Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Wickerhamia_20fluorescens_20[genbank_20GCA_5F001599155.1_202016-03-
01] 20 sequences; 13,178,500 total letters
Query= NC_008518.1
Length=174059
Score E
Sequences producing significant alignments: (Bits) Value
seq1 271 8e-68
>seq1
Length=2974285
Score = 271 bits (300), Expect = 8e-68
Identities = 623/923 (67%), Gaps = 19/923 (2%)
Strand=Plus/Minus
Query 92783 TCTTATTCATAACACCACATTTTTGGTATTCCCCAACttttttttCAAAGAAATTTGTCT 92842
||||| |||||||||| |||||||| || | |||| | ||||| || || || ||||
Sbjct 233338 TCTTAGCCATAACACCAGCCTTTTGGTAGTCACTAACTCTCTTTTCGAAAAAGTTGGTCT 233279
Query 92843 TTCCTTCCAAAGATATCGAATTCACTAGTG---ATTGGATTCTTGGCGTTATAATACTTT 92899
||||| |||| || || | ||| || | | ||||| | | || ||| ||||
Sbjct 233278 TTCCTGCCAACGAAAT-GTTTTCCATAAAGTCAAAGGGATTAGTAACATTGTAAACCTTT 233220
Query 92900 TCACCGATCAACTCGTACAA-TAATCTATCAGCTACAAATTCTATGTACTGAGACATCAA 92958
|| | || || |||| |||||| || || ||||| || | |||||| |||||||
Sbjct 233219 TCGTTGCCTAATGCG-ACAAGTAATCTGTCGGCAACAAACTCCACGTACTGGCACATCAA 233161
Query 92959 ATCACAATTCATTCCTAGAAGACGTAC-AGGTAGAGCGTCGGTCAAGAAATCTTTCTCGA 93017
| ||| ||||| || | | ||| | ||| | ||| || || || || || || || |
Sbjct 233160 TTTACAGTTCATACCCAACA-ACGAAATAGGCAAAGCATCAGTGAAAAACTCCTTTTCAA 233102
Query 93018 TTACAACGGCTTCTTTCAAGAT-TTCT--ATTACTCTACTATTTGGTGGTTTTTGTACGA 93074
| ||||||| ||| | | || |||| | | | || ||| ||||| | |
Sbjct 233101 TAGCAACGGCCTCTGTGATAATCTTCTCGACAATAGCAGCATCGGGTCTGTTTTGCAAGT 233042
Query 93075 CATAATTGTACATTAAGCACGCAAAGTCGGTATGTAAACCTTCGTCTCGTGATATCAACT 93134
| | | | ||||| ||||| ||||| || ||||| || || || | || ||||
Sbjct 233041 GGGA---GAATAACAAGCAAGCAAAATCGGTGTGCAAACCCTCATCACGGCAGATTAACT 232985
Query 93135 CATTGCTGAATGTTAAACCTGGTAACAGTCCTCGTTTCTTGAGCCAAAATATTGAAGCAA 93194
| ||| ||| || ||||| || | || |||| ||||| | |||||| || || ||||
Sbjct 232984 CGTTGGAGAAAGTCAAACCAGGCATCAAGCCTCTCTTCTTCAACCAAAAGATGGATGCAA 232925
Query 93195 AACTACCAGaaaaaaaTATACCTTCCACGGCTGCAAATGCCACAATACGTTCGGCAAAAT 93254
| ||| || || |||||||| || || |||||||| |||| ||||||| ||||
Sbjct 232924 ACGATCCACTGAAGAAAATACCTTCAACAGCAGCAAATGCAACAAGACGTTCGCCAAATA 232865
Query 93255 TTGCGGAATTACTGCTGATCCATTTTAAAGCCCAATCGGCTTTTTTCTTAATACAAGGTA 93314
|| | | |||||||| ||||||||| || || || || || || ||||| |
Sbjct 232864 AGGCCTCGTCATCACTGATCCAGCGTAAAGCCCAGTCAGCCTTCTTTTTGATGCAAGGAA 232805
Query 93315 GTGTTTCGATAGCGTTAAATAGGTAATCTCGCTCGTCCGAATCTCGTATGTATGTATCGA 93374
|| || ||||| || |||| | ||| ||| | | || || || || ||||
Sbjct 232804 TAGTCTCAATAGCATTGAATAAAAAGTCTGCCTCCTTGGGGTCCTTGATATAGGTGTCGA 232745
Query 93375 TTAACAGAGAATACATTTCAGAATGGACATTCTCCATTGCAATTTGGAATCCGTAGAAAC 93434
| |||| || || | || || |||| ||| ||||| |||||||| ||||| || |
Sbjct 232744 TCAACAAGGAGTAGGTCTCTGAGTGGATATTTTCCATCATGATTTGGAAACCGTAAAAGC 232685
Query 93435 ATCTAGCTTCCGTGATCTGCACTTCTTGAGAAAATCTCTCTACGAGATTTTCATTGACTA 93494
|| | ||||| | ||||| || || ||| || |||| || | || || || || |
Sbjct 232684 ATTTGGCTTCTGGAATCTGAACCTCGGCAGAGAAGTTCTCCACCAAGTTCTCGTTAACAA 232625
Query 93495 TACCATCGGATGCTGCaaaaaaaGCCAATATATGCTTTATAAAATGTTTCTCATCATC-T 93553
|||||||||| || || ||||| ||||| ||| | || || ||| | || |
Sbjct 232624 TACCATCGGAAGCAGCGAAAAATGCCAAAATACGGGAAATGAAGAAACGCTCGTTGTCGT 232565
Query 93554 TTAAGC--TTATCCCAATC-GGATAGATCTTTTGAAAGATCGACTTCTTCGACAGTCCAA 93610
| |||| || | ||| || || | |||||| | ||||| ||| || ||||||||
Sbjct 232564 TCAAGCGATTGTTCCAGTCATGAGTG-TCTTTTCCCAAATCGATTTCCTCTGCAGTCCAA 232506
Query 93611 AACGATGCTTCTGCTTTTTTGTACATATCCCATATGTCTTGATATTGAATTGGAAATATG 93670
|| |||||||||||||| |||||||| | ||| || || || |||| ||| || || |
Sbjct 232505 AAAGATGCTTCTGCTTTCTTGTACATTTGCCAAATCTCGTGGTATTTAATAGGGAAAAGA 232446
Query 93671 ACAAAACGATTAGGGTTATCTTT 93693
||||||||| || ||| || ||
Sbjct 232445 ACAAAACGACGAGTGTTCTCCTT 232423
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 556860660784800
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |