Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Wickerhamia_20fluorescens_20[genbank_20GCA_5F001599155.1_202016-03- 01] 20 sequences; 13,178,500 total letters Query= NC_008518.1 Length=174059 Score E Sequences producing significant alignments: (Bits) Value seq1 271 8e-68 >seq1 Length=2974285 Score = 271 bits (300), Expect = 8e-68 Identities = 623/923 (67%), Gaps = 19/923 (2%) Strand=Plus/Minus Query 92783 TCTTATTCATAACACCACATTTTTGGTATTCCCCAACttttttttCAAAGAAATTTGTCT 92842 ||||| |||||||||| |||||||| || | |||| | ||||| || || || |||| Sbjct 233338 TCTTAGCCATAACACCAGCCTTTTGGTAGTCACTAACTCTCTTTTCGAAAAAGTTGGTCT 233279 Query 92843 TTCCTTCCAAAGATATCGAATTCACTAGTG---ATTGGATTCTTGGCGTTATAATACTTT 92899 ||||| |||| || || | ||| || | | ||||| | | || ||| |||| Sbjct 233278 TTCCTGCCAACGAAAT-GTTTTCCATAAAGTCAAAGGGATTAGTAACATTGTAAACCTTT 233220 Query 92900 TCACCGATCAACTCGTACAA-TAATCTATCAGCTACAAATTCTATGTACTGAGACATCAA 92958 || | || || |||| |||||| || || ||||| || | |||||| ||||||| Sbjct 233219 TCGTTGCCTAATGCG-ACAAGTAATCTGTCGGCAACAAACTCCACGTACTGGCACATCAA 233161 Query 92959 ATCACAATTCATTCCTAGAAGACGTAC-AGGTAGAGCGTCGGTCAAGAAATCTTTCTCGA 93017 | ||| ||||| || | | ||| | ||| | ||| || || || || || || || | Sbjct 233160 TTTACAGTTCATACCCAACA-ACGAAATAGGCAAAGCATCAGTGAAAAACTCCTTTTCAA 233102 Query 93018 TTACAACGGCTTCTTTCAAGAT-TTCT--ATTACTCTACTATTTGGTGGTTTTTGTACGA 93074 | ||||||| ||| | | || |||| | | | || ||| ||||| | | Sbjct 233101 TAGCAACGGCCTCTGTGATAATCTTCTCGACAATAGCAGCATCGGGTCTGTTTTGCAAGT 233042 Query 93075 CATAATTGTACATTAAGCACGCAAAGTCGGTATGTAAACCTTCGTCTCGTGATATCAACT 93134 | | | | ||||| ||||| ||||| || ||||| || || || | || |||| Sbjct 233041 GGGA---GAATAACAAGCAAGCAAAATCGGTGTGCAAACCCTCATCACGGCAGATTAACT 232985 Query 93135 CATTGCTGAATGTTAAACCTGGTAACAGTCCTCGTTTCTTGAGCCAAAATATTGAAGCAA 93194 | ||| ||| || ||||| || | || |||| ||||| | |||||| || || |||| Sbjct 232984 CGTTGGAGAAAGTCAAACCAGGCATCAAGCCTCTCTTCTTCAACCAAAAGATGGATGCAA 232925 Query 93195 AACTACCAGaaaaaaaTATACCTTCCACGGCTGCAAATGCCACAATACGTTCGGCAAAAT 93254 | ||| || || |||||||| || || |||||||| |||| ||||||| |||| Sbjct 232924 ACGATCCACTGAAGAAAATACCTTCAACAGCAGCAAATGCAACAAGACGTTCGCCAAATA 232865 Query 93255 TTGCGGAATTACTGCTGATCCATTTTAAAGCCCAATCGGCTTTTTTCTTAATACAAGGTA 93314 || | | |||||||| ||||||||| || || || || || || ||||| | Sbjct 232864 AGGCCTCGTCATCACTGATCCAGCGTAAAGCCCAGTCAGCCTTCTTTTTGATGCAAGGAA 232805 Query 93315 GTGTTTCGATAGCGTTAAATAGGTAATCTCGCTCGTCCGAATCTCGTATGTATGTATCGA 93374 || || ||||| || |||| | ||| ||| | | || || || || |||| Sbjct 232804 TAGTCTCAATAGCATTGAATAAAAAGTCTGCCTCCTTGGGGTCCTTGATATAGGTGTCGA 232745 Query 93375 TTAACAGAGAATACATTTCAGAATGGACATTCTCCATTGCAATTTGGAATCCGTAGAAAC 93434 | |||| || || | || || |||| ||| ||||| |||||||| ||||| || | Sbjct 232744 TCAACAAGGAGTAGGTCTCTGAGTGGATATTTTCCATCATGATTTGGAAACCGTAAAAGC 232685 Query 93435 ATCTAGCTTCCGTGATCTGCACTTCTTGAGAAAATCTCTCTACGAGATTTTCATTGACTA 93494 || | ||||| | ||||| || || ||| || |||| || | || || || || | Sbjct 232684 ATTTGGCTTCTGGAATCTGAACCTCGGCAGAGAAGTTCTCCACCAAGTTCTCGTTAACAA 232625 Query 93495 TACCATCGGATGCTGCaaaaaaaGCCAATATATGCTTTATAAAATGTTTCTCATCATC-T 93553 |||||||||| || || ||||| ||||| ||| | || || ||| | || | Sbjct 232624 TACCATCGGAAGCAGCGAAAAATGCCAAAATACGGGAAATGAAGAAACGCTCGTTGTCGT 232565 Query 93554 TTAAGC--TTATCCCAATC-GGATAGATCTTTTGAAAGATCGACTTCTTCGACAGTCCAA 93610 | |||| || | ||| || || | |||||| | ||||| ||| || |||||||| Sbjct 232564 TCAAGCGATTGTTCCAGTCATGAGTG-TCTTTTCCCAAATCGATTTCCTCTGCAGTCCAA 232506 Query 93611 AACGATGCTTCTGCTTTTTTGTACATATCCCATATGTCTTGATATTGAATTGGAAATATG 93670 || |||||||||||||| |||||||| | ||| || || || |||| ||| || || | Sbjct 232505 AAAGATGCTTCTGCTTTCTTGTACATTTGCCAAATCTCGTGGTATTTAATAGGGAAAAGA 232446 Query 93671 ACAAAACGATTAGGGTTATCTTT 93693 ||||||||| || ||| || || Sbjct 232445 ACAAAACGACGAGTGTTCTCCTT 232423 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 556860660784800