Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Wickerhamia_20fluorescens_20[genbank_20GCA_5F001599155.1_202016-03-
01] 20 sequences; 13,178,500 total letters
Query= NC_009898.1
Length=368683
Score E
Sequences producing significant alignments: (Bits) Value
seq1 96.9 8e-15
seq7 86.0 1e-11
>seq1
Length=2974285
Score = 96.9 bits (106), Expect = 8e-15
Identities = 164/237 (69%), Gaps = 1/237 (0%)
Strand=Plus/Plus
Query 288237 TCATACATGTCCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATT 288296
|| ||||| ||||| | | ||| | ||| ||||||| ||| || ||||| |||||
Sbjct 1360582 TCTTACATA-CCACCTCTCAATCTCAATACAAGATGAAGCGTAGACTCCTTTTGAATATT 1360640
Query 288297 ATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTG 288356
||||| | | ||| | ||| ||||||||||| || || ||||| |||| | ||| ||
Sbjct 1360641 GTAGTCTGATAACGTTCTTCCATCTTCTAATTGCTTACCAGCGAAAATCAATCTCTGCTG 1360700
Query 288357 AGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCT 288416
||| || || || || ||||| || || | || || || || |||| ||
Sbjct 1360701 GTCTGGTGGAATACCCTCCTTGTCCTGAATCTTGGACTTGACKTTGTCAATAGTGTCAGA 1360760
Query 288417 CGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473
||||| || || || || || || || || |||| |||||||| || || |||||
Sbjct 1360761 GGATTCAACCTCAAGGGTAATAGTTTTTCCAGTCAAGGTCTTGACAAAGATTTGCAT 1360817
Score = 86.0 bits (94), Expect = 1e-11
Identities = 158/232 (68%), Gaps = 0/232 (0%)
Strand=Plus/Plus
Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306
||||| | | ||| | ||| ||||||| || || || || ||||| ||||| |
Sbjct 1361275 CCACCTCTCAATCTCAATACAAGATGAAGTGTAGACTCCTTCTGAATATTGTAGTCTGAT 1361334
Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366
| ||| | || ||||||||||| || || ||||| |||| | ||| || |||
Sbjct 1361335 AACGTTCTGCCATCTTCTAATTGCTTACCAGCGAAAATCAATCTCTGCTGGTCTGGTGGA 1361394
Query 288367 ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACT 288426
|| || || || ||||| || || | || ||||| || |||| || ||||| ||
Sbjct 1361395 ATACCCTCCTTGTCCTGAATCTTGGACTTGACGTTGTCAATAGTGTCAGAGGATTCAACC 1361454
Query 288427 TCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCATTATGT 288478
|| || || || || || || |||| ||||| || || || |||||| |||
Sbjct 1361455 TCAAGGGTAATAGTTTTTCCAGTCAAGGTCTTTACAAAGATTTGCATTGTGT 1361506
>seq7
Length=860703
Score = 86.0 bits (94), Expect = 1e-11
Identities = 136/195 (70%), Gaps = 0/195 (0%)
Strand=Plus/Minus
Query 288283 TCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAG 288342
|| |||||||| || ||||| | || || || ||||| || ||||| || || || ||
Sbjct 37823 TCCTTTTGGATGTTGTAGTCAGAAAGAGTACGGCCGTCCTCCAATTGCTTACCAGCAAAA 37764
Query 288343 ATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTT 288402
|||| | || || | || || ||||| || ||||| || || | || || ||
Sbjct 37763 ATCAATCTTTGCTGGTCAGGGGGAATACCTTCCTTGTCCTGAATCTTGGACTTGACATTG 37704
Query 288403 TCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACG 288462
|| || | ||| || || || || || ||||| ||||| ||||| | |||||||||
Sbjct 37703 TCAATGGTGTCGGAAGACTCCACCTCAAGGGTGATAGTCTTACCGGTTAAGGTCTTGACG 37644
Query 288463 AATATCTGCATTATG 288477
|| || ||||| |||
Sbjct 37643 AAAATTTGCATGATG 37629
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1179654097713560
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |