Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Wickerhamia_20fluorescens_20[genbank_20GCA_5F001599155.1_202016-03- 01] 20 sequences; 13,178,500 total letters Query= NC_008291.1 Length=198050 Score E Sequences producing significant alignments: (Bits) Value seq1 298 7e-76 seq5 111 2e-19 >seq1 Length=2974285 Score = 298 bits (330), Expect = 7e-76 Identities = 1451/2287 (63%), Gaps = 47/2287 (2%) Strand=Plus/Minus Query 61843 GTCCAATGTGAATTGAATGGGAGCGGATGCGGGTTTCGTACGTAGATAGTACATTCCCGT 61902 ||| | ||||||||| |||| ||| || || | | || | | |||||||| || || Sbjct 200897 GTCTACTGTGAATTGGATGGCAGCCGAGGCAGCCTGGGTTCTCAAGTAGTACATACCTGT 200838 Query 61903 TTTTAGACCGAGACTCCATCCGTAAAAATGCATACTCGTTAGTTTGGAATAACTCGGATC 61962 ||| || || |||| |||||||||||||| |||| ||| | ||||| Sbjct 200837 TTTGAGTCCCTTCTTCCAACCGTAAAAATGCATCGAGGTTAATTTACCCATTGTAGGATC 200778 Query 61963 TGCTATATGGATATTCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCCAT 62022 || ||||| |||| ||| || |||||| |||||||| | | |||||||||||| Sbjct 200777 CTTGATGTGGATGTTCAAAGACTGGGATTGATCAATGAAGGCGGCACGGTCTGCAGCCAT 200718 Query 62023 TTTTATAATCGTCTTT-TGTGGAATTTCCCAAATAGTTTTATA-AACTCGCTTAATATCT 62080 | ||||| || ||| || | |||||||| | || || || ||| | ||| | || Sbjct 200717 ATCAATAAT-GTGTTTCTGAGAGATTTCCCATACGGTCTTGTACAACGC-CTTGACTTCG 200660 Query 62081 TCTGGAAGGTTTGTATTC---TGAATGGATCCACCATCTGCCATAATCCTATTCTTGATC 62137 || || | ||| | | || || || || | | || || | ||||| || Sbjct 200659 TCAGGGATGTTGGGCAACAGCTGGATCGAACCGTTGTTGGAAATGATGTTGTTCTTCATG 200600 Query 62138 TCATCATTCCATAATTTTCTC---TCGGTTAAAACTCTAAGGAGATGCGGATTAACTACT 62194 || ||||| | | | | || | | | | | | || || || || | | Sbjct 200599 GAGTCGTTCCAGA---TACCCAAATCCACAAGATCGCGTAACAAATAAGGGTTGACAATT 200543 Query 62195 TGAAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCCACAGAC 62254 || ||||| |||| ||||||||| | | ||| ||||| || || ||||| | || Sbjct 200542 TGGAATTCACCAGCCAATACTCTTCTGGAGTAGATATTGGAAGTGTAGGGTTCAAAGCAC 200483 Query 62255 TCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAAACTA 62314 || || || ||||| ||||| | ||| ||||| || ||||| || || |||||||| | Sbjct 200482 TCGTTGTTACCCAATATTTGGGAAGTGGATGCCGTGGGCATGGGAGCAACCAATAACGAA 200423 Query 62315 TTTCTAAGACCGTATGTTCTG--ATTTTATCTTTTAGAGGTTCCCAATTCCAAAGATCCG 62372 ||||||| ||| ||| | | | ||| | |||| | ||||| | ||| | || Sbjct 200422 TTTCTAATACC--ATGCTTAGCCAATTTTTGCTTTAATGTGTCCCAGTCCCACAACTCAC 200365 Query 62373 ACGGTACAACNNNNNNNNNNNNNNNTTGTAGAATACCGTTACTGGCGTACGATCCTACAT 62432 || |||| | ||| || ||| || || | | Sbjct 200364 TGGGCTTTCTGTCCCAAAGATCAAACTGTAACAAACCCTTGGAGGCTGGAGACCCCTCGT 200305 Query 62433 ATGTATCGTATGGTCCTTCCTTCTCAGCTAGTTCACAACTCGCCTCTAATGCACCGTAAT 62492 | | ||||| | || || || || | ||| ||| || || | |||||||| | Sbjct 200304 AACTTTCGTAAGAACCCTCGACCTGCGCCAATTCGATACTGGCTTCCACTGCACCGTGGT 200245 Query 62493 AAATGGTTTCGAAGATCTTCTTATTTAGATCTTGCGCTTCCAGGCTATCAAATGGATAAT 62552 | ||||||||||| |||| |||| | ||| |||| | ||||| || | Sbjct 200244 ACATGGTTTCGAAAATCTGAATATTCAATTCTCTAGCTTGTTGCGAGTCAAAGGGCAATC 200185 Query 62553 TTAAGAGAATAAACGCGTCTGCTAATCCTTGAACACCAATACCGATAGGTCTATGTCTCT 62612 | || ||||| || ||||| || || || ||||| | | || ||||||| ||| Sbjct 200184 TCAATGCCATAAAAGCATCTGCCAAACCCTGCACACCCAATGCAATTGGTCTATTCCTCA 200125 Query 62613 TATTAGAGATTTCAGCTTCTGGAATAGGATAATAATTAATATCTATAATTTTATTGAGAT 62672 | ||||| ||| |||||||||| || ||| | ||| ||| || ||| | || | | Sbjct 200124 TGTTAGATCTTTTGGCTTCTGGAACGGGGTAAAAGTTACGATCAATGATTCTGTTCAAGT 200065 Query 62673 TTCTGACAATTACTTTGACCACATCCTTCAGTTTGAGAAAAT-------CAAATCGC--C 62723 | | | || || ||| || || | || || ||| | ||| | | | Sbjct 200064 TACGGGTAACAACCTTGGTAACTTCATGAAGCTTCTCAAAGTTGTACCACAAGTTGTTGC 200005 Query 62724 CATCTATT---ACAAACATGTTCAATGCAACAGATGCCAGATTACAAACGGCTACCTCAT 62780 ||| || |||||| | | ||| | |||||||| ||||| || || ||||||| Sbjct 200004 TGTCTTTTTCAACAAACGAGGGAAGTGCGATAGATGCCAAGTTACATACAGCAACCTCAT 199945 Query 62781 TAGCATCCGCATATTGTATTATCTCAGTGCAAAGATTACTACACTTGATGGTTCCTAAAT 62840 | | |||| | || ||| || | ||| | | |||||| || || | Sbjct 199944 CTGGCGAGGAGTATTCGACAATTTCACAACACAAATTGGAAGATTTGATGACACCCAAGT 199885 Query 62841 TTTGTTGATTACTCTTTTTGTTACACGCATCCTTATAAAGAATGAATGGAGTACCAGTTT 62900 | | ||||||| | ||||| || || ||||| || || | |||||||| ||||| |||| Sbjct 199884 TCTTTTGATTAGTTTTTTTATTGCATGCATCTTTGTACAACATGAATGGGGTACCGGTTT 199825 Query 62901 CAATCTGAGATTCTATAATCGCTTTCCAGACGACTCGAGCCTTTATTATAGATTTGTATC 62960 | | || | || | ||| || | ||| | ||||||| || | ||| | | Sbjct 199824 CGGTTTGCGCCTCCAAAATGGCGTACCATAATTTCTGAGCCTTGATAGTC--TTTCTTCC 199767 Query 62961 TC--TTTTCTCTTTCGTATAGTGTATACAATCGTTCGAACTCGTCTCCCCAAACATTGTC 63018 | ||||| | |||||| |||||| || ||||| || || |||||| | Sbjct 199766 ACGGTTTTCACGTTCGTACTTCTCGTACAATGCCTCAAACTCATCACCGTAAACATCGGA 199707 Query 63019 CAGTCCAGGACATTCATCCGGACACATCAACGACCACTCTCCGTCATCCTTCACTCGTTT 63078 || || | |||| ||| | | ||| | |||||| | | | || |||| || Sbjct 199706 CAAACCTTGGGCCTCATTAGGAGAGAACAAGGTCCACTCAGCATTCTGCTCAACTCTCTT 199647 Query 63079 CATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATGTTCCTCGTT 63138 |||||| | ||||||||||| | ||| || | |||||| | || ||| || || Sbjct 199646 CATAAACAAGTCAGGAATCCACAATGCTGGGAACAAATCTCTTGCCCTCATTTCTTCCTT 199587 Query 63139 TCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTA 63198 || ||||||| ||| ||||| ||| | | ||||| | ||||| |||||||| || Sbjct 199586 ACCATGATTCTTTCTAATATCGATGAAATCAAAGATATCCGCGTGCCATGGTTCCAAATA 199527 Query 63199 TATGGCCATAACTCCAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATT 63258 || ||| | | || || | || || || |||||||| | ||| | ||| |||||||| Sbjct 199526 TAAGGCAAATGCACCGGGTCTCTTATTACCACCCTGATCCACGTAACGAGCAGTGTTATT 199467 Query 63259 ATAAACTCTCAACATTGGAATAATACCATTGGATGTACCATTGGTCCCTGAGATATAGCT 63318 ||||||| | ||| ||||| |||||||| || ||||| ||||| || | || ||| Sbjct 199466 GAAAACTCTAACCATAGGAATGATACCATTAGAGGTACCGTTGGTACCAGCAATGTAGGC 199407 Query 63319 TCCACTGGCACGAATATTACTAATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAA 63378 ||| | | ||||| || || || ||| || || || || | || || || || Sbjct 199406 ACCAGTCGAGCGAATGTTGTGTATGTGTAAACCAATACCTCCAGCACTCTTGGAAATCAA 199347 Query 63379 TGCGCATCGTTTTAACGTATCATAGATGCCCTCTATACTATCATCCATCATGTTAAGTAG 63438 || ||| || || |||||||| || || || ||| |||||| |||| || | Sbjct 199346 GGCACATGTCTTCAAGGTATCATAAATACCGTCAATAGAATCATCTTTCATAGCAATCAA 199287 Query 63439 AAAACAGCTAGACATTTG-GTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGT 63497 ||| || |||||||| | | | | || || |||||||| || ||||| || ||| Sbjct 199286 AAAGCACGAGGACATTTGAGGGTTGGGT-GTACCAGCATTAAACAAAGTAGGCGAGCCGT 199228 Query 63498 GAGTAAACCATTTTTCAGAAAGTAGATTGTACGTCTCAATAGCTGAGTCTATATCCCATT 63557 | ||||| | | | || | | |||||| || ||||| || | || || Sbjct 199227 GGGTAAAGTGTCTCTGGGACATCATATTGTAAGTTTCAATGACTCTGGGAATGTCGTCAC 199168 Query 63558 GATGAATTCCTACTGCGACACGCATTAACATGTGCTGAGGTCTTTCAACGATCTTGTTGT 63617 |||||| || | || || | ||| | | ||||||||||||||| ||| ||| | Sbjct 199167 CATGAATACCAATGGCAACTCTCATAATTAAGTGCTGAGGTCTTTCTGCGACTTTGCCAT 199108 Query 63618 TTATTTTCAACAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGT 63677 | ||| | || | ||| ||| | || |||||||| |||||||| || ||||| ||| | Sbjct 199107 TAATTCTTAAAAGGTAAGATCTCTCTAAAGTTTTGAAACCAAAGTAATTGTAGTTAAAAT 199048 Query 63678 CTCGTTCGTAAATAATAACCGAGTTGAGTTTATCCTTATATTTGTTAACTACATC-CATG 63736 | || || | | ||| | |||| | | ||| || ||| ||| | || ||| Sbjct 199047 CACGATCAAATACAATTGCAGAGTCCAAGTCATCAGCGTACTTGGTAATAATGTCGTATG 198988 Query 63737 GTAATACT-TGAAATAATAGGAAAATGTTTCCCATTTTTAGGATTGACATAGTTGAATAA 63795 | | || || || ||||| | || ||| |||| || || ||||||| | || Sbjct 198987 TT--TCCTGGGAGATCATAGGGGAGTGCAAACCAGTTTTGGGGTTAACATAGTCATACAA 198930 Query 63796 ATCCT--CCATCACTTCACTAAATAGtttttttGTTTCTTTGTGTAGATTTGATACGGCT 63853 |||| | | ||||| | ||| | ||| | |||| |||||| | || || || || Sbjct 198929 CTCCTTACTAACACTTGA--AAACTGCTTTGTAGTTTGTTTGTGCAAGTTAGAAACAGCA 198872 Query 63854 ATTCTAGCGGCTAGAATGGCATAATCCGGATGTTGTGTAGTACAAGT-GGCTGCTATTTC 63912 ||||| || || | || |||||||| || || ||||| || || || || | || Sbjct 198871 ATTCTTGCTGCCAAGATAGCATAATCTGGGTGGATAGTAGT-CATGTATGCGGCAGTCTC 198813 Query 63913 GGCTGCCAGAGTGTCCAATTCTACCGTTGTTACACCATTATATATTCCTTGGATAACCTT 63972 ||||| | | || | || | || || ||||| | || | ||| ||||| | Sbjct 198812 TGCTGCTAAGTTATCAAGCTCAATAGTGGTAACACCTTGGTACACACCTGAAATAACTCT 198753 Query 63973 CATAGCTATTTTAATAGGATCTATATGATCAGTGTTTAAGCCATAACATAAT-TTTCTAA 64031 || |||| | | ||| | |||| | || |||||||||||||||| | | || Sbjct 198752 TTGAGTGATTTGCACGGCATCAACGTGATTGGAGTCTAAGCCATAACATAATCTCTGTAC 198693 Query 64032 TACGAGATGTGATTTTATCAAACATGACATTTTCCTTGTATCCATTTCGTTTAATGACAA 64091 | | || || ||||||||||| |||| || ||| |||| || ||||| ||| Sbjct 198692 T-CTAGCAGTAATTTTATCAAAACGGACAGGCTCTTTGCGACCATGTCTTTTAACCACAT 198634 Query 64092 ACATTTT 64098 ||||||| Sbjct 198633 ACATTTT 198627 Score = 232 bits (256), Expect = 8e-56 Identities = 598/903 (66%), Gaps = 15/903 (2%) Strand=Plus/Minus Query 32349 TCTTGAGACATAACTCCCATTTTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTT 32408 |||| || |||||| || |||||||| |||| || | ||||||||||| || || Sbjct 233338 TCTT-AGCCATAACACCAGCCTTTTGGTAGTCACTAACTCTCTTTTCGAAAAAGTTGGTC 233280 Query 32409 TTACCTTCTAATGATATATTTTCCATGAAATCGAATGGATTGGTAACATTATAAAttttt 32468 || ||| | || || || |||||||| || || || ||||| |||||||| |||| ||| Sbjct 233279 TTTCCTGCCAACGAAATGTTTTCCATAAAGTCAAAGGGATTAGTAACATTGTAAACCTTT 233220 Query 32469 ttAAATCCCAATTCAGAAATCAATCTATCTGCGACAAATTCTATATATGTTTTCATCATT 32528 | || ||| | || ||||| || || ||||| || | || ||||| | Sbjct 233219 TCGTTGCCTAATGCGACAAGTAATCTGTCGGCAACAAACTCCACGTACTGGCACATCAAT 233160 Query 32529 TCACAATTCATTCCTATAAGTTTAACTGGAAGAGCCACAGTAAGAAATTCTTGTTCAATA 32588 | ||| ||||| || | | || || | ||| |||| | ||| || | ||||||| Sbjct 233159 TTACAGTTCATACCCAACAACGAAATAGGCAAAGCATCAGTGAAAAACTCCTTTTCAATA 233100 Query 32589 GAGACCGCGTCTGTTATAATAGATCTT-ACTGTTTCTTCACTCGGTGGATACAATAAATG 32647 | || || ||||| ||||| ||| || | | || ||| | || || Sbjct 233099 GCAACGGCCTCTGTGATAATCT-TCTCGACAATAGCAGCATCGGGTCTGTTTTGCAAGTG 233041 Query 32648 TTTAAACATCAAACATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTT 32707 || | ||| || || |||||| ||| | |||||| || | | ||||| ||||| Sbjct 233040 GGAGAATAACAAGCAAGCAAAATCGGTGTGCAAACCCTCATCACGGCAGATTAACTCGTT 232981 Query 32708 GGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGA 32767 ||| || || | || ||||| | ||| | ||| || | |||||| ||||| ||||| || Sbjct 232980 GGAGAAAGTCAAACCAGGCATCAAGCCTCTCTTCTTCAACCAAAAGATGGATGCAAACGA 232921 Query 32768 TCCAGAAAAGAAAATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATAACCGGC 32827 |||| |||||||| ||||| || || ||||| |||| ||| | || ||| | ||| Sbjct 232920 TCCACTGAAGAAAATACCTTCAACAGCAGCAAATGCAACAAGACGTTCGCCAAATAAGGC 232861 Query 32828 GCTGTCATGT---ATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATTGT 32884 ||||| ||||| | |||||| || ||||||||||| | ||||| || || Sbjct 232860 CTCGTCATCACTGATCCAGCGTAAAGCCCAGTCAGCCTTCTTTTTGATGCAAGGAATAGT 232801 Query 32885 CTCTATAGCATTAAAGAGATAGtttttttCATTACTATCTTTAACATATGTATCAATCAA 32944 ||| |||||||| || | | ||| | || || || || | ||| || || ||||| Sbjct 232800 CTCAATAGCATTGAATAAAAAGTCTGCCTCCTTGGGGTCCTTGATATAGGTGTCGATCAA 232741 Query 32945 AAGACTATACATTTCCGAATGAATGTTTTCAATGGCCATTTGAAATCCGTAGAAGCATCT 33004 | || | || || || || ||||| || ||||| || ||||| |||||| | Sbjct 232740 CAAGGAGTAGGTCTCTGAGTGGATATTTTCCATCATGATTTGGAAACCGTAAAAGCATTT 232681 Query 33005 AGCCTCGGTAATCTGTACTTCTGTACAAAATCGTTCT--GCTAAATTTTCATTCACTATT 33062 || || | |||||| || || | | | || ||||| | || || || || || || Sbjct 232680 GGCTTCTGGAATCTGAACCTCGGCAGAGAA--GTTCTCCACCAAGTTCTCGTTAACAATA 232623 Query 33063 CCGTCACTGGCTGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTCTGGTGTT 33122 || || || || ||||| ||||| | | | || || | |||| || ||| Sbjct 232622 CCATCGGAAGCAGCGAAAAATGCCAAAATACGGGAAATGAAGAAACGCTCGT-TGTCGTT 232564 Query 33123 ----AGTTTATTCCAATCATTGATATCTTTAGATATATCCACTTCTTCCACTGTCCAAAA 33178 | || ||||| |||| | ||||| | ||| | ||| || | |||||||| Sbjct 232563 CAAGCGATTGTTCCAGTCATGAGTGTCTTTTCCCAAATCGATTTCCTCTGCAGTCCAAAA 232504 Query 33179 TGATGCCTCTGCCTTTTTATACATATTCCAGATGTCATGATATTGAATTGGAAAAATAAC 33238 ||||| ||||| || || ||||| | ||| || || || |||| ||| || |||| ||| Sbjct 232503 AGATGCTTCTGCTTTCTTGTACATTTGCCAAATCTCGTGGTATTTAATAGGGAAAAGAAC 232444 Query 33239 AAA 33241 ||| Sbjct 232443 AAA 232441 >seq5 Length=1501106 Score = 111 bits (122), Expect = 2e-19 Identities = 353/541 (65%), Gaps = 6/541 (1%) Strand=Plus/Minus Query 62823 ACTTGATGGTTCCTAAATTTTGTTGATTACTCTTTTTGTTACACGCATCCTTATAAAGAA 62882 |||| || || |||| ||||| || || ||| |||||| ||||| ||||| | | Sbjct 762059 ACTTAATTGTCCCTAGATTTTTCTGGTTTGATTTTGAGTTACATGCATCTTTATATAACA 762000 Query 62883 TGAATGGAGTACCAGTTTCAATCTGAGATTCTATAATCGCTTTCCAGACGACTCGAGCCT 62942 || | || || ||||| | || ||||||| ||| ||| ||| | | |||| Sbjct 761999 TGTACGGCCCTCCTGTTTCTGTTTGGGATTCTAAAATGGCTAGCCATAATTTCTGCGCCT 761940 Query 62943 TTATTATAGATTTGTATCTCTTTTCTCTTTCGTATAGT--GTATACAATCGTTCGAACTC 63000 | ||| || |||| || ||| || || | ||||| | | | | || || Sbjct 761939 TAATTGTAACTTTGGCTCGACCTTCAGACTCATAGGATTCGTATA-ACTTGA-CAAAGTC 761882 Query 63001 GTCTCCCCAAACATTGTCCAGTCCAGGACATTCATCCGGACACATCAACGACCACTCTCC 63060 ||||| || || ||||| |||||| |||||| || | | ||| ||||| ||| Sbjct 761881 ATCTCCGTAACAATCGTCCAACCCAGGAGCTTCATCTGGTGAAAACAATGACCATTCTAG 761822 Query 63061 GTCATCCTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCT 63120 | | ||| |||| ||||| || | ||| | ||||| || | ||||| |||||| Sbjct 761821 ATTTTGCTTAACTCTCTTCATGAATAAATCGGATATCCATAGTCCATAAAATAAATCTCT 761762 Query 63121 GGTTCTATGTTCCTCGTTTCCTGT-ATTCTTTTTAAGATCGAGGAACGCCATAATATCAG 63179 ||||| || || |||| | || ||| || || | || ||| | | | |||||| Sbjct 761761 GGTTC-GCATTTCTTGTTTGCCGTGATTTTTCTTTAAATTGAGTACATCGAATATATCAC 761703 Query 63180 AATGCCACGGTTCCAAGTATATGGCCATAACTCCAGGCCGTTTGTTTCCTCCCTGATCTA 63239 ||||||| || || | ||||| || | | | || || | | ||||| ||||| | Sbjct 761702 AATGCCATGGCTCAATGTATACTGCAAAAGCACCTGGTCTCCGACTACCTCCTTGATCAA 761643 Query 63240 TGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCATTGGATGTACCAT 63299 ||||| || || | ||| | |||| |||||| ||||| || ||| | ||||| |||| Sbjct 761642 CATATCTTGCAGTTTCATTGAATACTCGCAACATGGGAATTATTCCAGTTGATGTTCCAT 761583 Query 63300 TGGTCCCTGAGATATAGCTTCCACTGGCACGAATATTACTAATTGATAGACCTATTCCCC 63359 | | | | ||| ||| |||| | | |||| |||| ||| || |||||||| | Sbjct 761582 TTGAGCTAGCGATGTAGGATCCATTACCCCGAACATTATGAATATGTAAGCCTATTCCAC 761523 Query 63360 C 63360 | Sbjct 761522 C 761522 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 633631841592000