||| |||| ||
Sbjct 1360638 TATTCAAAAGGAGTCTACGCTTCATCTTGTATTGAGATTGAGAGGTGG 1360591
Score = 98.7 bits (108), Expect = 8e-16
Identities = 160/228 (70%), Gaps = 2/228 (1%)
Strand=Plus/Minus
Query 115286 ATGCAAATTTTTGTCAAAACGCTCACGGGAAAAACCATTACCGTCGAAACGGAGTCCAGC 115345
|||||||| |||||||| || | || |||||||| |||||| | || || |||
Sbjct 1361045 ATGCAAATCTTTGTCAAGACCTTGACTGGAAAAACTATTACCCTTGAGGTTGAATCCTCT 1360986
Query 115346 GACACTGTTGGACAA-GTAAAACAAAAAATTGCCGATAAAGAAGGCGTCCCCGTTGATCA 115404
|||||| ||| |||| || || || ||| || || || || | || || ||
Sbjct 1360985 GACACTATTG-ACAAYGTCAAGTCCAAGATTCAGGACAAGGAGGGTATTCCACCAGACCA 1360927
Query 115405 GCAAAGACTTATTTATGCGGGCAAACAATTAGAAGATGACAAAACCATGGCCGATTATAA 115464
||| ||| | |||| || || || ||||||||||||| || ||| | | || || ||
Sbjct 1360926 GCAGAGATTGATTTTCGCTGGTAAGCAATTAGAAGATGGCAGAACGTTATCAGACTACAA 1360867
Query 115465 CATTCAAAAAGAGTCTACTATACATATGGTGTTGAGATTGCGAGGAGG 115512
||||| || |||||||| | ||| | || ||||||||| |||| ||
Sbjct 1360866 TATTCAGAAGGAGTCTACACTTCATCTTGTATTGAGATTGAGAGGTGG 1360819
Score = 98.7 bits (108), Expect = 8e-16
Identities = 160/228 (70%), Gaps = 2/228 (1%)
Strand=Plus/Minus
Query 115286 ATGCAAATTTTTGTCAAAACGCTCACGGGAAAAACCATTACCGTCGAAACGGAGTCCAGC 115345
|||||||| |||||||| || | || |||||||| |||||| | || || |||
Sbjct 1361273 ATGCAAATCTTTGTCAAGACCTTGACTGGAAAAACTATTACCCTTGAGGTTGAATCCTCT 1361214
Query 115346 GACACTGTTGGACAA-GTAAAACAAAAAATTGCCGATAAAGAAGGCGTCCCCGTTGATCA 115404
|||||| ||| |||| || || || ||| || || || || | || || ||
Sbjct 1361213 GACACTATTG-ACAAYGTCAAGTCCAAGATTCAGGACAAGGAGGGTATTCCACCAGACCA 1361155
Query 115405 GCAAAGACTTATTTATGCGGGCAAACAATTAGAAGATGACAAAACCATGGCCGATTATAA 115464
||| ||| | |||| || || || ||||||||||||| || ||| | | || || ||
Sbjct 1361154 GCAGAGATTGATTTTCGCTGGTAAGCAATTAGAAGATGGCAGAACGTTATCAGACTACAA 1361095
Query 115465 CATTCAAAAAGAGTCTACTATACATATGGTGTTGAGATTGCGAGGAGG 115512
||||| || |||||||| | ||| | || ||||||||| |||| ||
Sbjct 1361094 TATTCAGAAGGAGTCTACACTTCATCTTGTATTGAGATTGAGAGGTGG 1361047
Score = 95.1 bits (104), Expect = 1e-14
Identities = 160/229 (70%), Gaps = 2/229 (1%)
Strand=Plus/Minus
Query 115285 AATGCAAATTTTTGTCAAAACGCTCACGGGAAAAACCATTACCGTCGAAACGGAGTCCAG 115344
||||||||| ||||| || || | || |||||||| |||||| | || || |||
Sbjct 1361502 AATGCAAATCTTTGTAAAGACCTTGACTGGAAAAACTATTACCCTTGAGGTTGAATCCTC 1361443
Query 115345 CGACACTGTTGGACAA-GTAAAACAAAAAATTGCCGATAAAGAAGGCGTCCCCGTTGATC 115403
|||||| ||| |||| || || || ||| || || || || | || || |
Sbjct 1361442 TGACACTATTG-ACAACGTCAAGTCCAAGATTCAGGACAAGGAGGGTATTCCACCAGACC 1361384
Query 115404 AGCAAAGACTTATTTATGCGGGCAAACAATTAGAAGATGACAAAACCATGGCCGATTATA 115463
|||| ||| | |||| || || || ||||||||||||| || ||| | | || || |
Sbjct 1361383 AGCAGAGATTGATTTTCGCTGGTAAGCAATTAGAAGATGGCAGAACGTTATCAGACTACA 1361324
Query 115464 ACATTCAAAAAGAGTCTACTATACATATGGTGTTGAGATTGCGAGGAGG 115512
| ||||| || |||||||| | ||| | || ||||||||| |||| ||
Sbjct 1361323 ATATTCAGAAGGAGTCTACACTTCATCTTGTATTGAGATTGAGAGGTGG 1361275
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 425343896322400
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |