Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Wickerhamia_20fluorescens_20[genbank_20GCA_5F001599155.1_202016-03- 01] 20 sequences; 13,178,500 total letters Query= NC_010191.2 Length=186713 Score E Sequences producing significant alignments: (Bits) Value seq1 242 4e-59 >seq1 Length=2974285 Score = 242 bits (268), Expect = 4e-59 Identities = 903/1404 (64%), Gaps = 35/1404 (2%) Strand=Plus/Minus Query 113942 TAGATATTGGTCGTGTATGGCTCAAAGCACTCATTGTTACCCAAGATTTGGGCGGTGGAG 114001 |||||||||| ||||| || ||||||||||| ||||||||||| ||||||| ||||| Sbjct 200512 TAGATATTGGAAGTGTAGGGTTCAAAGCACTCGTTGTTACCCAATATTTGGGAAGTGGAT 200453 Query 114002 GCTGTGGGCATGGGTGCCATGAGAAGGCTGTTACGGAGACCCTT-TTCCCTAATGCGTTC 114060 || ||||||||||| || | | | || | | ||| | || | ||| || Sbjct 200452 GCCGTGGGCATGGGAGCAACCAATAACGAATTTCTAATACCATGCTTAGCCAATTT-TTG 200394 Query 114061 CTTGAGGGCGTCCCAGTCGTAGT------TGAGCTTTGTCTCCCCCTGCCACATATCAAA 114114 ||| | | ||||||||| | || ||||| | |||| | | |||||| Sbjct 200393 CTTTAATGTGTCCCAGTCCCACAACTCACTGGGCTTTCTGTCCC------AAAGATCAAA 200340 Query 114115 CTGGAGGATACCTTGGGAGGCTGGCGATCCCTCAAATGTCTCGTATGGGCCCTCAACCTC 114174 ||| | | ||| | ||||||||| || ||||| | | ||||| | ||||| |||| Sbjct 200339 CTGTAACAAACCCTTGGAGGCTGGAGACCCCTCGTAACTTTCGTAAGAACCCTCGACCTG 200280 Query 114175 CGCCAATTCGGAGCTCGCCTCGAGGGCTGCGTGATACATTGTCTCAAAAATGCGAGCATT 114234 |||||||||| || || || | || |||| ||||| || || ||||| || ||| Sbjct 200279 CGCCAATTCGATACTGGCTTCCACTGCACCGTGGTACATGGTTTCGAAAATCTGAATATT 200220 Query 114235 CATTGCCTTGGCCTCGTCGGAATCAAACGCGAGTCGGCACAAAATAAATACATCCGCGAG 114294 || | | | || | | || ||||| | | || | ||||| |||| || | Sbjct 200219 CAATTCTCTAGCTTGTTGCGAGTCAAAGGGCAATCTCAATGCCATAAAAGCATCTGCCAA 200160 Query 114295 ACCTTGGACACCGAGGCCAATTGGGCGATGTCTCATATTAGA-CTTTCGAGCGGTCTCCA 114353 ||| || ||||| | ||||||| | || ||||| ||||| |||| | || ||| | Sbjct 200159 ACCCTGCACACCCAATGCAATTGGTCTATTCCTCATGTTAGATCTTTTG-GCT-TCTGGA 200102 Query 114354 -CGGGATAAAAATTCCTATCGATAACCCTATTTAGATTTTTGGTGACAACCTTTGTGATT 114412 |||| ||||| || | ||| || | || || | || ||| |||||||| || | | Sbjct 200101 ACGGGGTAAAAGTTACGATCAATGATTCTGTTCAAGTTACGGGTAACAACCTTGGTAACT 200042 Query 114413 TCATGAAGCTTTTC------GTAATCAAAACTGCGAGTCTCTTCATTGACATACTTAGGA 114466 ||||||||||| || ||| || || | |||| | ||| || ||| Sbjct 200041 TCATGAAGCTTCTCAAAGTTGTACCACAAGTTGTTGCTGTCTTTTTCAACAAACGAGGGA 199982 Query 114467 AGGGCGATTGACGCCAGATTACACACAGAGGTCTCATCCTTATCAGTGTACTCTATAATT 114526 || ||||| || |||| ||||| |||| |||||| | ||| || | |||| Sbjct 199981 AGTGCGATAGATGCCAAGTTACATACAGCAACCTCATCTGGCGAGGAGTATTCGACAATT 199922 Query 114527 TCCGTACACAAATTTGAACTCTTAATGGTGCCCAAGTTCTTTTGATTTGACTTTGTGTTA 114586 || ||||||||| ||| || ||| ||||||||||||||||| | ||| | || Sbjct 199921 TCACAACACAAATTGGAAGATTTGATGACACCCAAGTTCTTTTGATTAGTTTTTTTATTG 199862 Query 114587 CACGCATCCTTGTAAAGCATGTATGGCGTCCCCGTCTCCGTTTGGGACTTGAGAATAGCC 114646 || ||||| ||||| | |||| |||| || || || || ||||| | || | ||| || Sbjct 199861 CATGCATCTTTGTACAACATGAATGGGGTACCGGTTTCGGTTTGCGCCTCCAAAATGGCG 199802 Query 114647 TTCCA-GACATCGGCGGCTGGCACAGTGGCGTTGGCTCGCCCCTCCTCCTCGTACTTTGT 114705 | ||| | || | | || | | ||| | | || || |||||||| Sbjct 199801 TACCATAATTTCTGAGCCTTG-ATAGTCTTTCTTCCACGGTTTTCACGTTCGTACTTCTC 199743 Query 114706 GTAGAGGGCTTCAAACTCTTCACCCACGGCCTCTGAGAGCCCTGGTGCCTTATCTGGGCA 114765 ||| | || |||||||| ||||| | || || | ||| | |||| || || | Sbjct 199742 GTACAATGCCTCAAACTCATCACCGTAAACATCGGACAAACCTTGGGCCTCATTAGGAGA 199683 Query 114766 GAAGAGAGACCATTGACCACCCTCCTCAACACGCTTCATGAAGAGGTCTGGGATCCAGAG 114825 ||| | | ||| | | || || |||||| | |||||| || | ||| || ||||| | Sbjct 199682 GAACAAGGTCCACTCAGCATTCTGCTCAACTCTCTTCATAAACAAGTCAGGAATCCACAA 199623 Query 114826 AGCTGAGAAGAGATCCCGACAGCGAGCTTCTTCATCCCCCTGATTGAGACGCAACTCCAA 114885 |||| ||| | ||| | | |||||| | || ||||| | | || | Sbjct 199622 TGCTGGGAACAAATCTCTTGCCCTCATTTCTTCCTTACCATGATTCTTTCTAATATCGAT 199563 Query 114886 AAAGTCCATGATATCCGCGTGCCACGGTTCCAGGTACACCGCGATTG-AC-----CCCTT 114939 || || | ||||||||||||||| ||||||| || | || | || || | ||| Sbjct 199562 GAAATCAAAGATATCCGCGTGCCATGGTTCCAAATATAAGGCAAATGCACCGGGTCTCTT 199503 Query 114940 ACGACGACCAGCCTGGTTTACATACCTCGCTGTGGCATTAAATACGCGAAGCATTGGAAT 114999 | |||| |||| | || || | || ||| ||| || || | || ||| ||||| Sbjct 199502 ---ATTACCACCCTGATCCACGTAACGAGCAGTGTTATTGAAAACTCTAACCATAGGAAT 199446 Query 115000 GATACCATCAGATTGGCCATTTGTCCCCCGAATACGAGACTTATTGGCTCTGACATCATG 115059 |||||||| ||| || || || || ||| | | | | | | | || Sbjct 199445 GATACCATTAGAGGTACCGTTGGTACCAGCAATGTAGGCACCAGTCGAGCGAATGTTGTG 199386 Query 115060 GATGTGCATACCAATACCCCCTGCCCACTTTGAGATTTGCGCGCACTCCGTGAGACTGCC 115119 ||||| | ||||||||| || || | ||| || || || || | | | | | Sbjct 199385 TATGTGTAAACCAATACCTCCAGCACTCTTGGAAATCAAGGCACATGTCTTCAAGGTATC 199326 Query 115120 GTAGATCCCGTCGATCGAGTCACCCTTATTTGCGATAAGGAAGCAGCTCGACATTTGTGG 115179 || || ||||| || || ||| | || | || || | ||||| |||||||| || Sbjct 199325 ATAAATACCGTCAATAGAATCATCTTTCATAGCAATCAAAAAGCACGAGGACATTTGAGG 199266 Query 115180 CCTTGGTGTACCAGCGTTGAAGAGGGTTGGTGTCGCGTGGATGAACATACCTTGGGACAT 115239 | ||||||||||| || || | || || | ||||| | || | |||||||| Sbjct 199265 GTTGGGTGTACCAGCATTAAACAAAGTAGGCGAGCCGTGGGTAAAGTGTCTCTGGGACAT 199206 Query 115240 CTTATCGTAGGTCTCCAAGACGGCGGGAATGTCTTCCCCGTGAATACCGATCGAGACCCG 115299 | ||| ||| || || | ||| ||||||||| || || |||||||| || | || | Sbjct 199205 CATATTGTAAGTTTCAATGACTCTGGGAATGTCGTCACCATGAATACCAATGGCAACTCT 199146 Query 115300 CATAAACATGTATTGGGGTGTTTC 115323 ||||| | || || ||| |||| Sbjct 199145 CATAATTAAGTGCTGAGGTCTTTC 199122 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 597353450661600