Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Wickerhamia_20fluorescens_20[genbank_20GCA_5F001599155.1_202016-03- 01] 20 sequences; 13,178,500 total letters Query= NC_008168.1 Length=104710 Score E Sequences producing significant alignments: (Bits) Value seq7 120 2e-22 seq1 98.7 7e-16 >seq7 Length=860703 Score = 120 bits (132), Expect = 2e-22 Identities = 164/229 (72%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 38090 ACCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGA 38149 |||||||||||| | ||||||||| |||||||| ||||||||| || ||||| ||||| Sbjct 37860 ACCACCTCTCAATCTCAACACCAAGTGAAGAGTAGACTCCTTTTGGATGTTGTAGTCAGA 37801 Query 38150 CAAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGG 38209 | | ||| |||| || ||||| || || ||||| || | | ||| || || | ||| Sbjct 37800 AAGAGTACGGCCGTCCTCCAATTGCTTACCAGCAAAAATCAATCTTTGCTGGTCAGGGGG 37741 Query 38210 GACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAAC 38269 | ||||| |||||| ||| || ||| ||||| | | || || | || || Sbjct 37740 AATACCTTCCTTGTCCTGAATCTTGGACTTGACATTGTCAATGGTGTCGGAAGACTCCAC 37681 Query 38270 TTCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCATG 38318 || | || ||||| ||||| || ||||| || ||||| || |||||| Sbjct 37680 CTCAAGGGTGATAGTCTTACCGGTTAAGGTCTTGACGAAAATTTGCATG 37632 >seq1 Length=2974285 Score = 98.7 bits (108), Expect = 7e-16 Identities = 159/229 (69%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 38089 TACCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAG 38148 ||||||||||||| | ||| || | |||||| || |||||||||||||||||| || | Sbjct 1360589 TACCACCTCTCAATCTCAATACAAGATGAAGCGTAGACTCCTTTTGAATATTGTAGTCTG 1360648 Query 38149 ACAAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGG 38208 | || | | | || |||||||| || || || || || | | || || || | | Sbjct 1360649 ATAACGTTCTTCCATCTTCTAATTGCTTACCAGCGAAAATCAATCTCTGCTGGTCTGGTG 1360708 Query 38209 GGACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAA 38268 | | || || |||||| ||| || ||| || || | | ||| || ||||| Sbjct 1360709 GAATACCCTCCTTGTCCTGAATCTTGGACTTGACKTTGTCAATAGTGTCAGAGGATTCAA 1360768 Query 38269 CTTCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCAT 38317 | || | ||||||||||| || |||||||| || || || || ||||| Sbjct 1360769 CCTCAAGGGTAATAGTTTTTCCAGTCAAGGTCTTGACAAAGATTTGCAT 1360817 Score = 91.5 bits (100), Expect = 1e-13 Identities = 160/233 (69%), Gaps = 8/233 (3%) Strand=Plus/Plus Query 38089 TACCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAG 38148 ||||||||||||| | ||| || | |||||| || |||||| ||||||||||| || | Sbjct 1360817 TACCACCTCTCAATCTCAATACAAGATGAAGTGTAGACTCCTTCTGAATATTGTAGTCTG 1360876 Query 38149 ACAAAACACGTT----CGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCG 38204 | | ||||| | || |||||||| || || || || || | | || || || Sbjct 1360877 ATA----ACGTTCTGCCATCTTCTAATTGCTTACCAGCGAAAATCAATCTCTGCTGGTCT 1360932 Query 38205 GAGGGGACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTT 38264 | || | || || |||||| ||| || ||| || || | | ||| || | Sbjct 1360933 GGTGGAATACCCTCCTTGTCCTGAATCTTGGACTTGACRTTGTCAATAGTGTCAGAGGAT 1360992 Query 38265 TCAACTTCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCAT 38317 ||||| || | ||||||||||| || |||||||| || || || || ||||| Sbjct 1360993 TCAACCTCAAGGGTAATAGTTTTTCCAGTCAAGGTCTTGACAAAGATTTGCAT 1361045 Score = 91.5 bits (100), Expect = 1e-13 Identities = 160/233 (69%), Gaps = 8/233 (3%) Strand=Plus/Plus Query 38089 TACCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAG 38148 ||||||||||||| | ||| || | |||||| || |||||| ||||||||||| || | Sbjct 1361045 TACCACCTCTCAATCTCAATACAAGATGAAGTGTAGACTCCTTCTGAATATTGTAGTCTG 1361104 Query 38149 ACAAAACACGTT----CGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCG 38204 | | ||||| | || |||||||| || || || || || | | || || || Sbjct 1361105 ATA----ACGTTCTGCCATCTTCTAATTGCTTACCAGCGAAAATCAATCTCTGCTGGTCT 1361160 Query 38205 GAGGGGACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTT 38264 | || | || || |||||| ||| || ||| || || | | ||| || | Sbjct 1361161 GGTGGAATACCCTCCTTGTCCTGAATCTTGGACTTGACRTTGTCAATAGTGTCAGAGGAT 1361220 Query 38265 TCAACTTCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCAT 38317 ||||| || | ||||||||||| || |||||||| || || || || ||||| Sbjct 1361221 TCAACCTCAAGGGTAATAGTTTTTCCAGTCAAGGTCTTGACAAAGATTTGCAT 1361273 Score = 89.7 bits (98), Expect = 3e-13 Identities = 160/233 (69%), Gaps = 8/233 (3%) Strand=Plus/Plus Query 38089 TACCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAG 38148 ||||||||||||| | ||| || | |||||| || |||||| ||||||||||| || | Sbjct 1361273 TACCACCTCTCAATCTCAATACAAGATGAAGTGTAGACTCCTTCTGAATATTGTAGTCTG 1361332 Query 38149 ACAAAACACGTT----CGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCG 38204 | | ||||| | || |||||||| || || || || || | | || || || Sbjct 1361333 ATA----ACGTTCTGCCATCTTCTAATTGCTTACCAGCGAAAATCAATCTCTGCTGGTCT 1361388 Query 38205 GAGGGGACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTT 38264 | || | || || |||||| ||| || ||| || || | | ||| || | Sbjct 1361389 GGTGGAATACCCTCCTTGTCCTGAATCTTGGACTTGACGTTGTCAATAGTGTCAGAGGAT 1361448 Query 38265 TCAACTTCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCAT 38317 ||||| || | ||||||||||| || |||||||| || || || || ||||| Sbjct 1361449 TCAACCTCAAGGGTAATAGTTTTTCCAGTCAAGGTCTTTACAAAGATTTGCAT 1361501 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 334947118356620