Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Wickerhamia_20fluorescens_20[genbank_20GCA_5F001599155.1_202016-03- 01] 20 sequences; 13,178,500 total letters Query= NC_008724.1 Length=288047 Score E Sequences producing significant alignments: (Bits) Value seq7 158 2e-33 seq1 156 8e-33 >seq7 Length=860703 Score = 158 bits (174), Expect = 2e-33 Identities = 165/217 (76%), Gaps = 0/217 (0%) Strand=Plus/Minus Query 68249 CAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAGAGTGTCCTCCCATC 68308 ||| |||||||| || || ||||| ||||||||||| || || || || || | || || Sbjct 37845 CAACACCAAGTGAAGAGTAGACTCCTTTTGGATGTTGTAGTCAGAAAGAGTACGGCCGTC 37786 Query 68309 TTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTC 68368 || || ||||| || || || || | |||||| ||||| || ||||| ||||||||||| Sbjct 37785 CTCCAATTGCTTACCAGCAAAAATCAATCTTTGCTGGTCAGGGGGAATACCTTCCTTGTC 37726 Query 68369 TTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGTGATGGT 68428 |||||||| | |||||| || |||||||| | || || || || | |||||| || Sbjct 37725 CTGAATCTTGGACTTGACATTGTCAATGGTGTCGGAAGACTCCACCTCAAGGGTGATAGT 37666 Query 68429 TTTTCCCGTGAGGGTCTTGACGAATATCTGCATTATG 68465 || || || | |||||||||||| || ||||| ||| Sbjct 37665 CTTACCGGTTAAGGTCTTGACGAAAATTTGCATGATG 37629 >seq1 Length=2974285 Score = 156 bits (172), Expect = 8e-33 Identities = 162/213 (76%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 68249 CAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAGAGTGTCCTCCCATC 68308 |||||| | || ||||| ||||| ||||| || || || || || | || || ||||| Sbjct 1360605 CAATACAAGATGAAGCGTAGACTCCTTTTGAATATTGTAGTCTGATAACGTTCTTCCATC 1360664 Query 68309 TTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTC 68368 |||||| ||||| || ||||| || | ||| || ||||| |||||||| || |||||||| Sbjct 1360665 TTCTAATTGCTTACCAGCGAAAATCAATCTCTGCTGGTCTGGTGGAATACCCTCCTTGTC 1360724 Query 68369 TTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGTGATGGT 68428 |||||||| | |||||| || || ||||| | ||||| || || | ||| || || Sbjct 1360725 CTGAATCTTGGACTTGACKTTGTCAATAGTGTCAGAGGATTCAACCTCAAGGGTAATAGT 1360784 Query 68429 TTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 |||||| || | ||||||||| || || ||||| Sbjct 1360785 TTTTCCAGTCAAGGTCTTGACAAAGATTTGCAT 1360817 Score = 149 bits (164), Expect = 1e-30 Identities = 163/217 (75%), Gaps = 0/217 (0%) Strand=Plus/Plus Query 68249 CAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAGAGTGTCCTCCCATC 68308 |||||| | || || || ||||| || || || || || || || | || || ||||| Sbjct 1361289 CAATACAAGATGAAGTGTAGACTCCTTCTGAATATTGTAGTCTGATAACGTTCTGCCATC 1361348 Query 68309 TTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTC 68368 |||||| ||||| || ||||| || | ||| || ||||| |||||||| || |||||||| Sbjct 1361349 TTCTAATTGCTTACCAGCGAAAATCAATCTCTGCTGGTCTGGTGGAATACCCTCCTTGTC 1361408 Query 68369 TTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGTGATGGT 68428 |||||||| | ||||||| || || ||||| | ||||| || || | ||| || || Sbjct 1361409 CTGAATCTTGGACTTGACGTTGTCAATAGTGTCAGAGGATTCAACCTCAAGGGTAATAGT 1361468 Query 68429 TTTTCCCGTGAGGGTCTTGACGAATATCTGCATTATG 68465 |||||| || | |||||| || || || |||||| || Sbjct 1361469 TTTTCCAGTCAAGGTCTTTACAAAGATTTGCATTGTG 1361505 Score = 147 bits (162), Expect = 4e-30 Identities = 160/213 (75%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 68249 CAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAGAGTGTCCTCCCATC 68308 |||||| | || || || ||||| || || || || || || || | || || ||||| Sbjct 1360833 CAATACAAGATGAAGTGTAGACTCCTTCTGAATATTGTAGTCTGATAACGTTCTGCCATC 1360892 Query 68309 TTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTC 68368 |||||| ||||| || ||||| || | ||| || ||||| |||||||| || |||||||| Sbjct 1360893 TTCTAATTGCTTACCAGCGAAAATCAATCTCTGCTGGTCTGGTGGAATACCCTCCTTGTC 1360952 Query 68369 TTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGTGATGGT 68428 |||||||| | |||||| || || ||||| | ||||| || || | ||| || || Sbjct 1360953 CTGAATCTTGGACTTGACRTTGTCAATAGTGTCAGAGGATTCAACCTCAAGGGTAATAGT 1361012 Query 68429 TTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 |||||| || | ||||||||| || || ||||| Sbjct 1361013 TTTTCCAGTCAAGGTCTTGACAAAGATTTGCAT 1361045 Score = 147 bits (162), Expect = 4e-30 Identities = 160/213 (75%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 68249 CAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAGAGTGTCCTCCCATC 68308 |||||| | || || || ||||| || || || || || || || | || || ||||| Sbjct 1361061 CAATACAAGATGAAGTGTAGACTCCTTCTGAATATTGTAGTCTGATAACGTTCTGCCATC 1361120 Query 68309 TTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTC 68368 |||||| ||||| || ||||| || | ||| || ||||| |||||||| || |||||||| Sbjct 1361121 TTCTAATTGCTTACCAGCGAAAATCAATCTCTGCTGGTCTGGTGGAATACCCTCCTTGTC 1361180 Query 68369 TTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGTGATGGT 68428 |||||||| | |||||| || || ||||| | ||||| || || | ||| || || Sbjct 1361181 CTGAATCTTGGACTTGACRTTGTCAATAGTGTCAGAGGATTCAACCTCAAGGGTAATAGT 1361240 Query 68429 TTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 |||||| || | ||||||||| || || ||||| Sbjct 1361241 TTTTCCAGTCAAGGTCTTGACAAAGATTTGCAT 1361273 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 921622169594400