Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Wickerhamia_20fluorescens_20[genbank_20GCA_5F001599155.1_202016-03-
01] 20 sequences; 13,178,500 total letters
Query= NC_008724.1
Length=288047
Score E
Sequences producing significant alignments: (Bits) Value
seq7 158 2e-33
seq1 156 8e-33
>seq7
Length=860703
Score = 158 bits (174), Expect = 2e-33
Identities = 165/217 (76%), Gaps = 0/217 (0%)
Strand=Plus/Minus
Query 68249 CAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAGAGTGTCCTCCCATC 68308
||| |||||||| || || ||||| ||||||||||| || || || || || | || ||
Sbjct 37845 CAACACCAAGTGAAGAGTAGACTCCTTTTGGATGTTGTAGTCAGAAAGAGTACGGCCGTC 37786
Query 68309 TTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTC 68368
|| || ||||| || || || || | |||||| ||||| || ||||| |||||||||||
Sbjct 37785 CTCCAATTGCTTACCAGCAAAAATCAATCTTTGCTGGTCAGGGGGAATACCTTCCTTGTC 37726
Query 68369 TTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGTGATGGT 68428
|||||||| | |||||| || |||||||| | || || || || | |||||| ||
Sbjct 37725 CTGAATCTTGGACTTGACATTGTCAATGGTGTCGGAAGACTCCACCTCAAGGGTGATAGT 37666
Query 68429 TTTTCCCGTGAGGGTCTTGACGAATATCTGCATTATG 68465
|| || || | |||||||||||| || ||||| |||
Sbjct 37665 CTTACCGGTTAAGGTCTTGACGAAAATTTGCATGATG 37629
>seq1
Length=2974285
Score = 156 bits (172), Expect = 8e-33
Identities = 162/213 (76%), Gaps = 0/213 (0%)
Strand=Plus/Plus
Query 68249 CAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAGAGTGTCCTCCCATC 68308
|||||| | || ||||| ||||| ||||| || || || || || | || || |||||
Sbjct 1360605 CAATACAAGATGAAGCGTAGACTCCTTTTGAATATTGTAGTCTGATAACGTTCTTCCATC 1360664
Query 68309 TTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTC 68368
|||||| ||||| || ||||| || | ||| || ||||| |||||||| || ||||||||
Sbjct 1360665 TTCTAATTGCTTACCAGCGAAAATCAATCTCTGCTGGTCTGGTGGAATACCCTCCTTGTC 1360724
Query 68369 TTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGTGATGGT 68428
|||||||| | |||||| || || ||||| | ||||| || || | ||| || ||
Sbjct 1360725 CTGAATCTTGGACTTGACKTTGTCAATAGTGTCAGAGGATTCAACCTCAAGGGTAATAGT 1360784
Query 68429 TTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461
|||||| || | ||||||||| || || |||||
Sbjct 1360785 TTTTCCAGTCAAGGTCTTGACAAAGATTTGCAT 1360817
Score = 149 bits (164), Expect = 1e-30
Identities = 163/217 (75%), Gaps = 0/217 (0%)
Strand=Plus/Plus
Query 68249 CAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAGAGTGTCCTCCCATC 68308
|||||| | || || || ||||| || || || || || || || | || || |||||
Sbjct 1361289 CAATACAAGATGAAGTGTAGACTCCTTCTGAATATTGTAGTCTGATAACGTTCTGCCATC 1361348
Query 68309 TTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTC 68368
|||||| ||||| || ||||| || | ||| || ||||| |||||||| || ||||||||
Sbjct 1361349 TTCTAATTGCTTACCAGCGAAAATCAATCTCTGCTGGTCTGGTGGAATACCCTCCTTGTC 1361408
Query 68369 TTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGTGATGGT 68428
|||||||| | ||||||| || || ||||| | ||||| || || | ||| || ||
Sbjct 1361409 CTGAATCTTGGACTTGACGTTGTCAATAGTGTCAGAGGATTCAACCTCAAGGGTAATAGT 1361468
Query 68429 TTTTCCCGTGAGGGTCTTGACGAATATCTGCATTATG 68465
|||||| || | |||||| || || || |||||| ||
Sbjct 1361469 TTTTCCAGTCAAGGTCTTTACAAAGATTTGCATTGTG 1361505
Score = 147 bits (162), Expect = 4e-30
Identities = 160/213 (75%), Gaps = 0/213 (0%)
Strand=Plus/Plus
Query 68249 CAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAGAGTGTCCTCCCATC 68308
|||||| | || || || ||||| || || || || || || || | || || |||||
Sbjct 1360833 CAATACAAGATGAAGTGTAGACTCCTTCTGAATATTGTAGTCTGATAACGTTCTGCCATC 1360892
Query 68309 TTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTC 68368
|||||| ||||| || ||||| || | ||| || ||||| |||||||| || ||||||||
Sbjct 1360893 TTCTAATTGCTTACCAGCGAAAATCAATCTCTGCTGGTCTGGTGGAATACCCTCCTTGTC 1360952
Query 68369 TTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGTGATGGT 68428
|||||||| | |||||| || || ||||| | ||||| || || | ||| || ||
Sbjct 1360953 CTGAATCTTGGACTTGACRTTGTCAATAGTGTCAGAGGATTCAACCTCAAGGGTAATAGT 1361012
Query 68429 TTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461
|||||| || | ||||||||| || || |||||
Sbjct 1361013 TTTTCCAGTCAAGGTCTTGACAAAGATTTGCAT 1361045
Score = 147 bits (162), Expect = 4e-30
Identities = 160/213 (75%), Gaps = 0/213 (0%)
Strand=Plus/Plus
Query 68249 CAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAGAGTGTCCTCCCATC 68308
|||||| | || || || ||||| || || || || || || || | || || |||||
Sbjct 1361061 CAATACAAGATGAAGTGTAGACTCCTTCTGAATATTGTAGTCTGATAACGTTCTGCCATC 1361120
Query 68309 TTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTC 68368
|||||| ||||| || ||||| || | ||| || ||||| |||||||| || ||||||||
Sbjct 1361121 TTCTAATTGCTTACCAGCGAAAATCAATCTCTGCTGGTCTGGTGGAATACCCTCCTTGTC 1361180
Query 68369 TTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGTGATGGT 68428
|||||||| | |||||| || || ||||| | ||||| || || | ||| || ||
Sbjct 1361181 CTGAATCTTGGACTTGACRTTGTCAATAGTGTCAGAGGATTCAACCTCAAGGGTAATAGT 1361240
Query 68429 TTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461
|||||| || | ||||||||| || || |||||
Sbjct 1361241 TTTTCCAGTCAAGGTCTTGACAAAGATTTGCAT 1361273
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 921622169594400
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |