Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Wickerhamia_20fluorescens_20[genbank_20GCA_5F001599155.1_202016-03- 01] 20 sequences; 13,178,500 total letters Query= NC_008293.1 Length=135454 Score E Sequences producing significant alignments: (Bits) Value seq1 113 4e-20 >seq1 Length=2974285 Score = 113 bits (124), Expect = 4e-20 Identities = 163/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 |||||||| ||||| ||||| ||||| || ||| | || || | || || || || ||| Sbjct 1360817 ATGCAAATCTTTGTCAAGACCTTGACTGGAAAAACTATTACCCTTGAGGTTGAATCCTCT 1360758 Query 25059 GACACTATCGAGTCACTGAAG-CAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCA 25117 |||||||| || | ||| | || | ||| ||||| || || |||||||| ||||| Sbjct 1360757 GACACTATTGACAAMGTCAAGTCCAAGATTCAG-GACAAGGAGGGTATTCCACCAGACCA 1360699 Query 25118 ACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAA 25177 ||| | | ||||| || || || ||||||||||||| | || | || ||||| Sbjct 1360698 GCAGAGATTGATTTTCGCTGGTAAGCAATTAGAAGATGGAAGAACGTTATCAGACTACAA 1360639 Query 25178 TATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGG 25225 ||||||||| || || ||||| ||| | || | || | ||||| || Sbjct 1360638 TATTCAAAAGGAGTCTACGCTTCATCTTGTATTGAGATTGAGAGGTGG 1360591 Score = 113 bits (124), Expect = 4e-20 Identities = 165/231 (71%), Gaps = 2/231 (1%) Strand=Plus/Minus Query 24996 ACAATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCG 25055 ||||||||||| ||||||||||| ||||| || ||| | || || | || || || || Sbjct 1361504 ACAATGCAAATCTTTGTAAAGACCTTGACTGGAAAAACTATTACCCTTGAGGTTGAATCC 1361445 Query 25056 TCTGACACTATCGAGTCACTGAAG-CAAAAAATCACTGACAAAGAAGGGATTCCACCTGA 25114 ||||||||||| || | ||| | || | ||| ||||| || || |||||||| || Sbjct 1361444 TCTGACACTATTGACAACGTCAAGTCCAAGATTCAG-GACAAGGAGGGTATTCCACCAGA 1361386 Query 25115 CCAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTA 25174 ||| ||| | | ||||| || || || ||||||||||||| | || | || || Sbjct 1361385 CCAGCAGAGATTGATTTTCGCTGGTAAGCAATTAGAAGATGGCAGAACGTTATCAGACTA 1361326 Query 25175 CAATATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGG 25225 ||||||||| || || || || || ||| | || | || | ||||| || Sbjct 1361325 CAATATTCAGAAGGAGTCTACACTTCATCTTGTATTGAGATTGAGAGGTGG 1361275 Score = 102 bits (112), Expect = 7e-17 Identities = 161/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 |||||||| ||||| ||||| ||||| || ||| | || || | || || || || ||| Sbjct 1361045 ATGCAAATCTTTGTCAAGACCTTGACTGGAAAAACTATTACCCTTGAGGTTGAATCCTCT 1360986 Query 25059 GACACTATCGAGTCACTGAAG-CAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCA 25117 |||||||| || | ||| | || | ||| ||||| || || |||||||| ||||| Sbjct 1360985 GACACTATTGACAAYGTCAAGTCCAAGATTCAG-GACAAGGAGGGTATTCCACCAGACCA 1360927 Query 25118 ACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAA 25177 ||| | | ||||| || || || ||||||||||||| | || | || ||||| Sbjct 1360926 GCAGAGATTGATTTTCGCTGGTAAGCAATTAGAAGATGGCAGAACGTTATCAGACTACAA 1360867 Query 25178 TATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGG 25225 |||||| || || || || || ||| | || | || | ||||| || Sbjct 1360866 TATTCAGAAGGAGTCTACACTTCATCTTGTATTGAGATTGAGAGGTGG 1360819 Score = 102 bits (112), Expect = 7e-17 Identities = 161/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 |||||||| ||||| ||||| ||||| || ||| | || || | || || || || ||| Sbjct 1361273 ATGCAAATCTTTGTCAAGACCTTGACTGGAAAAACTATTACCCTTGAGGTTGAATCCTCT 1361214 Query 25059 GACACTATCGAGTCACTGAAG-CAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCA 25117 |||||||| || | ||| | || | ||| ||||| || || |||||||| ||||| Sbjct 1361213 GACACTATTGACAAYGTCAAGTCCAAGATTCAG-GACAAGGAGGGTATTCCACCAGACCA 1361155 Query 25118 ACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAA 25177 ||| | | ||||| || || || ||||||||||||| | || | || ||||| Sbjct 1361154 GCAGAGATTGATTTTCGCTGGTAAGCAATTAGAAGATGGCAGAACGTTATCAGACTACAA 1361095 Query 25178 TATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGG 25225 |||||| || || || || || ||| | || | || | ||||| || Sbjct 1361094 TATTCAGAAGGAGTCTACACTTCATCTTGTATTGAGATTGAGAGGTGG 1361047 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 433327894376300