Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Wickerhamia_20fluorescens_20[genbank_20GCA_5F001599155.1_202016-03-
01] 20 sequences; 13,178,500 total letters
Query= NC_008293.1
Length=135454
Score E
Sequences producing significant alignments: (Bits) Value
seq1 113 4e-20
>seq1
Length=2974285
Score = 113 bits (124), Expect = 4e-20
Identities = 163/228 (71%), Gaps = 2/228 (1%)
Strand=Plus/Minus
Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058
|||||||| ||||| ||||| ||||| || ||| | || || | || || || || |||
Sbjct 1360817 ATGCAAATCTTTGTCAAGACCTTGACTGGAAAAACTATTACCCTTGAGGTTGAATCCTCT 1360758
Query 25059 GACACTATCGAGTCACTGAAG-CAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCA 25117
|||||||| || | ||| | || | ||| ||||| || || |||||||| |||||
Sbjct 1360757 GACACTATTGACAAMGTCAAGTCCAAGATTCAG-GACAAGGAGGGTATTCCACCAGACCA 1360699
Query 25118 ACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAA 25177
||| | | ||||| || || || ||||||||||||| | || | || |||||
Sbjct 1360698 GCAGAGATTGATTTTCGCTGGTAAGCAATTAGAAGATGGAAGAACGTTATCAGACTACAA 1360639
Query 25178 TATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGG 25225
||||||||| || || ||||| ||| | || | || | ||||| ||
Sbjct 1360638 TATTCAAAAGGAGTCTACGCTTCATCTTGTATTGAGATTGAGAGGTGG 1360591
Score = 113 bits (124), Expect = 4e-20
Identities = 165/231 (71%), Gaps = 2/231 (1%)
Strand=Plus/Minus
Query 24996 ACAATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCG 25055
||||||||||| ||||||||||| ||||| || ||| | || || | || || || ||
Sbjct 1361504 ACAATGCAAATCTTTGTAAAGACCTTGACTGGAAAAACTATTACCCTTGAGGTTGAATCC 1361445
Query 25056 TCTGACACTATCGAGTCACTGAAG-CAAAAAATCACTGACAAAGAAGGGATTCCACCTGA 25114
||||||||||| || | ||| | || | ||| ||||| || || |||||||| ||
Sbjct 1361444 TCTGACACTATTGACAACGTCAAGTCCAAGATTCAG-GACAAGGAGGGTATTCCACCAGA 1361386
Query 25115 CCAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTA 25174
||| ||| | | ||||| || || || ||||||||||||| | || | || ||
Sbjct 1361385 CCAGCAGAGATTGATTTTCGCTGGTAAGCAATTAGAAGATGGCAGAACGTTATCAGACTA 1361326
Query 25175 CAATATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGG 25225
||||||||| || || || || || ||| | || | || | ||||| ||
Sbjct 1361325 CAATATTCAGAAGGAGTCTACACTTCATCTTGTATTGAGATTGAGAGGTGG 1361275
Score = 102 bits (112), Expect = 7e-17
Identities = 161/228 (71%), Gaps = 2/228 (1%)
Strand=Plus/Minus
Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058
|||||||| ||||| ||||| ||||| || ||| | || || | || || || || |||
Sbjct 1361045 ATGCAAATCTTTGTCAAGACCTTGACTGGAAAAACTATTACCCTTGAGGTTGAATCCTCT 1360986
Query 25059 GACACTATCGAGTCACTGAAG-CAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCA 25117
|||||||| || | ||| | || | ||| ||||| || || |||||||| |||||
Sbjct 1360985 GACACTATTGACAAYGTCAAGTCCAAGATTCAG-GACAAGGAGGGTATTCCACCAGACCA 1360927
Query 25118 ACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAA 25177
||| | | ||||| || || || ||||||||||||| | || | || |||||
Sbjct 1360926 GCAGAGATTGATTTTCGCTGGTAAGCAATTAGAAGATGGCAGAACGTTATCAGACTACAA 1360867
Query 25178 TATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGG 25225
|||||| || || || || || ||| | || | || | ||||| ||
Sbjct 1360866 TATTCAGAAGGAGTCTACACTTCATCTTGTATTGAGATTGAGAGGTGG 1360819
Score = 102 bits (112), Expect = 7e-17
Identities = 161/228 (71%), Gaps = 2/228 (1%)
Strand=Plus/Minus
Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058
|||||||| ||||| ||||| ||||| || ||| | || || | || || || || |||
Sbjct 1361273 ATGCAAATCTTTGTCAAGACCTTGACTGGAAAAACTATTACCCTTGAGGTTGAATCCTCT 1361214
Query 25059 GACACTATCGAGTCACTGAAG-CAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCA 25117
|||||||| || | ||| | || | ||| ||||| || || |||||||| |||||
Sbjct 1361213 GACACTATTGACAAYGTCAAGTCCAAGATTCAG-GACAAGGAGGGTATTCCACCAGACCA 1361155
Query 25118 ACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAA 25177
||| | | ||||| || || || ||||||||||||| | || | || |||||
Sbjct 1361154 GCAGAGATTGATTTTCGCTGGTAAGCAATTAGAAGATGGCAGAACGTTATCAGACTACAA 1361095
Query 25178 TATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGG 25225
|||||| || || || || || ||| | || | || | ||||| ||
Sbjct 1361094 TATTCAGAAGGAGTCTACACTTCATCTTGTATTGAGATTGAGAGGTGG 1361047
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 433327894376300
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |