Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Wickerhamia_20fluorescens_20[genbank_20GCA_5F001599155.1_202016-03- 01] 20 sequences; 13,178,500 total letters Query= NC_008725.1 Length=111953 Score E Sequences producing significant alignments: (Bits) Value seq1 96.9 2e-15 >seq1 Length=2974285 Score = 96.9 bits (106), Expect = 2e-15 Identities = 148/212 (70%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 21834 ATGCAAATATTTATTAAAACATTAACGGGCAAAACCATTACCGTGGAAACGGAAGCCGCA 21893 |||||||| ||| | || || || || || ||||| |||||| | || ||| || | Sbjct 1361045 ATGCAAATCTTTGTCAAGACCTTGACTGGAAAAACTATTACCCTTGAGGTTGAATCCTCT 1360986 Query 21894 GAAACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAGGGTGTACCTGTAAACCAA 21953 || || | | | | | ||| || ||| || || |||||| | || | |||| Sbjct 1360985 GACACTATTGACAAYGTCAAGTCCAAGATTCAGGACAAGGAGGGTATTCCACCAGACCAG 1360926 Query 21954 CAGAGACTTATCTTTGCTGGCAAACAACTAGAAGATTTAAAAACTATGGCCGATTACAAT 22013 |||||| | || || ||||| || ||| |||||||| | ||| | | || |||||| Sbjct 1360925 CAGAGATTGATTTTCGCTGGTAAGCAATTAGAAGATGGCAGAACGTTATCAGACTACAAT 1360866 Query 22014 ATTCAGAAGGAATCTACTCTTCATATGGTATT 22045 ||||||||||| ||||| |||||| | ||||| Sbjct 1360865 ATTCAGAAGGAGTCTACACTTCATCTTGTATT 1360834 Score = 96.9 bits (106), Expect = 2e-15 Identities = 148/212 (70%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 21834 ATGCAAATATTTATTAAAACATTAACGGGCAAAACCATTACCGTGGAAACGGAAGCCGCA 21893 |||||||| ||| | || || || || || ||||| |||||| | || ||| || | Sbjct 1361273 ATGCAAATCTTTGTCAAGACCTTGACTGGAAAAACTATTACCCTTGAGGTTGAATCCTCT 1361214 Query 21894 GAAACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAGGGTGTACCTGTAAACCAA 21953 || || | | | | | ||| || ||| || || |||||| | || | |||| Sbjct 1361213 GACACTATTGACAAYGTCAAGTCCAAGATTCAGGACAAGGAGGGTATTCCACCAGACCAG 1361154 Query 21954 CAGAGACTTATCTTTGCTGGCAAACAACTAGAAGATTTAAAAACTATGGCCGATTACAAT 22013 |||||| | || || ||||| || ||| |||||||| | ||| | | || |||||| Sbjct 1361153 CAGAGATTGATTTTCGCTGGTAAGCAATTAGAAGATGGCAGAACGTTATCAGACTACAAT 1361094 Query 22014 ATTCAGAAGGAATCTACTCTTCATATGGTATT 22045 ||||||||||| ||||| |||||| | ||||| Sbjct 1361093 ATTCAGAAGGAGTCTACACTTCATCTTGTATT 1361062 Score = 96.9 bits (106), Expect = 2e-15 Identities = 151/216 (70%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 21830 CAAAATGCAAATATTTATTAAAACATTAACGGGCAAAACCATTACCGTGGAAACGGAAGC 21889 || ||||||||| ||| | || || || || || ||||| |||||| | || ||| | Sbjct 1361505 CACAATGCAAATCTTTGTAAAGACCTTGACTGGAAAAACTATTACCCTTGAGGTTGAATC 1361446 Query 21890 CGCAGAAACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAGGGTGTACCTGTAAA 21949 | | || || | | | | | ||| || ||| || || |||||| | || | | Sbjct 1361445 CTCTGACACTATTGACAACGTCAAGTCCAAGATTCAGGACAAGGAGGGTATTCCACCAGA 1361386 Query 21950 CCAACAGAGACTTATCTTTGCTGGCAAACAACTAGAAGATTTAAAAACTATGGCCGATTA 22009 ||| |||||| | || || ||||| || ||| |||||||| | ||| | | || || Sbjct 1361385 CCAGCAGAGATTGATTTTCGCTGGTAAGCAATTAGAAGATGGCAGAACGTTATCAGACTA 1361326 Query 22010 CAATATTCAGAAGGAATCTACTCTTCATATGGTATT 22045 ||||||||||||||| ||||| |||||| | ||||| Sbjct 1361325 CAATATTCAGAAGGAGTCTACACTTCATCTTGTATT 1361290 Score = 95.1 bits (104), Expect = 9e-15 Identities = 148/212 (70%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 21834 ATGCAAATATTTATTAAAACATTAACGGGCAAAACCATTACCGTGGAAACGGAAGCCGCA 21893 |||||||| ||| | || || || || || ||||| |||||| | || ||| || | Sbjct 1360817 ATGCAAATCTTTGTCAAGACCTTGACTGGAAAAACTATTACCCTTGAGGTTGAATCCTCT 1360758 Query 21894 GAAACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAGGGTGTACCTGTAAACCAA 21953 || || | | | | | ||| || ||| || || |||||| | || | |||| Sbjct 1360757 GACACTATTGACAAMGTCAAGTCCAAGATTCAGGACAAGGAGGGTATTCCACCAGACCAG 1360698 Query 21954 CAGAGACTTATCTTTGCTGGCAAACAACTAGAAGATTTAAAAACTATGGCCGATTACAAT 22013 |||||| | || || ||||| || ||| |||||||| || ||| | | || |||||| Sbjct 1360697 CAGAGATTGATTTTCGCTGGTAAGCAATTAGAAGATGGAAGAACGTTATCAGACTACAAT 1360638 Query 22014 ATTCAGAAGGAATCTACTCTTCATATGGTATT 22045 ||||| ||||| ||||| |||||| | ||||| Sbjct 1360637 ATTCAAAAGGAGTCTACGCTTCATCTTGTATT 1360606 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 358124712707080